mRNA_Ecto-sp8_S_contig913.30442.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig913.30442.1
Unique NamemRNA_Ecto-sp8_S_contig913.30442.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig913.30442.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 6.220e-124
Identity = 193/205 (94.15%), Postives = 195/205 (95.12%), Query Frame = 3
Query:  417 MNQHMDIMAILTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSAVRVTNSNGGVEYNDTPLAVTTSFLREKAVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSRGPEPRRPPLSLTLPILKRRAKTRRVCVASLLRHS 1031
            MNQHMDIMAILTGAGVRD MGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSG+PRIVRLLVDAGADTTS VRVTN NGGVEYNDTPLAVTTS LREK VDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERS GPEPRRPPLSLTLPILKRRAKT  V VA+LLR S
Sbjct:    1 MNQHMDIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKTCHVFVATLLRSS 205          
BLAST of mRNA_Ecto-sp8_S_contig913.30442.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 3.520e-85
Identity = 181/347 (52.16%), Postives = 208/347 (59.94%), Query Frame = 3
Query:    3 LEVVAGSDGLTPLHAAVRGGDSEAVTVLIEAGANPDSQTPSGVTVGMGFLSLRAVXXXXXXXXXXXXXXXXXXXXXXXXXAASAISTSRSSPYGTTVVPLDIAACAGYSDVVRELVQEVGIEGCDATNAGEQALHLAAMNQHMDIMAILTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVH-AYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSAVRVTNSNGGVEYNDTPLAVTTSFLREKAV-DGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSRGPEPRRPPLSLTLPILKRRAKTRRVCVASLLRHSVK 1037
            L+ +   +G  PLH A                 NPD Q P G T     L + A                           A+ +    S P  TT VPLD+AA  G++DVVREL+QE+GIEGCDAT+AG  AL  AA NQH+DIMAILT AGV DT G  L   AG+G EASV+FLLR R KE    V  AY N+ D +G TPL    + C S +PRIVR+LVDAGADTTS V+V N  GGV +NDTPLA T   LR+K V DGKPAT+E L RL+AI RLLLRVDAVHAVSWLWPS AP I  A E    PEP  P L L LPILKRR K R   VA+LLR+SVK
Sbjct:  199 LDAIIPGEGSAPLHRATHHEXXXXXXXXXXXXXNPDCQLPDGSTA----LHIAAEEGQVAVMRELLRGN------------ANPLLIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDT-GKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETD--PEPPLPALKLMLPILKRRTKRRCGLVATLLRYSVK 526          
BLAST of mRNA_Ecto-sp8_S_contig913.30442.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 1.490e-64
Identity = 130/228 (57.02%), Postives = 159/228 (69.74%), Query Frame = 3
Query:  246 ASAISTSRSSPYGTTVVPLDIAACAGYSDVVRELVQEVGIEGCDATNAGEQALHLAAMNQHMDIMAILTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSV-HAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSAVRVTNSNGGVEYNDTPLAVTTSFLREKAVD-GKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVER 923
            A  I     S  G   VPLD+AA +G+S VVR LVQE+GI+GC+  NAG+QAL LAA  + +D +AILTGAG  DT G  L+  A    EAS +  LRQR KE +  V +A  N    SG+T L  SI+ C S +PRIVRLL++AGADTTS +R TNS G V+ N TPLA+TTS+L EK +D G+PATEE L RL+AIRRLLLR +AVHAVSWLWPSDA  + HA E+
Sbjct:  155 APCICIQPPSSSGFPGVPLDVAASSGHSGVVRHLVQELGIKGCNPENAGKQALLLAASKRDLDTLAILTGAGAVDTSGSALMCAA----EASFKHFLRQRLKEEKGGVEYASINDRISSGLTALVFSIQRCLSQTPRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAAEK 378          
BLAST of mRNA_Ecto-sp8_S_contig913.30442.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 9.630e-59
Identity = 131/271 (48.34%), Postives = 175/271 (64.58%), Query Frame = 3
Query:  246 ASAISTSRSSPYGTTVVPLDIAACAGYSDVVRELVQEVGIEGCDATNAGEQALHLAAMNQHMDIMAILTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSAVRVTNSNGGVEYNDTPLAVTTSFLREKA--VDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSRGPEPRRPPLS--LTLPIL--KRRAKTRRVCVASLLRHSVKP 1040
            A  + T+   P G T +PLD AA  G+ +VV EL+++VGI+GC  ++ G +AL  AA  ++++IM ILT AGV DT G  L+  AG G E  ++FLL Q R    M   AY N+ D  G+TPL   I+      PR+VRLLV+AGADTTS V V N  GG + + TPL +T + +R+K   V   PA+ EQLH+L+AIRRLLLRV+AVHAVSWLWPSD  +I  A  R      R   +S  +TLP+L  +RRA+ R+V +A+LLR+S KP
Sbjct:  172 ADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDT-GLALVVAAGYGGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGIQHYR---PRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTD---RTTAISTAVTLPMLVTRRRARGRKVPLAALLRYSSKP 435          
BLAST of mRNA_Ecto-sp8_S_contig913.30442.1 vs. uniprot
Match: D8LDX5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDX5_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 5.520e-55
Identity = 149/287 (51.92%), Postives = 177/287 (61.67%), Query Frame = 3
Query:    3 LEVVAGSDGLTPLHAAVRGGDSEAVTVLIEAGANPDSQTPSGVTVGMGFLSLRAVXXXXXXXXXXXXXXXXXXXXXXXXXAASAISTSRSSPYGTTVVPLDIAACAGYSDVVRELVQEVGIEGCDATNAGEQA---LHLAAMNQHMDIMAILTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSV-HAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSAVRVTNSNGGVEYNDTPLAVTTSFLREKAV-DGKPATEEQLHRLQAIRRLLL 848
            LEV+  S G TPLH     G SE V V+I A ANP+S+   G             XXXXXXXXXXXXX                ++   +S  G T +P+D+A   G+SDVVR+LVQ     GC   NAG QA   L  AA  QH+ IMAILTGAGV D +G  LLG A    EASV+FLLRQR  ES  SV ++Y N+SD  G TPL+ SI+ C S + RI+RLL DAGAD  SAVRVTNSNG  EY+ TPLAV TS +REK + +G PATEE L+ L+AI RLLL
Sbjct:    8 LEVMT-SQGSTPLHKDALEGRSEVVGVMIRALANPNSRMLCGAXXXXXXXXXXXXXXXXXXXXXXXXXF---------------LTKKGNSSSGDTAIPMDVAVQNGHSDVVRKLVQW---RGCGVANAGSQACQALFFAASEQHLVIMAILTGAGVVDWVGLSLLGAAESALEASVKFLLRQRYHESTRSVEYSYVNASDTDGWTPLAHSIQRCCSHAARIIRLLFDAGADVASAVRVTNSNGQQEYSGTPLAVVTSCIREKVLANGTPATEEHLYMLEAIGRLLL 275          
BLAST of mRNA_Ecto-sp8_S_contig913.30442.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 6.420e-53
Identity = 131/347 (37.75%), Postives = 185/347 (53.31%), Query Frame = 3
Query:    3 LEVVAGSDGLTPLHAAVRGGDSEAVTVLIEAGANPDSQTPSGVTVGMGFLSLRAVXXXXXXXXXXXXXXXXXXXXXXXXXAASAISTSRSSPYGTTVVPLDIAACAGYSDVVRELVQEVGIEGCDATNAGEQALHLAAMNQHMDIMAILTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSAVRVTNSNGGVEYNDTPLAVTTSFLREKAVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSRGPEPRRPPLSLTLPILK--RRAKTRRVCVASLLRHSVK 1037
            L+     +  TPL  A   G + +VT L++AG+N +++   G T                                     A  + T  S       +PLD+AA  G+ +VV EL+++VGI+GC  ++ GE AL  AA+   +DIMAILT AGV DT G  L+  AG G EA ++FLL Q R        AY N+ +G G+T L   I+ C    PR+V+LLV+AGADTTS V + N  G  +++ TPL +T   L  ++   KP T E+ ++L+ IRRLLLR +AVHAVSWLWPSD P+I HA  +  G        +    +L   RR + R+  +A+LLR+S K
Sbjct:  107 LDAATKQNHCTPLDCAAETGCAASVTALLKAGSNINTRRSDGAT----------------PLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDT-GLALVVAAGYGGEAPLKFLLEQARGRKSTDRAAYMNTLNGVGLTSLLDGIQRCR---PRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGRS--AKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKGLLAALLRYSSK 431          
BLAST of mRNA_Ecto-sp8_S_contig913.30442.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 9.480e-51
Identity = 123/261 (47.13%), Postives = 159/261 (60.92%), Query Frame = 3
Query:  288 TVVPLDIAACAGYSDVVRELVQEVGIEGCDATNAGEQALHLAAMNQHMDIMAILTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCS----SGSPRIVRLLVDAGADTTSAVRVTNSNGGVEYNDTPLAVTTSFLREKAVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDA------PSIVHAVERSRGPEPRRPPLSLTLPILKRRAKTRRVCVASLLRHSVKP 1040
            T++PLD AA  G   V+REL+Q VGIEGC   + GE AL +A   + +  MA+LT AGV DT G  L  +AGLGREASV++LL+   K       AY N  D +G TPL  SI  C     S  PR+ RLLV+AGADTT+ +R TNS G V ++ TPL +T   L++K VDG   ++++L RL+ IRRLLL+V+AVHA SWLWPS +      P   +A E +       P L   LPIL+RRA+   V   +L RH  KP
Sbjct:  169 TLLPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDT-GQALTISAGLGREASVKYLLQNHAKH--YGPGAYVNVRDRNGTTPLLSSIYVCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPD--NAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCRHQRKP 424          
BLAST of mRNA_Ecto-sp8_S_contig913.30442.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.660e-46
Identity = 102/199 (51.26%), Postives = 126/199 (63.32%), Query Frame = 3
Query:  321 GYSDVVRELVQEVGIEGCDATNAGEQALHLAAMNQHMDIMAILTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSAVRVTNSNGGVEYNDTPLAVTTSFLREKAVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAV 917
            G+S+VVREL+Q++G+ GC   +AG ++L LAA  Q++DIM ILT  GV DT G  L+  A   RE SV+FLL+ +       V+   N+ D  G TPL C+IE C S SPRI R L+D GADT S V VT S       DTPL   T  LR+  V GK ATEEQL  L+AI RLL +++AVHAVSWLW S    I HAV
Sbjct:  191 GHSEVVRELIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVDT-GRALVVAAEYSREESVKFLLQHQAGGGTWYVN---NTLDPFGRTPLVCTIEACGSSSPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGHAV 385          
BLAST of mRNA_Ecto-sp8_S_contig913.30442.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 9.180e-46
Identity = 113/266 (42.48%), Postives = 151/266 (56.77%), Query Frame = 3
Query:  246 ASAISTSRSSPYGTTVVPLDIAACAGYSDVVRELVQEVGIEGCDATNAGEQALHLAAMNQHMDIMAILTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSG--SPRIVRLLVDAGADTTSAVRVTNSNGGVEYNDTPLAVTTSFLREKAVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSRGPEPRRPPLSLTLPILKRRAKTRRVCVASLLRHSVK 1037
            A+ + T  S   G + VPL++AA  G S VV EL++E GI  C   + G  AL +AA+   +DIM++L  AGV D +G  LL   G G+EA+V FLLRQ+ +  + S    A   DG  +T L  S     +   +PRI R LVDAGADTTSAV++         N TPL     +   +     PAT+EQL RL+A RR+LLRV AVHAVSW+WPSDAP +       R  +     L+  LP+L+RRA  R +   +L R+S K
Sbjct:  142 ANPLLTWSSESSGRSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQTSYVNIARDDDG--LTALLWSFRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPANSPRTAKHSPTQLTTVLPVLRRRAGRRALLWDTLFRYSKK 405          
BLAST of mRNA_Ecto-sp8_S_contig913.30442.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 9.100e-45
Identity = 114/263 (43.35%), Postives = 159/263 (60.46%), Query Frame = 3
Query:  273 SPYGTTVVPLDIAACAGYSDVVRELVQEVGIEGCDATNAGEQALHLAAMNQHMDIMAILTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSS-DGSGMTPLSCSIEWCSSG--SPRIVRLLVDAGADTTSAVRVTNSNGGVEY-NDTPLAVTTSFLREKAVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPS-DAPSIVHAVERSRGPEPRRP---PLSLTLPILKRRAKTRRVCVASLLRHSVK 1037
            +P G + VPL++AA  G  DV RE++++VGI GC   + G +AL  AA  +H++ MA+L  AG     G  L+  A  GR  +V+FLLR+R+ +++    AY N + D  G TP+ C+++  +    SP+IVRLLVDAGA+TT AV VT      E  ++TPLA TT  LRE  VDG+ AT+EQL RL+  R LL R +AVHAVSWLW S + P I  A   ++          PL    P+L+R+  TR V + +L R+S K
Sbjct:  177 TPMGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQADAD----AYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVATPLRAMSPMLRRKPGTRGVLLKTLFRYSRK 435          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig913.30442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSC5_ECTSI6.220e-12494.15EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FT11_ECTSI3.520e-8552.16EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FVU0_ECTSI1.490e-6457.02EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KJA9_9PHAE9.630e-5948.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDX5_ECTSI5.520e-5551.92EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KQV0_9PHAE6.420e-5337.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJF9_ECTSI9.480e-5147.13EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1U9_ECTSI3.660e-4651.26EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FVU3_ECTSI9.180e-4642.48EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G1H7_ECTSI9.100e-4543.35EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig913contigEcto-sp8_S_contig913:4910..7649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score302.0
Seed ortholog evalue3.1e-79
Seed eggNOG ortholog2880.D7FT11
Model size1605
Hectar predicted targeting categorymitochondrion
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionEsV-1-199
Ec32 orthologEc-21_003200.1
Cds size903
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145262.2941847-UTR-Ecto-sp8_S_contig913:4909..50491681145262.2941847-UTR-Ecto-sp8_S_contig913:4909..5049Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig913 4910..5049 +
1681145262.3366423-UTR-Ecto-sp8_S_contig913:7087..76491681145262.3366423-UTR-Ecto-sp8_S_contig913:7087..7649Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig913 7088..7649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145262.3104646-CDS-Ecto-sp8_S_contig913:5049..59331681145262.3104646-CDS-Ecto-sp8_S_contig913:5049..5933Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig913 5050..5933 +
1681145262.3235724-CDS-Ecto-sp8_S_contig913:7068..70871681145262.3235724-CDS-Ecto-sp8_S_contig913:7068..7087Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig913 7069..7087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig913.30442.1prot_Ecto-sp8_S_contig913.30442.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig913 5050..7087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig913.30442.1

>prot_Ecto-sp8_S_contig913.30442.1 ID=prot_Ecto-sp8_S_contig913.30442.1|Name=mRNA_Ecto-sp8_S_contig913.30442.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=301bp
MGFLSLRAVTPLHVAAAKGRTGALRELLRAKANPAASAISTSRSSPYGTT
VVPLDIAACAGYSDVVRELVQEVGIEGCDATNAGEQALHLAAMNQHMDIM
AILTGAGVRDTMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHAYANSS
DGSGMTPLSCSIEWCSSGSPRIVRLLVDAGADTTSAVRVTNSNGGVEYND
TPLAVTTSFLREKAVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPS
DAPSIVHAVERSRGPEPRRPPLSLTLPILKRRAKTRRVCVASLLRHSVKP
*
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mRNA from alignment at Ecto-sp8_S_contig913:4910..7649+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig913.30442.1 ID=mRNA_Ecto-sp8_S_contig913.30442.1|Name=mRNA_Ecto-sp8_S_contig913.30442.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2740bp|location=Sequence derived from alignment at Ecto-sp8_S_contig913:4910..7649+ (Ectocarpus species8 EcLAC_412)
ACCTCGAAGTCGTCGCGGGATCCGACGGCTTGACACCGCTTCACGCGGCC GTAAGAGGAGGAGACTCGGAGGCGGTGACAGTGTTGATCGAGGCAGGCGC GAATCCCGACAGTCAAACGCCAAGTGGGGTGACTGTTGGTATGGGTTTTC TTTCATTACGAGCCGTGACACCACTGCACGTCGCGGCTGCGAAAGGACGC ACGGGTGCGTTGAGGGAACTGCTTCGTGCGAAGGCGAACCCAGCCGCGAG TGCAATTTCAACATCGAGGTCATCGCCATACGGGACAACTGTCGTTCCAC TGGATATAGCTGCCTGCGCCGGGTACTCGGACGTGGTGCGCGAGCTAGTT CAGGAGGTTGGGATTGAAGGGTGTGATGCTACAAATGCCGGGGAACAAGC TCTCCACCTTGCCGCAATGAACCAGCACATGGACATTATGGCCATCCTGA CCGGAGCCGGCGTGCGCGACACGATGGGCTATGTTCTCCTTGGAACCGCC GGATTGGGCCGTGAGGCATCCGTCCAGTTTCTCTTGCGGCAGCGACGCAA GGAGAGTGAAATGAGCGTTCATGCGTACGCCAACTCCAGCGACGGTTCCG GCATGACACCCCTGAGTTGCAGTATTGAGTGGTGCAGCTCTGGGAGTCCC AGGATCGTGCGGTTGCTCGTTGATGCTGGAGCAGATACGACATCGGCCGT TCGAGTCACGAACTCGAACGGAGGGGTGGAGTACAACGACACACCTCTGG CTGTCACAACCTCGTTCCTCCGCGAGAAGGCTGTAGACGGCAAACCCGCT ACGGAGGAGCAGCTGCACAGGCTGCAGGCCATCCGTCGCTTGCTGTTGCG AGTCGACGCAGTCCATGCGGTGTCTTGGCTGTGGCCAAGCGATGCCCCCT CCATCGTCCATGCTGTAGAGAGGTCCCGTGGTCCCGAGCCGCGTAGGCCA CCGCTGAGCCTGACGTTGCCAATCCTGAAGCGACGGGCAAAGACACGTCG CGTGTGCGTCGCATCACTCTTGAGGTGAGGGGAGTGATATGTCATTGAAC TTTCGACATGGCGCTTTCTGTGGACAGCACCGTCCCCCCGTCTTCTGTTG TTGATCGAGGCTTGCGGAGTATTGGCCAAGAAACAAGCACCTATTTCTAT CGCATAGTTCTTGTTTCGGCGGGCCAATGGCTGTTGAAATTGTTGAGGGT TATCGTTATCAGTTTTTGGTGATGAGTGCTGCGTACAAGAGAAACGCTGT GGCCATTCGGGGGTTGCTTTCTGGGTTCTTGCGGCAGGGTTTCCCATGGG TTGGTTGACCCCAGGTACCGGGAAAATTGTGTTTTCATCGGTATGGCTTC ACACTGCGGTAGGCCCTACCCTGAGACCTCAGAAGACTGAAGGACCTCGT GAATCACAAACACAGGAGCGTCCGCAGATGCCATCGGGAGCATGGACTCG AAGATGAGCATTGCGCAGCACACCAGCCACGTCCGCATAACACGAGGAAA CTACCTAACTTTGTGGACCCAAAATAGGTAGTTTTGGCCTTTCTGCTCTT GCGTACCTTGAGCTCCTAAACATTCAGCAGTTGCCCGTGCGATCGTGTCT TCACCTGTTACGTGGCACGTCGATCGTTTTGGTACGAACTATGTGAAACG TTTGCCGAATTCGACCGTTTCCTATGTGGAGACCACCTTCATGAAAGAAC AATCTCCCCAACGTCTGTCGAGGACGATCCCCTCTTTCCATATTGGCGTT TCGACGAAGCGTTTTCTCCTAGTCGAATTTGTATTCGCAGTAGCACAAAC AGCATGACCTTGGTACAAACCCTCTTCACCCTCCTCCCGGCTCGAGTTTT TTCGGGGGAGAGGAAAAATCACCCACAGCAGTGGCTTCACTGGGGTTTTA AGTGGGGCATCTCAATCCGGCATCACCAGCGCGGTCTGCGGATCTTACAG TGTGGATGGTTTGGGCCTCAGTTGCCAAACTACCAATATCTCCATTCGTG GCGCTATCTGTTTGCTTCGCCGGTTTCTTGTTCTTGTATTGTTATTACCG TTGAGCCAGAAGTAACTGCTGTCACGTTACCCTCGCTCCCGCTTCAACTG TCCATTGTCCTGGGTGTTCCGTTTCAAGCTTTGATCCCGAATCGCGTGCT TACTTGCAGGCATTCGGTGAAGCCTTGACTGGGATGTACGACAATAGCGG CGGGCGCAAGTTGCGGTGTTCGTCACCCTCTCTCTGCCGCGCGAGGGATT ACGGCCTTGACTGCTGTTCAGGAGTTCTCCGATATCCAGCGGGCGCGGCT CACGAAGAGCTGATCTGTCCAAGGAATAGACGGGGACCCTTTGCTTGGGA AGTTTGGGCGAAACTGTTGTCACATTTTTCTGACTGTGTATATTCCGTAG TTGGTGCGAACGTATGAAAACCAAGATCTGTTTCAGCCCCTTTTGGCGGA AAATGAAAATGATAAGACACCGGGCAGCTTCGATCACTGCTGCCCTGAGA CTTGGGCCCGCAGAGAAGTGTATGCCGCTGCTTCACCGATACGACCATGA TGGCCACATGCTTGTGCTGGCGGCCAGGGAGGGACCGTGACGTTGTCTGC CACTTGCACCACATGCTTCATTGGTGCGACATACGTATTCTTTGTGACGA TGGGTCCACTTGGTGAACAACGAGTTCAACTTTGTGCCAAGCAGCTCCCT TGGCGGTATCCAACGAGTCCTCCGTCGCTAATATTCCCAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig913:4910..7649+

>mRNA_Ecto-sp8_S_contig913.30442.1 ID=mRNA_Ecto-sp8_S_contig913.30442.1|Name=mRNA_Ecto-sp8_S_contig913.30442.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp8_S_contig913:4910..7649+ (Ectocarpus species8 EcLAC_412)
ATGGGTTTTCTTTCATTACGAGCCGTGACACCACTGCACGTCGCGGCTGC
GAAAGGACGCACGGGTGCGTTGAGGGAACTGCTTCGTGCGAAGGCGAACC
CAGCCGCGAGTGCAATTTCAACATCGAGGTCATCGCCATACGGGACAACT
GTCGTTCCACTGGATATAGCTGCCTGCGCCGGGTACTCGGACGTGGTGCG
CGAGCTAGTTCAGGAGGTTGGGATTGAAGGGTGTGATGCTACAAATGCCG
GGGAACAAGCTCTCCACCTTGCCGCAATGAACCAGCACATGGACATTATG
GCCATCCTGACCGGAGCCGGCGTGCGCGACACGATGGGCTATGTTCTCCT
TGGAACCGCCGGATTGGGCCGTGAGGCATCCGTCCAGTTTCTCTTGCGGC
AGCGACGCAAGGAGAGTGAAATGAGCGTTCATGCGTACGCCAACTCCAGC
GACGGTTCCGGCATGACACCCCTGAGTTGCAGTATTGAGTGGTGCAGCTC
TGGGAGTCCCAGGATCGTGCGGTTGCTCGTTGATGCTGGAGCAGATACGA
CATCGGCCGTTCGAGTCACGAACTCGAACGGAGGGGTGGAGTACAACGAC
ACACCTCTGGCTGTCACAACCTCGTTCCTCCGCGAGAAGGCTGTAGACGG
CAAACCCGCTACGGAGGAGCAGCTGCACAGGCTGCAGGCCATCCGTCGCT
TGCTGTTGCGAGTCGACGCAGTCCATGCGGTGTCTTGGCTGTGGCCAAGC
GATGCCCCCTCCATCGTCCATGCTGTAGAGAGGTCCCGTGGTCCCGAGCC
GCGTAGGCCACCGCTGAGCCTGACGTTGCCAATCCTGAAGCGACGGGCAA
AGACACGTCGCGTGTGCGTCGCATCACTCTTGAGGCATTCGGTGAAGCCT
TGA
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