mRNA_Ecto-sp8_S_contig11920.2247.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11920.2247.1
Unique NamemRNA_Ecto-sp8_S_contig11920.2247.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11920.2247.1 vs. uniprot
Match: A0A6H5KPF6_9PHAE (EngB-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPF6_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 3.970e-80
Identity = 145/175 (82.86%), Postives = 150/175 (85.71%), Query Frame = 1 
Query:    4 SLGGALASTMRPWRSLYACACCYLLPLSSAMRLATSTARSAGFATRAATAAARYSSSSRRPSGLSAATPPSWAAGRDSSGLSAGVLQQPQQLQQPQRHPSGKLFAGGAAGCVGGATTYGGARCPLVGSGGGSSRAFSGGKRPKLRGRARWERGRAGALGMGKGLGRKKAKKEQVR 528
            SLGGA+ASTMRPWRSLYACACCYLLPLSSAMRLAT+TARSAGFATRAA             SGL+AA PPSWA GRDSS LSAGVLQQ   L Q QRHP GKLFAGGAAGCVGGATTYGGARCPLV SGGGS+RA SGGKRPKLRGRARWERGRAGALGMGKGLGRKKAKKEQ +
Sbjct:    3 SLGGAIASTMRPWRSLYACACCYLLPLSSAMRLATNTARSAGFATRAAXXXXXXXXXXXXXSGLAAARPPSWATGRDSSRLSAGVLQQXXXLHQQQRHPCGKLFAGGAAGCVGGATTYGGARCPLVISGGGSTRALSGGKRPKLRGRARWERGRAGALGMGKGLGRKKAKKEQAK 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11920.2247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KPF6_9PHAE3.970e-8082.86EngB-type G domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11920contigEcto-sp8_S_contig11920:5562..6095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score271.6
Seed ortholog evalue2.7e-70
Seed eggNOG ortholog2880.D7G7B8
Model size534
KEGG koko:K03978
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.GTP binding
EggNOG OGsCOG0218@1,KOG2486@2759
Cds size534
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143248.7771444-CDS-Ecto-sp8_S_contig11920:5561..60951681143248.7771444-CDS-Ecto-sp8_S_contig11920:5561..6095Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11920 5562..6095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11920.2247.1prot_Ecto-sp8_S_contig11920.2247.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11920 5562..6095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11920.2247.1

>prot_Ecto-sp8_S_contig11920.2247.1 ID=prot_Ecto-sp8_S_contig11920.2247.1|Name=mRNA_Ecto-sp8_S_contig11920.2247.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=178bp
MSLGGALASTMRPWRSLYACACCYLLPLSSAMRLATSTARSAGFATRAAT
AAARYSSSSRRPSGLSAATPPSWAAGRDSSGLSAGVLQQPQQLQQPQRHP
SGKLFAGGAAGCVGGATTYGGARCPLVGSGGGSSRAFSGGKRPKLRGRAR
WERGRAGALGMGKGLGRKKAKKEQVRR*
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mRNA from alignment at Ecto-sp8_S_contig11920:5562..6095+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11920.2247.1 ID=mRNA_Ecto-sp8_S_contig11920.2247.1|Name=mRNA_Ecto-sp8_S_contig11920.2247.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=534bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11920:5562..6095+ (Ectocarpus species8 EcLAC_412)
ATGTCTCTGGGCGGTGCTCTAGCCTCCACGATGAGGCCCTGGCGCTCGCT
GTACGCCTGCGCCTGCTGCTACCTGCTCCCTCTCTCCTCCGCCATGCGCC
TGGCCACCAGCACCGCCCGGTCCGCTGGGTTCGCGACAAGGGCAGCGACG
GCGGCGGCGCGATACAGCAGTAGCAGTCGGAGACCAAGCGGCCTCTCCGC
CGCCACGCCGCCGTCGTGGGCAGCAGGCAGGGATTCGTCGGGATTATCCG
CGGGTGTCTTGCAGCAACCGCAGCAGCTGCAGCAACCGCAGCGTCACCCT
TCTGGGAAGCTGTTCGCCGGCGGTGCTGCTGGTTGCGTCGGCGGTGCAAC
AACGTACGGCGGTGCCCGGTGCCCGTTGGTGGGCAGCGGAGGCGGCAGTA
GCAGGGCCTTTTCGGGGGGCAAGCGGCCCAAGCTCAGAGGGAGAGCAAGG
TGGGAACGGGGGAGAGCAGGGGCGCTGGGGATGGGCAAAGGGCTGGGTCG
CAAGAAGGCCAAGAAAGAGCAGGTGCGTCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11920:5562..6095+

>mRNA_Ecto-sp8_S_contig11920.2247.1 ID=mRNA_Ecto-sp8_S_contig11920.2247.1|Name=mRNA_Ecto-sp8_S_contig11920.2247.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11920:5562..6095+ (Ectocarpus species8 EcLAC_412)
ATGTCTCTGGGCGGTGCTCTAGCCTCCACGATGAGGCCCTGGCGCTCGCT
GTACGCCTGCGCCTGCTGCTACCTGCTCCCTCTCTCCTCCGCCATGCGCC
TGGCCACCAGCACCGCCCGGTCCGCTGGGTTCGCGACAAGGGCAGCGACG
GCGGCGGCGCGATACAGCAGTAGCAGTCGGAGACCAAGCGGCCTCTCCGC
CGCCACGCCGCCGTCGTGGGCAGCAGGCAGGGATTCGTCGGGATTATCCG
CGGGTGTCTTGCAGCAACCGCAGCAGCTGCAGCAACCGCAGCGTCACCCT
TCTGGGAAGCTGTTCGCCGGCGGTGCTGCTGGTTGCGTCGGCGGTGCAAC
AACGTACGGCGGTGCCCGGTGCCCGTTGGTGGGCAGCGGAGGCGGCAGTA
GCAGGGCCTTTTCGGGGGGCAAGCGGCCCAAGCTCAGAGGGAGAGCAAGG
TGGGAACGGGGGAGAGCAGGGGCGCTGGGGATGGGCAAAGGGCTGGGTCG
CAAGAAGGCCAAGAAAGAGCAGGTGCGTCGTTGA
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