mRNA_Ecto-sp8_S_contig1194.2260.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1194.2260.1
Unique NamemRNA_Ecto-sp8_S_contig1194.2260.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1194.2260.1 vs. uniprot
Match: A0A6H5KCP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP4_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.610e-32
Identity = 104/173 (60.12%), Postives = 107/173 (61.85%), Query Frame = -3 
Query:   47 DGHRTVVTGFSAPPQPSTAAWGRQQSSTRATSTTGTTAMQQCGLATASXXXXXXXXXCGSFAAGGLGCGDGEAQAMASSAAAEVAAAVVPGVLRRMSPSRRSTAAAAVAPLGARPPTTEEMDAEWEGILSGDDXXXXXXXXXXXXXXXXXXXXXXXLLATDASEGGLLGDEAE 565
            DGHRTVVTGFSAPPQPSTAAWGRQQS  R                   XXXXXXXXX                    +S+AAEV+AAVVPGVLRRMSPSRRSTAAAAVAPLGARPPTTEEMDAEWEGILSGDD                       LLATDAS GGLLGDE E
Sbjct:   29 DGHRTVVTGFSAPPQPSTAAWGRQQS--RTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTSSAAEVSAAVVPGVLRRMSPSRRSTAAAAVAPLGARPPTTEEMDAEWEGILSGDDEQEDVDEGDEDDDATAMLSDEE-LLATDASVGGLLGDEGE 198
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BLAST of mRNA_Ecto-sp8_S_contig1194.2260.1 vs. uniprot
Match: D8LK22_ECTSI (30S ribosomal protein S1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK22_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 5.030e-7
Identity = 63/68 (92.65%), Postives = 63/68 (92.65%), Query Frame = -3 
Query:    2 MDAEWEGILSGDDXXXXXXXXXXXXXXXXXXXXXXXLLATDASEGGLLGDEAEGEEXXXEEEGVERGR 205
            MDAEWEGILS   XXXXXXXXXXXXXXXXXXXXXXXLLATDASEGGLLGDEAEGE XXX EEGVERGR
Sbjct:    1 MDAEWEGILSDXXXXXXXXXXXXXXXXXXXXXXXXXLLATDASEGGLLGDEAEGEXXXXXEEGVERGR 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1194.2260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCP4_9PHAE1.610e-3260.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK22_ECTSI5.030e-792.6530S ribosomal protein S1 n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1194contigEcto-sp8_S_contig1194:335..907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size573
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143249.5310352-UTR-Ecto-sp8_S_contig1194:334..4471681143249.5310352-UTR-Ecto-sp8_S_contig1194:334..447Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1194 335..447 +
1681143249.5468025-UTR-Ecto-sp8_S_contig1194:858..9071681143249.5468025-UTR-Ecto-sp8_S_contig1194:858..907Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1194 859..907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143249.5390706-CDS-Ecto-sp8_S_contig1194:447..8581681143249.5390706-CDS-Ecto-sp8_S_contig1194:447..858Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1194 448..858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1194.2260.1prot_Ecto-sp8_S_contig1194.2260.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1194 448..858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1194.2260.1

>prot_Ecto-sp8_S_contig1194.2260.1 ID=prot_Ecto-sp8_S_contig1194.2260.1|Name=mRNA_Ecto-sp8_S_contig1194.2260.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=137bp
MAVASSSSSSSSSTSSCSSSPERIPSHSASISSVVGGRAPSGATAAAAVE
RREGDIRRRTPGTTAAATSAAAELAIACASPSPQPSPPAAKEPQRRLRRC
RREEAVANPHCCIAVVPVVLVARVLDCCRPHAAVEG*
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mRNA from alignment at Ecto-sp8_S_contig1194:335..907+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1194.2260.1 ID=mRNA_Ecto-sp8_S_contig1194.2260.1|Name=mRNA_Ecto-sp8_S_contig1194.2260.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=573bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1194:335..907+ (Ectocarpus species8 EcLAC_412)
CTCGGCCCCGCTCAACACCCTCCTCCTCCTGCTCGTCCTCCTCCCCCTCC
GCCTCGTCGCCCAACAGGCCGCCCTCGCTGGCGTCCGTCGCAAGCAGCTC
TTCGTCGCTGAGCATGGCGGTTGCATCATCGTCTTCGTCGTCTTCATCAT
CCACGTCCTCTTGCTCGTCATCGCCAGAGAGGATCCCCTCCCATTCCGCG
TCCATCTCCTCCGTGGTGGGCGGGCGGGCACCAAGCGGTGCCACCGCTGC
TGCTGCTGTTGAACGTCGAGAGGGTGACATTCGTCGGAGAACGCCGGGCA
CCACCGCAGCAGCAACCTCTGCTGCTGCGGAGCTTGCCATCGCTTGCGCT
TCGCCATCGCCGCAACCGAGCCCGCCTGCAGCAAAAGAACCACAGCGGCG
TCTCCGCCGATGCCGCCGGGAGGAAGCTGTTGCCAATCCACACTGCTGCA
TTGCTGTGGTGCCTGTGGTGCTGGTTGCACGTGTGCTTGACTGCTGTCGT
CCCCACGCCGCGGTTGAAGGTTGAGGAGGGGCCGAGAACCCCGTGACTAC
GGTGCGATGCCCGTCACCGCTGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1194:335..907+

>mRNA_Ecto-sp8_S_contig1194.2260.1 ID=mRNA_Ecto-sp8_S_contig1194.2260.1|Name=mRNA_Ecto-sp8_S_contig1194.2260.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1194:335..907+ (Ectocarpus species8 EcLAC_412)
ATGGCGGTTGCATCATCGTCTTCGTCGTCTTCATCATCCACGTCCTCTTG
CTCGTCATCGCCAGAGAGGATCCCCTCCCATTCCGCGTCCATCTCCTCCG
TGGTGGGCGGGCGGGCACCAAGCGGTGCCACCGCTGCTGCTGCTGTTGAA
CGTCGAGAGGGTGACATTCGTCGGAGAACGCCGGGCACCACCGCAGCAGC
AACCTCTGCTGCTGCGGAGCTTGCCATCGCTTGCGCTTCGCCATCGCCGC
AACCGAGCCCGCCTGCAGCAAAAGAACCACAGCGGCGTCTCCGCCGATGC
CGCCGGGAGGAAGCTGTTGCCAATCCACACTGCTGCATTGCTGTGGTGCC
TGTGGTGCTGGTTGCACGTGTGCTTGACTGCTGTCGTCCCCACGCCGCGG
TTGAAGGTTGA
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