mRNA_Ecto-sp8_S_contig1182.2135.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1182.2135.1
Unique NamemRNA_Ecto-sp8_S_contig1182.2135.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1182.2135.1 vs. uniprot
Match: A0A6H5L4Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q8_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 3.450e-43
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 2 
Query:  176 MGTPFPWLPMLALAIGLVSHSYSLSSLFPYVGFMVQHLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSS 439
            MGTPFPWLPMLALAIGLVSHSYSLSSLFPYVG+MVQHLGV DDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSS
Sbjct:   33 MGTPFPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSS 120
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BLAST of mRNA_Ecto-sp8_S_contig1182.2135.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 6.550e-43
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 2 
Query:  176 MGTPFPWLPMLALAIGLVSHSYSLSSLFPYVGFMVQHLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSS 439
            MGTPFPWLPMLALAIGLVSHSYSLSSLFPYVG+MVQHLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSS
Sbjct:    1 MGTPFPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSS 88
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BLAST of mRNA_Ecto-sp8_S_contig1182.2135.1 vs. uniprot
Match: A0A6H5KX19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 4.260e-41
Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = 2 
Query:  167 ARGMGTPFPWLPMLALAIGLVSHSYSLSSLFPYVGFMVQHLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSS 439
            ARGM TPFPWLPMLALAIGLVSHSYS SSLFPYVG+MVQHLGV DD+DEAGYYAG LASAFMVGRF   XXXXXXADRYGRLPVVYIGLSS
Sbjct:   66 ARGMETPFPWLPMLALAIGLVSHSYSFSSLFPYVGYMVQHLGVTDDRDEAGYYAGCLASAFMVGRFATSXXXXXXADRYGRLPVVYIGLSS 156
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BLAST of mRNA_Ecto-sp8_S_contig1182.2135.1 vs. uniprot
Match: D8LRH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 3.520e-35
Identity = 64/86 (74.42%), Postives = 73/86 (84.88%), Query Frame = 2 
Query:  182 TPFPWLPMLALAIGLVSHSYSLSSLFPYVGFMVQHLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSS 439
            TPFPWLPMLA+AIGLVSHSY+L+SLFPYVG+MVQHLGV DDKDEAGYYAGY++SAFMVGR          AD +GRLPV+Y GL+S
Sbjct:   24 TPFPWLPMLAIAIGLVSHSYALTSLFPYVGYMVQHLGVTDDKDEAGYYAGYVSSAFMVGRVGSSYFWGRFADSHGRLPVIYAGLTS 109
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BLAST of mRNA_Ecto-sp8_S_contig1182.2135.1 vs. uniprot
Match: A0A7R9UB92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB92_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 5.800e-19
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 2 
Query:  188 FPWLPMLALAIGLVSHSYSLSSLFPYVGFMVQHLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSS 439
            +P   +L  A+ + +H++SL+SLFPYVG+MV  +G  DD D+AGYYAG++ +AFM GR          ADRYGR PV+ IG +S
Sbjct:   26 YPLRQLLVAAVAMFAHAFSLTSLFPYVGYMVVDIGATDDVDKAGYYAGFVGAAFMAGRTVSSFFWGIYADRYGRKPVILIGCAS 109
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BLAST of mRNA_Ecto-sp8_S_contig1182.2135.1 vs. uniprot
Match: D8LJX6_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX6_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.680e-16
Identity = 41/84 (48.81%), Postives = 51/84 (60.71%), Query Frame = 2 
Query:  188 FPWLPMLALAIGLVSHSYSLSSLFPYVGFMVQHLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSS 439
            FP   ++ LA+ +  HSY+L SLFPYVG MV  L   +  +EAGYYAGY+ASAF  GRF          D  GR PV+ +GL S
Sbjct:   35 FPTRVVVILALAMTVHSYTLVSLFPYVGMMVSDLLSLETLNEAGYYAGYVASAFTFGRFLSGYAWGYVTDSAGRKPVIVLGLMS 118
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BLAST of mRNA_Ecto-sp8_S_contig1182.2135.1 vs. uniprot
Match: A0A6H5K5T8_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.800e-14
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 2 
Query:  188 FPWLPMLALAIGLVSHSYSLSSLFPYVGFMVQHLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSS 439
            FP   ++ LA+ +  HSY+L SLFPYVG MV  L   +  +EAG+YAGY+ASAF  GRF          D  GR PV+ +GL S
Sbjct:   34 FPTRLVIILALAMTVHSYALVSLFPYVGMMVSDLLSLETLNEAGFYAGYVASAFTFGRFLSGYAWGHVTDSAGRKPVIVLGLMS 117
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BLAST of mRNA_Ecto-sp8_S_contig1182.2135.1 vs. uniprot
Match: A0A0J8B533_BETVV (MFS domain-containing protein n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B533_BETVV)

HSP 1 Score: 74.3 bits (181), Expect = 1.040e-13
Identity = 31/80 (38.75%), Postives = 54/80 (67.50%), Query Frame = 2 
Query:  191 PWLPMLALAIGLVSHSYSLSSLFPYVGFMVQHLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIG 430
            PW  ++++ I ++ ++  +SSLFP++ FM++   +A+ +++ GYYAG++ SAFM+GR          ADRYGR P++ IG
Sbjct:   35 PWKTLISIWIVVLCNALPISSLFPFLYFMIRDFHIAEREEDVGYYAGFVGSAFMLGRALTSIFWGMLADRYGRKPIIIIG 114
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BLAST of mRNA_Ecto-sp8_S_contig1182.2135.1 vs. uniprot
Match: A0A8J2SZ25_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZ25_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.130e-13
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 2 
Query:  185 PFPWLPMLALAIGLVSHSYSLSSLFPYVGFMVQHLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLS 436
            PFPW   + LA+   +H Y++ SLF Y GF+V  LG + + DEAGY AGYL SA +VGR          AD +GR P + + ++
Sbjct:   11 PFPWRQCVVLALCNAAHFYTICSLFSYAGFLVVDLGWSPNVDEAGYVAGYLGSALVVGRLFTSVLWGRLADAFGRKPAILLSMA 94
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BLAST of mRNA_Ecto-sp8_S_contig1182.2135.1 vs. uniprot
Match: A0A7S1CJ88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJ88_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.920e-13
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:  212 LAIGLVSHSYSLSSLFPYVGFMVQHLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSS 439
            LAI L +++ +++ LFP+VGFMV+ LG+  D+ E G+YAG++ SAFMVGR          +D++GR PV+ +GL S
Sbjct:   57 LAIVLFANALNVTMLFPFVGFMVEDLGMTHDRAELGFYAGWIGSAFMVGRTCTSFAWGTWSDKHGRRPVLLLGLVS 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1182.2135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Q8_9PHAE3.450e-4397.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRH7_ECTSI6.550e-4398.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX19_9PHAE4.260e-4190.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRH9_ECTSI3.520e-3574.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9UB92_9STRA5.800e-1948.81Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
D8LJX6_ECTSI3.680e-1648.81MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K5T8_9PHAE4.800e-1447.62MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0J8B533_BETVV1.040e-1338.75MFS domain-containing protein n=3 Tax=Beta vulgari... [more]
A0A8J2SZ25_9STRA1.130e-1342.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1CJ88_9STRA2.920e-1346.05Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1182contigEcto-sp8_S_contig1182:12639..15322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score157.9
Seed ortholog evalue2.1e-36
Seed eggNOG ortholog2880.D8LRH7
Model size441
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
Cds size264
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143241.7839653-UTR-Ecto-sp8_S_contig1182:12638..128051681143241.7839653-UTR-Ecto-sp8_S_contig1182:12638..12805Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1182 12639..12805 +
1681143241.7938323-UTR-Ecto-sp8_S_contig1182:14660..146681681143241.7938323-UTR-Ecto-sp8_S_contig1182:14660..14668Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1182 14661..14668 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143241.8024724-CDS-Ecto-sp8_S_contig1182:14668..148101681143241.8024724-CDS-Ecto-sp8_S_contig1182:14668..14810Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1182 14669..14810 +
1681143241.8197818-CDS-Ecto-sp8_S_contig1182:15200..153221681143241.8197818-CDS-Ecto-sp8_S_contig1182:15200..15322Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1182 15201..15322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1182.2135.1prot_Ecto-sp8_S_contig1182.2135.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1182 14669..15322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1182.2135.1

>prot_Ecto-sp8_S_contig1182.2135.1 ID=prot_Ecto-sp8_S_contig1182.2135.1|Name=mRNA_Ecto-sp8_S_contig1182.2135.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=88bp
MGTPFPWLPMLALAIGLVSHSYSLSSLFPYVGFMVQHLGVADDKDEAGYY
AGYLASAFMVGRFATSYFWGRFADRYGRLPVVYIGLSS
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mRNA from alignment at Ecto-sp8_S_contig1182:12639..15322+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1182.2135.1 ID=mRNA_Ecto-sp8_S_contig1182.2135.1|Name=mRNA_Ecto-sp8_S_contig1182.2135.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2684bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1182:12639..15322+ (Ectocarpus species8 EcLAC_412)
CAGAAACCGGATCTCGTGAGGTGTGTGCTCTGTGCCCTCCTCAGCAGTTT
TGTGGACAATACGCGTCCCACATGCGCTGTGACTTGCCAACCAGATCCAC
CAGTGGTCACTCCCGTCGCGCGCAGGACTACGTCCAAGCTTCACCGACTG
GAACCTGCTTTGAATTGGTGAGCAACACGTTGCAACGTATGCATGCATAC
TTGAACTGACACAGGCAGGGCGCATCGACGCTATTTGAAGATACACACAA
AGCGGCGGAGTTGAGTGATGCATGGCTGCTACTGTCGCTGATGAGCTCAA
GCTGTCATTTCATGGGTTTCCCTCTATTCCTGTCGCTATTGGTGTTCGGG
AGAAATCGTTTGACATCGAAGAGCTCCGCTCGAAGAGTAACTCTCTCTCA
TGATCCGGCAACCAGGTACTGTAGGTATTATAGTGGTACACTACGGGCCA
GTTTGAACTTTGAACCTAGCACACGACGGCACTGCAGGTGCAAGATGGGA
CAAAAAATGACAAAACGTCCCTGTGTTACCCTCCTCCTGTGCGATCCAGA
CTGATGCGTCAATATATATATCGAAAGGGTCTGCTGGCGCTGATGGCGCC
ACTGCTGCTCTGTGTGCTGCGTAGATGGAACGAAAATACACACGACGATC
GATCGGGCATTCGAAAAAATCAAGACAAACATCCATACACACTCCAACAA
TATTGTAGCGCTACAGGAATGTTAGCTAAGAGAACGGTGAAAGCAAGAAG
AATGATGAAAACAGCAACAACATGCGAGTGAGTATAATTTTAGGAAAATA
AATACACACCCAGAGAGACTACCCGTTCGAGATATAATAACCACAGTCGA
ACGGATGTGTTGGGGGTCTTGTCATTGAGTGGAGGAAAGAGGAAAACAAA
CGGGCTGGGTACTGGACTTGCGACACCCCCTCACGGGGTCCCAGACCATG
GCTTTTGGAAGAGTTTTGTGCTTCCAACCGCACTGAGACTGGCGTATTTT
CGTTGTTTAGCCGGTTAGCGCGGTCGATGCCGATAATAAAGACACAAACA
CAATCAAACTCGAGTGATCGACTTCCACGGCCCAGGGACAGGATCTATAT
GTCCCCACATGCTCGCGGAGTACTTGAACCAAAACGTGTTGCCACATATT
GCACCGAGCACATATAGTCGCGTTCAGCGAGCAACAACAACAGCAACAGC
AGCAGTACCACCAACAGGCCCTCATGCACACTAGGCAGACTATTCCCTGG
TACCTGAACGTCATCAGTGTTGCACATTGCCGTGTTGACCTGATCGCTCA
CACCACACACAAGCCGGTCTCGAGTTGTAGCCGAATCCGGTTGCTCCTTA
TGAGAGCTTTTGACTCTGCTGAGTCCGCACTACATGGGTTGTATGGCGTG
TCCTTCAGGGAGTGTCGGGTCGCGCGGTGAAAAAGTGAGTTCCTGTTCGT
GCTTTGTCTTCTTCCTTCTGGGCTCCAGTCTTGTAGTCTACTTCACCTTT
CGGTATGCGTTTGATGCACCAGCCTGTCCTCCTTCTGTGCGTGCCTTCAA
GCTTCAAACGCTGTTAGAAGGGTTCACCCATCTCTTCTCTCTTGTATCTC
GCATCTTTTTGTAAATTCTCGGTATGCGTTGACTTTTACCCTCCGGAGAT
ATCCGAAATAATTCACAACCCATGTACGATTCAGAGGTTTACGAGAAGCA
GGCTCGAAAACATGGCGATAATCACAATATTCAGTGTGATTGGAGAAAGA
GGCAGTAAAGCCCCACAGCCAACGTATTCGCAGAGCAACTTTTACAAGCT
GGGTATCTCTTGTAGATATAGAATGGGCTGTATCTTGAAGAACAACTAGT
TGTACTTTGTTTTTTTTTATCCCCAGAGGTACAATGCAAAAGCAAGCATC
CGATGTCGGATCCGACACCCGGGACGTATACGTGTGGGGATATGCAGTGG
GTGCGAACGGCGACTGAAAGCAGACCGACGCCCTCCCACAAACGGTTCCG
TCGTCGCGCGTCTTTCCAACAGCCAGGGGCATGGGAACTCCTTTTCCATG
GCTGCCGATGCTCGCCCTCGCAATCGGCCTCGTGAGCCATTCGTACTCCC
TCTCAAGCCTTTTCCCCTACGTGGGGTTCATGGTGCAGCACCTCGGGGTC
GCCGACGACAAGGATGAGGCTGGTGAGTGGTGCACTCGCACTCATGAGTG
TGTGGCTGTTGGAACGGCACATGCCACCCTCTTGGCCCAGGGATTCGTTC
ATGGGAGGGGCGAGATCCTGAAAAGGTGTGTTGAATCGAGACGCATTTTA
CACACGCATTACGTGACGCTTTCGGCCTTAACAAACTAGGTGCCTTCGCG
TGCCATACTGCATGTGTAACGTGTTGCACCCACCCAATCAAACATGTTGT
CAGCACCGCGCTAGGCCAGCAGCTCACGTACACACACCAACTCAGCTCAA
CACCACCGGGAAGAGGACATCCAACCAAATCTCCACGCGCAGAAAACTGT
CGACCTCCCACCGCCCCCCCGCTCGAACGAACAAAACACACGAAACGAAC
ACCAACCAACAGGATACTACGCCGGCTACCTGGCGTCCGCCTTCATGGTT
GGTCGGTTCGCCACCTCGTACTTCTGGGGCCGCTTCGCAGACCGCTACGG
GCGGCTGCCGGTGGTGTACATCGGACTCAGCTCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1182:12639..15322+

>mRNA_Ecto-sp8_S_contig1182.2135.1 ID=mRNA_Ecto-sp8_S_contig1182.2135.1|Name=mRNA_Ecto-sp8_S_contig1182.2135.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1182:12639..15322+ (Ectocarpus species8 EcLAC_412)
ATGGGAACTCCTTTTCCATGGCTGCCGATGCTCGCCCTCGCAATCGGCCT
CGTGAGCCATTCGTACTCCCTCTCAAGCCTTTTCCCCTACGTGGGGTTCA
TGGTGCAGCACCTCGGGGTCGCCGACGACAAGGATGAGGCTGGATACTAC
GCCGGCTACCTGGCGTCCGCCTTCATGGTTGGTCGGTTCGCCACCTCGTA
CTTCTGGGGCCGCTTCGCAGACCGCTACGGGCGGCTGCCGGTGGTGTACA
TCGGACTCAGCTCC
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