mRNA_Ecto-sp8_S_contig11812.2131.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11812.2131.1
Unique NamemRNA_Ecto-sp8_S_contig11812.2131.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11812.2131.1 vs. uniprot
Match: D7FYJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ5_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 5.590e-43
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 2 
Query:    2 NIADFYGGGESDDDEEETGYSMDAYNKGVLLNQAAEVGTHTEDGQLRPQASSERDQQKLAHLVRVGKLGAALRGKGVTSGKRR 250
            NIADFYGGGESDDDEE TGYSMDAYNKGVLLNQAAEVGTHTEDGQLRPQASSERDQQKLAHLVRVGKLGAALRGKGVTSGKRR
Sbjct:  850 NIADFYGGGESDDDEEGTGYSMDAYNKGVLLNQAAEVGTHTEDGQLRPQASSERDQQKLAHLVRVGKLGAALRGKGVTSGKRR 932
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11812.2131.1 vs. uniprot
Match: A0A6H5K8A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.120e-37
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 2 
Query:    2 NIADFYGGGESDDDEEETGYSMDAYNKGVLLNQAAEVGTHTEDGQLRPQASSERDQQKLAHLVRVGKLGAALRGKGVTSGKRR 250
            NIADFYGGGESDD+E+E G+ MD YNKGVL  Q  E GTHTEDGQLRPQASSERDQQKLAHLVRVGKLGAALRGKG TSGKRR
Sbjct:   96 NIADFYGGGESDDEEKE-GFGMDPYNKGVLSGQFPEAGTHTEDGQLRPQASSERDQQKLAHLVRVGKLGAALRGKGGTSGKRR 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11812.2131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYJ5_ECTSI5.590e-4398.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8A6_9PHAE1.120e-3785.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11812contigEcto-sp8_S_contig11812:155..1887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size274
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143241.3927596-UTR-Ecto-sp8_S_contig11812:154..1751681143241.3927596-UTR-Ecto-sp8_S_contig11812:154..175Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11812 155..175 -
1681143241.424462-UTR-Ecto-sp8_S_contig11812:1823..18871681143241.424462-UTR-Ecto-sp8_S_contig11812:1823..1887Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11812 1824..1887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143241.4080334-CDS-Ecto-sp8_S_contig11812:175..2801681143241.4080334-CDS-Ecto-sp8_S_contig11812:175..280Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11812 176..280 -
1681143241.4160688-CDS-Ecto-sp8_S_contig11812:1739..18231681143241.4160688-CDS-Ecto-sp8_S_contig11812:1739..1823Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11812 1740..1823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11812.2131.1prot_Ecto-sp8_S_contig11812.2131.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11812 176..1823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11812.2131.1

>prot_Ecto-sp8_S_contig11812.2131.1 ID=prot_Ecto-sp8_S_contig11812.2131.1|Name=mRNA_Ecto-sp8_S_contig11812.2131.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=63bp
MDAYNKGVLLNQAAEVGTHTEDGQLRPQASSERDQQKLAHLVRVGKLGAA
LRGKGVTSGKRR*
back to top

mRNA from alignment at Ecto-sp8_S_contig11812:155..1887-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11812.2131.1 ID=mRNA_Ecto-sp8_S_contig11812.2131.1|Name=mRNA_Ecto-sp8_S_contig11812.2131.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1733bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11812:155..1887- (Ectocarpus species8 EcLAC_412)
CAACATCGCCGACTTTTACGGCGGCGGGGAGTCTGACGACGATGAAGAGG
AAACGGGGTACAGCATGGATGCCTACAACAAGGGCGTGCTGTTGAACCAG
GCCGCGGAGGTGGGAACGCACACGGAAGACGGGCAGCTTCGGCCGCAGGT
GAGCCTAGCAGCTAGCAGCAGCAGCTTTACGCACGGCAACTGCTGTTTGT
GGCGTGAATGGTGACGTCGTGTGGTGTTGGTGGTGTTGCTGTCGTCGTCA
TCGCCGTGTTGGTTGTTTTGCTGTTGTGGTATGTGTTGCTCGCGTTGGTG
TGAGAGCGTTGCCTGGCCTTCGTTTTTCTGCGTTTGGTCGATGGCATTCA
TTCATTCGTGTCATGTGGAAAGTGCTGGAACCACGTGGCGCAATTCTGAA
GAGCAGGGATTGCCGCGGTAACCACGTAGTGCGTGTCGTGTTGTCCCGCC
GCTTGGCTTGTTTTCACGAACGTTCCTTGCTCACTCCTTCCCCTGCATTC
TCTACTGTACGCTAGCCTAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG
ACTTGGGGTCATATTCAACGCTTCCTGTCCGTGAGACTCCCGAGGGTGTA
TTTACCCTCCGCGCTGCTGCTATATTCCGATGCTGATATCCCCCCTTCCC
GGCGAAAACGGGGCATATCGCTCCGTCCCGGCATTGTAGGGATGCGAGGT
CTACGGTCTTTAGACTTAAGACTTCTACGGCTTGCGTTTACATTAGTACC
GCCCCCGCCCCCCTGTACGCTGGATACGGAGAGTCTAAAAGGGTTCAAGG
AGAAGATATCTGTTGCTTTTGCACAGAGAGAAAAACAAAATCTCAGAAAA
GAAACCAAGGATAAGGAGGGCATAGAAGTGTACGGAAATATTGAAAGAAG
GAATAGGGTTCAAGGAGGACCTACATGGACCAATGGATGCAGGGACAAAG
CTGAAGGTCAAATCCAGGACCGGGGACATTGGCCTCCGATAATGTAGACG
AAGATATAGGAAGGTAGACGATGAAGACGCCAAGCTTAAATGTGATTGCG
GCTCCGAGTGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCGGCTGTAC
AAGAAGGGAGAGGAAAGTGTACATGACTGAGCTGGGAAAAGTAGAAAAAA
GTACAGGGAGATGTTTGAGGCATGGGATAGCCAGGAGGAGACGTTAGCTG
TACTGGGTTGAAAAGGGGGAAAGTGATGTCGGTAGGATAGATAAGACTAG
GTACGACATTTCTGAGCCACCTTTGGCAAAGTAGGAAGGAACGATTGGCC
GTCGGTGATCGGTCTTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGT
GGTCAATGGTCTAACCGCTAAGGCATGCAAAACATAAGAGTACGCGCCCC
CCCCCTCCCCTGCTCTTCCCGTTGCGTGTTGTGACGCCCTCTGCGTATCT
TGCAAACTTGACATGTTCGCTGCTTCCAAACCACCACCACCCTCTGCGTT
GCTACACTATTCATTGCTCATGTATCCCCCCCCCGTCCGTTGCGTTTTTG
TGACGCTCGCCGTGTATCACGCCCTGTCTTGCACACCATCGCCACGTTGG
ATGCCAGGCGAGCTCGGAGCGCGACCAGCAGAAGCTCGCCCACCTCGTGA
GGGTGGGAAAGCTAGGCGCCGCCCTCCGAGGGAAGGGCGTCACCTCGGGG
AAGCGGCGGTAGGTAGGGAGTAGATAGGACGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11812:155..1887-

>mRNA_Ecto-sp8_S_contig11812.2131.1 ID=mRNA_Ecto-sp8_S_contig11812.2131.1|Name=mRNA_Ecto-sp8_S_contig11812.2131.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11812:155..1887- (Ectocarpus species8 EcLAC_412)
ATGGATGCCTACAACAAGGGCGTGCTGTTGAACCAGGCCGCGGAGGTGGG
AACGCACACGGAAGACGGGCAGCTTCGGCCGCAGGCGAGCTCGGAGCGCG
ACCAGCAGAAGCTCGCCCACCTCGTGAGGGTGGGAAAGCTAGGCGCCGCC
CTCCGAGGGAAGGGCGTCACCTCGGGGAAGCGGCGGTAG
back to top