mRNA_Ecto-sp8_S_contig91405.30464.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig91405.30464.1
Unique NamemRNA_Ecto-sp8_S_contig91405.30464.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig91405.30464.1 vs. uniprot
Match: A0A6H5L4J3_9PHAE (RED_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J3_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.970e-43
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:    1 RRGKLIVASGDDDPNKYRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIEV 246
            RRGKLIVASG +DPNKYRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIEV
Sbjct:   91 RRGKLIVASGVNDPNKYRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIEV 172
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BLAST of mRNA_Ecto-sp8_S_contig91405.30464.1 vs. uniprot
Match: A0A4D9CVF8_9STRA (RED_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVF8_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.330e-20
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   19 VASGDDDPNKYRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIR 216
            VA G  +   YRDRA+ERRKG NPDY D++ ++  MDAETTKYLGGDV+HTHLVKGLDYALL ++R
Sbjct:  140 VAGGASEEGGYRDRAEERRKGVNPDYEDEIARLVHMDAETTKYLGGDVKHTHLVKGLDYALLQRVR 205
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BLAST of mRNA_Ecto-sp8_S_contig91405.30464.1 vs. uniprot
Match: A0A7S3XKR5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKR5_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 1.470e-19
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:   49 YRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREE---ERQQQIE 243
            YRDRA ERR+G NPDY D + +M  MD E +KYLGGDV+HTHLV+GLDYALL K+R+E   ++QQQ+E
Sbjct:  114 YRDRAAERRQGYNPDYDDDIEKMVQMDVEKSKYLGGDVKHTHLVRGLDYALLNKVRQETLEQQQQQLE 181
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BLAST of mRNA_Ecto-sp8_S_contig91405.30464.1 vs. uniprot
Match: D7FT17_ECTSI (RED_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT17_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.710e-17
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:  124 MDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIEV 246
            MDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIE+
Sbjct:    1 MDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIEI 41
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BLAST of mRNA_Ecto-sp8_S_contig91405.30464.1 vs. uniprot
Match: A0A7S2W4J1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4J1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 7.420e-17
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:   46 KYRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREE 222
            KYRDRA+ERRK  NPDY   + ++  +D E +KYLGGDVEHTHLVKGLDYALL K+R+E
Sbjct:   71 KYRDRANERRKEINPDYKTDVQKLLEVDIEKSKYLGGDVEHTHLVKGLDYALLSKVRDE 129
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BLAST of mRNA_Ecto-sp8_S_contig91405.30464.1 vs. uniprot
Match: A0A812YWK0_SYMMI (SMU2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YWK0_SYMMI)

HSP 1 Score: 81.6 bits (200), Expect = 2.540e-16
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   49 YRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQ 237
            YRDRA ERR   NPDY  +L  +A++D E TKYLGGD EHTHLVKGLDYALL K+R +  + +
Sbjct:   73 YRDRAQERRNDANPDYDAQLEAVANLDVEQTKYLGGDEEHTHLVKGLDYALLRKVRNQTEKNE 135
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BLAST of mRNA_Ecto-sp8_S_contig91405.30464.1 vs. uniprot
Match: A0A397GNT5_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GNT5_9GLOM)

HSP 1 Score: 81.3 bits (199), Expect = 5.390e-16
Identity = 44/83 (53.01%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   10 KLIVASGDDDPNKYRDRADERRKGQNPDYADKLNQMASMDAET---------TKYLGGDVEHTHLVKGLDYALLVKIREEERQ 231
            KL  +  +   NKYRDRA ERRKG NPDY +    + ++++ET         +KYLGGD EHTHLVKGLDYALL K+R E  Q
Sbjct:   77 KLETSDAETTDNKYRDRAAERRKGANPDYQETEQILKALNSETLEAKLIYEQSKYLGGDTEHTHLVKGLDYALLAKVRNEITQ 159
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BLAST of mRNA_Ecto-sp8_S_contig91405.30464.1 vs. uniprot
Match: A0A7R9Z3L9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z3L9_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 7.780e-16
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   31 DDDPNKYRDRADERRKGQNPDYADKLNQMAS----------MDAETTKYLGGDVEHTHLVKGLDYALLVKIR 216
            +DD  KYRDRA+ERR+G NPDYA   NQ+A+          +  E TKYLGGD+EHTHLVKGLD+ALL K R
Sbjct:   67 EDDGPKYRDRAEERRRGINPDYAS-ANQLAAALPGDVDMNALSVEETKYLGGDIEHTHLVKGLDFALLQKER 137
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BLAST of mRNA_Ecto-sp8_S_contig91405.30464.1 vs. uniprot
Match: A0A1Y1YJX7_9FUNG (RED_N domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YJX7_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 1.330e-15
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   25 SGDDDPNKYRDRADERRKGQNPDYADKLNQMASMDA--------ETTKYLGGDVEHTHLVKGLDYALLVKIREEE 225
            + D+D  KYRDRA ERR+G+NPDY +    +A++          E +KYLGGD EHTHLVKGLDYALL K+R E+
Sbjct:   87 ANDEDSEKYRDRARERRRGENPDYVETERILATLQTPEDPNLAYEKSKYLGGDAEHTHLVKGLDYALLEKVRREK 161
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BLAST of mRNA_Ecto-sp8_S_contig91405.30464.1 vs. uniprot
Match: A0A7R9YBH1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBH1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.390e-15
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:   49 YRDRADERRKGQNPDYADKLNQMAS--MDAETTKYLGGDVEHTHLVKGLDYALLVKIRE 219
            YRDRA ERR G NPDYA +L  +A+  +DA  TKYLGGDVEHTHLVKGLD+ALL K+R+
Sbjct:  113 YRDRAAERRAGLNPDYAGELEDLAAKKVDASMTKYLGGDVEHTHLVKGLDFALLHKVRK 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig91405.30464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4J3_9PHAE1.970e-4397.56RED_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9CVF8_9STRA2.330e-2068.18RED_N domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7S3XKR5_HETAK1.470e-1964.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FT17_ECTSI2.710e-1797.56RED_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2W4J1_9STRA7.420e-1767.80Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812YWK0_SYMMI2.540e-1661.90SMU2 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A397GNT5_9GLOM5.390e-1653.01Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A7R9Z3L9_9CHLO7.780e-1659.72Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A1Y1YJX7_9FUNG1.330e-1554.67RED_N domain-containing protein n=1 Tax=Basidiobol... [more]
A0A7R9YBH1_9STRA1.390e-1569.49Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig91405contigEcto-sp8_S_contig91405:298..567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score84.3
Seed ortholog evalue3.1e-14
Seed eggNOG ortholog2880.D7FT17
Preferred nameIK
Model size270
KEGG koko:K13109
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000278,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005730,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007346,GO:0007399,GO:0007517,GO:0007528,GO:0007610,GO:0007638,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022008,GO:0022402,GO:0023052,GO:0030071,GO:0030154,GO:0030182,GO:0031323,GO:0031577,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0034641,GO:0040011,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0046483,GO:0048024,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048644,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051179,GO:0051252,GO:0051641,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0061061,GO:0065007,GO:0070013,GO:0070727,GO:0071005,GO:0071011,GO:0071173,GO:0071174,GO:0071459,GO:0071704,GO:0071840,GO:0072553,GO:0080090,GO:0090304,GO:0098916,GO:0099172,GO:0099536,GO:0099537,GO:1901360,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1903311,GO:1905818,GO:1905819,GO:1990904,GO:2000816,GO:2001251
Exons1
EggNOG free text desc.protein localization to kinetochore
EggNOG OGsKOG2498@1,KOG2498@2759
Cds size270
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145263.8384879-CDS-Ecto-sp8_S_contig91405:297..5671681145263.8384879-CDS-Ecto-sp8_S_contig91405:297..567Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig91405 298..567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig91405.30464.1prot_Ecto-sp8_S_contig91405.30464.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig91405 298..567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig91405.30464.1

>prot_Ecto-sp8_S_contig91405.30464.1 ID=prot_Ecto-sp8_S_contig91405.30464.1|Name=mRNA_Ecto-sp8_S_contig91405.30464.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=90bp
RRGKLIVASGDDDPNKYRDRADERRKGQNPDYADKLNQMASMDAETTKYL
GGDVEHTHLVKGLDYALLVKIREEERQQQIEVCRLCVWL*
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mRNA from alignment at Ecto-sp8_S_contig91405:298..567-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig91405.30464.1 ID=mRNA_Ecto-sp8_S_contig91405.30464.1|Name=mRNA_Ecto-sp8_S_contig91405.30464.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=270bp|location=Sequence derived from alignment at Ecto-sp8_S_contig91405:298..567- (Ectocarpus species8 EcLAC_412)
CGGCGAGGCAAGCTGATCGTGGCCAGCGGCGACGACGACCCGAACAAGTA
CCGCGATCGCGCCGACGAGCGGCGTAAGGGGCAGAACCCGGACTACGCCG
ACAAGCTGAACCAGATGGCCTCCATGGACGCCGAGACCACCAAGTACCTC
GGTGGTGATGTGGAGCACACTCACTTGGTGAAAGGACTGGACTACGCCCT
GCTCGTCAAGATCAGGGAGGAGGAGCGCCAGCAGCAGATAGAGGTGTGTC
GGCTATGTGTGTGGTTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig91405:298..567-

>mRNA_Ecto-sp8_S_contig91405.30464.1 ID=mRNA_Ecto-sp8_S_contig91405.30464.1|Name=mRNA_Ecto-sp8_S_contig91405.30464.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp8_S_contig91405:298..567- (Ectocarpus species8 EcLAC_412)
CGGCGAGGCAAGCTGATCGTGGCCAGCGGCGACGACGACCCGAACAAGTA
CCGCGATCGCGCCGACGAGCGGCGTAAGGGGCAGAACCCGGACTACGCCG
ACAAGCTGAACCAGATGGCCTCCATGGACGCCGAGACCACCAAGTACCTC
GGTGGTGATGTGGAGCACACTCACTTGGTGAAAGGACTGGACTACGCCCT
GCTCGTCAAGATCAGGGAGGAGGAGCGCCAGCAGCAGATAGAGGTGTGTC
GGCTATGTGTGTGGTTGTAG
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