mRNA_Ecto-sp8_S_contig913.30441.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig913.30441.1
Unique NamemRNA_Ecto-sp8_S_contig913.30441.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig913.30441.1 vs. uniprot
Match: A0A6H5L675_9PHAE (Cytochrome b561 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L675_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 1.720e-128
Identity = 186/191 (97.38%), Postives = 190/191 (99.48%), Query Frame = 1 
Query:    1 MEGLMQKLKVVLDKITTARARVVAASKSPAWVKPRFLTHIMGPVIALIVIASTFSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAITMLAMVMQVVVGRLKHMSFTSGVIDARNRGKKYRWHGKAS 573
            MEGLMQKLKVVLDKITTARARVVAA KSPAWVKPRFLTHIMGPVIA+IVIASTFSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAIT+LAMVMQVVVGRLKHMSFTSGVIDARNRGK+YRWHGKA+
Sbjct:    1 MEGLMQKLKVVLDKITTARARVVAAFKSPAWVKPRFLTHIMGPVIAVIVIASTFSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAITLLAMVMQVVVGRLKHMSFTSGVIDARNRGKRYRWHGKAN 191
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BLAST of mRNA_Ecto-sp8_S_contig913.30441.1 vs. uniprot
Match: D8LSC7_ECTSI (Cytochrome b561 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC7_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 5.970e-128
Identity = 187/189 (98.94%), Postives = 189/189 (100.00%), Query Frame = 1 
Query:    1 MEGLMQKLKVVLDKITTARARVVAASKSPAWVKPRFLTHIMGPVIALIVIASTFSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAITMLAMVMQVVVGRLKHMSFTSGVIDARNRGKKYRWHGK 567
            MEGLMQK+KVVLDKITTARARVVAASKSPAWVKPRFLTHIMGPVIALIVIASTFSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAIT+LAMVMQVVVGRLKHMSFTSGVIDARNRGKKYRWHGK
Sbjct:    1 MEGLMQKMKVVLDKITTARARVVAASKSPAWVKPRFLTHIMGPVIALIVIASTFSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAITLLAMVMQVVVGRLKHMSFTSGVIDARNRGKKYRWHGK 189
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BLAST of mRNA_Ecto-sp8_S_contig913.30441.1 vs. uniprot
Match: A0A7S1CMU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMU4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.180e-10
Identity = 54/171 (31.58%), Postives = 80/171 (46.78%), Query Frame = 1 
Query:   55 RARVVAASKSPAWVKPRFLTHIMGPVIALIVIASTFSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAITMLAMVMQVVVGRLKHMSFTSGVIDARNRGKKYRWHGK 567
            R+R  AA + P+W+  R +   +G V A  V A   +      LFS H   M  A V+ +   +  Y +           +      +R  H  L + A   A +G+  I GNKV    +++P + H  VGA TM+A+V+Q  VGR+K        I+A  R K YRWHG+
Sbjct:   52 RSRSAAAPRGPSWL--RLMAVGVGVVWAACVGAEVVAVVGWATLFSFHPLPMLAACVLAVAATMTYYGD---------AKTEADVQAQRAQHRVLMMGAVGCAVVGMLAIFGNKVQRGKTLVPTSLHAWVGAATMVAVVVQAAVGRMK--------IEALPR-KVYRWHGQ 202
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BLAST of mRNA_Ecto-sp8_S_contig913.30441.1 vs. uniprot
Match: A0A8C5PYS4_9ANUR (Ascorbate ferrireductase (transmembrane) n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PYS4_9ANUR)

HSP 1 Score: 53.9 bits (128), Expect = 1.870e-5
Identity = 42/110 (38.18%), Postives = 57/110 (51.82%), Query Frame = 1 
Query:  160 FSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAITMLAMVMQVVVG 489
            F      +LFS H   M LAF  LM E ++ +      DS S + S   K + R  H  LQ+LA + A LGL  I  NKV +       TWHG++GA+T+L  V+Q + G
Sbjct:   36 FVSQPGASLFSWHPFLMTLAFSFLMTEAILVFSP----DS-SLLRSFSRKVRARA-HWILQLLAVVCALLGLGIIYTNKVQNGKPHFV-TWHGLLGAVTVLWSVVQSMGG 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig913.30441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L675_9PHAE1.720e-12897.38Cytochrome b561 domain-containing protein n=1 Tax=... [more]
D8LSC7_ECTSI5.970e-12898.94Cytochrome b561 domain-containing protein n=1 Tax=... [more]
A0A7S1CMU4_9STRA1.180e-1031.58Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8C5PYS4_9ANUR1.870e-538.18Ascorbate ferrireductase (transmembrane) n=1 Tax=L... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig913contigEcto-sp8_S_contig913:629..4156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size576
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionCytochrome b561 domain
Ec32 orthologEc-21_003210.1
Cds size576
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681145262.2031658-CDS-Ecto-sp8_S_contig913:628..7511681145262.2031658-CDS-Ecto-sp8_S_contig913:628..751Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig913 629..751 -
1681145262.2158246-CDS-Ecto-sp8_S_contig913:1492..16031681145262.2158246-CDS-Ecto-sp8_S_contig913:1492..1603Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig913 1493..1603 -
1681145262.2290742-CDS-Ecto-sp8_S_contig913:1812..19601681145262.2290742-CDS-Ecto-sp8_S_contig913:1812..1960Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig913 1813..1960 -
1681145262.2419324-CDS-Ecto-sp8_S_contig913:2268..23811681145262.2419324-CDS-Ecto-sp8_S_contig913:2268..2381Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig913 2269..2381 -
1681145262.2547731-CDS-Ecto-sp8_S_contig913:4075..41561681145262.2547731-CDS-Ecto-sp8_S_contig913:4075..4156Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig913 4076..4156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig913.30441.1prot_Ecto-sp8_S_contig913.30441.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig913 629..4156 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig913.30441.1

>prot_Ecto-sp8_S_contig913.30441.1 ID=prot_Ecto-sp8_S_contig913.30441.1|Name=mRNA_Ecto-sp8_S_contig913.30441.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=192bp
MEGLMQKLKVVLDKITTARARVVAASKSPAWVKPRFLTHIMGPVIALIVI
ASTFSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSN
GTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGA
ITMLAMVMQVVVGRLKHMSFTSGVIDARNRGKKYRWHGKAS*
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mRNA from alignment at Ecto-sp8_S_contig913:629..4156-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig913.30441.1 ID=mRNA_Ecto-sp8_S_contig913.30441.1|Name=mRNA_Ecto-sp8_S_contig913.30441.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3528bp|location=Sequence derived from alignment at Ecto-sp8_S_contig913:629..4156- (Ectocarpus species8 EcLAC_412)
ATGGAGGGCCTGATGCAAAAGCTGAAAGTTGTGCTCGACAAGATCACCAC
CGCCAGGGCACGGGTGGTTGCAGCTTCTAAGGTGAACAAGCGCATGCGAT
GACGACGTCGATGGCCGCACATCTAACGGACGTGCTGTTTGTTCCGTTGC
GAAGTCATCATCATGAGCGGAGAGGTGTTCTTTGGGCAACACCTGGGGGG
CGTCCTTGACGTTGGGCTATGGTTGTAGGAGCCACACTTGCTGGCTATGT
CCATTGCGCCAGCGCTGTTTGGAAAAGACAAGAGAAGAAGGACTATGAGA
TACTGCTCTAAACACAGCAGTAGGATTTCTTTTGTAATTGCCCCGCAGTG
AAGAAATCAGACGGAGAGCCAGCGCACAACAGCCCCCCCTGCCCTCCCCC
CTCTCTCTGGCGCGCGTCTTGCTCTCTTGAGGATGTCGCTTCAGGCTTGA
TTCGTAACAACTTGCTCTTGCTGTCAAACCCAACCTACAGTAGGGTGGTG
GTCTGCTTGCTGTAAATATTTGGGTGATCCGATGGTTTGACTGCCGCGAG
GTGTGATCCGTTGATTGGTCAAAGTTAGGGTTAGGGGGTATGCACACAGA
ATACAGAAAGAACTTATGTTGTGGCTATGTGAGCTCACACATGTTTCTTG
CAACTAGTGAGTTTAATCGTCCACATCTTAATAACGACAAGAACAGGGAT
ACCTACCCATTGGTCAAATAGTGTCGGTGGCGCAACGGTTTTTATGTGGA
ACTGCTATGTAGCGATGCGGACGAAATACTATGCCCAGTATCCAGCCGGT
TCCCCCCCCGGTCACTGCGAAGACTTCAACACACACCCTTCAACTACGGT
GTTACCTCGAACGGATAGTCCATCTGTAATTGTGTGTATATTTTCTAATA
ACCAGAGACGGGCGGGGGGAGGGGATATTGGGAGAAAGGGTGATCGGGAG
AGGAACGATAGAGAAAAGAGAATGGATCGGCTTGGACCAGGCATGCCCTC
AAGTTGTTGTCCCACTAGGCTACGTGTGACAAACCCATCCAGCAGTTGGC
GCCCGGAGACAATTAACGTCAATTTCGTGTCGACCCAGCTCCTTACTTTC
GTCGCCACCATGAAGTCAAGCACAGGCTGTTTTACCACGGAAGTAGGGTA
GGATCCACCGCTGCGCTAAGCTGTGTTTCTTAACCCTGCTTGCTTTTTTT
TTTCGGGAAAACTTGCGATTCGATTCCTTGCGACGGAAATGCGGGCGCCT
ACTGCTGTATCTGACCGTGTTGCGCGAGAGAGGGTTGCACGCCGACGTTT
GACGCCCAAACTCCCCCCCGCCCCCCTGGTTTCGGAACAGTGTACGTGTG
CCCAAGGTGTGCATGCCGCCTAACACCCCAACAAAGCAAGACAACCTTCT
GGTTAGGTCGGGTGGGAAAGGAGTATTTAGTCCACCATCTTGCAGCACCT
TGTTACTTCGGTGCTGGCTCCGACGGTCTCGCGTAACACGGGCTGCCTTC
GCCACGGCTACAACGACGTCGAAATCCATCGATAGTTTCATAATTGTGTC
GAACCACGGCTGTTCCGACTCCGATCCCGACTTGTCGCGAGAGGTTTTCC
GCTGCTTATCGTCACCCCAGAAAAACGTCACGGCCTTTTCTGGAATAGAA
AAGGACAAAGGTTTTCCACACATTTTTTCGATTTGAGCGAAGCGACATGT
TTCCTCGAGAACAACACACACAACACGCTCTTGCGCTCTGCCTCTGCTCG
TGCGTCCCGTTTTTCGTTTGAACAGAGCCCTGCATGGGTGAAACCGAGGT
TCCTGACGCACATAATGGGCCCAGTCATCGCGCTGATCGTCATCGCGTCC
ACTTTCTCCAAGACGGAGAGCCTCAACCTCTTTAGCTTGTGAGTGTCTTT
TTCTGGCGTGTTCGTTAGTCGTTGTCCTTAGTGGGATGTTACTGCTCCTG
CTACCGTTGCCGCTGCCGCGGCTGCGGCTGCTGCTGCTGCTGCCGCCGCC
GCTGATGTTGCGGCGATGATGTTGATGTTGCGCTATGTTACGTTCCAACA
CTCGCCAGCCGCTGCAAACCCAGCGTGCTATGTAGCCAAACCGGTGCTTG
CGCTGCACACGAACCACGGACAGCTTGCTTTAACCGCCGTACCGTGTGCA
TGTATGTCTCCACGGGGGTATGTACCGAAAAAAACACAAAACGCAGACAC
GCGACGTGCATGGCCTTGGCCTTCGTGGTGCTAATGCCGGAGGGAGTCGT
GGCCTACAGGAATCACCTGCTCCTGGACTCGCTGAGCCCGATCATGTCCA
ACGGGACAAAGGCAAAGAAGAGAACGATTCATTTGACGCTACAGGTGCGT
GGCCCGGCGGCCAAAAACAAGAGTCTCGAGAAGGAAAACAGTTTATGCGT
ATGCTTGTGCGACCAGAGGGAAGTGTTGGTGGGACCCCGGCTCTCGTTTT
TGTTCCTGCGATGTCGTAGCACTCGTTTATGTTTTGCGTACTTGCTCCGC
GTGTTTTGCCTTTTTTTTTCGTGTGTTGTTTCTGTTGTCTCTTGTCGCTG
CAGGTCTTGGCGTCCATGTTTGCCGCGTTAGGACTGTTTTTCATTGCGGG
AAACAAGGTGTACCACAGGAACAGCATCCTGCCGCGAACCTGGCACGGCG
TGGTTGGCGCCATCGTAAGTACTTCTCACCGATATCCTGTTCATGTTTAC
TGGTTGTGATATTTTTCTACTTCAATTTTGTGTTGTGTTTCAGTTTTGTC
ACTCCGTAACAGAAAAGCCTCCTGCAGTCCTTCATCAAGAGTTGATAGCT
GTTAATCGGACGCGGGGGGAAAGGCAAGCAGTTCAAGGCAGTTGCAAGCC
AGCACATTTTGCGTTTTTGCAAGGGGAACATTCCGGCTTTTCCGCCGTAC
GGTACGAAACCCTTTGGACATAAATGCCATCTCGAAGGTTTCTCAACCCA
CAGAACCGGGTATGTTCATGCTCATCGCACAACGCAATCGTGTTCGTGAG
TACAATGCGGGTTCGTTCGTGCCAGTTGTACCGTACAGCAGTTGGTGCGT
ATTCCCGTGGCTCTCTTGGCTTTCTTCCCGCTGCTCTTCCCCTTGCGCGC
GTTCGTTGGTCTCGCTGGCCCCAAAGAGGACTCGCTAGATGTAGATGACT
CTCAGCTCGGTTTTCGGCATCGAGAAATATGCGTGATGTACGGGACCCCT
TTGTCGGAACGTTTTGACCTTGCTGCTGCTTCTCCCTTAGGAGAGGAGGG
GGCGTAGTCCTGGGTAAACCTGCTGCTGCCGCCGCCGCTGACGACGACGT
TTGGTACGCTGCTGATGCTGGAAGCTATTGTTGTTGCTGTTGCTGTTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTCG
TTCAGACTATGCTGGCCATGGTGATGCAAGTCGTGGTGGGGCGGTTGAAG
CACATGAGCTTCACGAGCGGTGTCATCGACGCCAGAAATAGGGGCAAGAA
GTACCGCTGGCACGGGAAGGCGAGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig913:629..4156-

>mRNA_Ecto-sp8_S_contig913.30441.1 ID=mRNA_Ecto-sp8_S_contig913.30441.1|Name=mRNA_Ecto-sp8_S_contig913.30441.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp8_S_contig913:629..4156- (Ectocarpus species8 EcLAC_412)
ATGGAGGGCCTGATGCAAAAGCTGAAAGTTGTGCTCGACAAGATCACCAC
CGCCAGGGCACGGGTGGTTGCAGCTTCTAAGAGCCCTGCATGGGTGAAAC
CGAGGTTCCTGACGCACATAATGGGCCCAGTCATCGCGCTGATCGTCATC
GCGTCCACTTTCTCCAAGACGGAGAGCCTCAACCTCTTTAGCTTACACGC
GACGTGCATGGCCTTGGCCTTCGTGGTGCTAATGCCGGAGGGAGTCGTGG
CCTACAGGAATCACCTGCTCCTGGACTCGCTGAGCCCGATCATGTCCAAC
GGGACAAAGGCAAAGAAGAGAACGATTCATTTGACGCTACAGGTCTTGGC
GTCCATGTTTGCCGCGTTAGGACTGTTTTTCATTGCGGGAAACAAGGTGT
ACCACAGGAACAGCATCCTGCCGCGAACCTGGCACGGCGTGGTTGGCGCC
ATCACTATGCTGGCCATGGTGATGCAAGTCGTGGTGGGGCGGTTGAAGCA
CATGAGCTTCACGAGCGGTGTCATCGACGCCAGAAATAGGGGCAAGAAGT
ACCGCTGGCACGGGAAGGCGAGTTAG
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