mRNA_Ecto-sp8_S_contig11805.2122.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11805.2122.1
Unique NamemRNA_Ecto-sp8_S_contig11805.2122.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11805.2122.1 vs. uniprot
Match: D8LIG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG6_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 2.030e-79
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:    1 QVDWVSHCTINEPDGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWWDAIMRNPNVVPAKASSTTPRRSPASEGAPCLAGTAKCAAPGGR 357
            +VDWVSHCTINEPDGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWWDAIM+NPNVVPAKASSTT RRSPASEGAPCLAGTAKCAAPGGR
Sbjct:  202 KVDWVSHCTINEPDGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWWDAIMQNPNVVPAKASSTTRRRSPASEGAPCLAGTAKCAAPGGR 320
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BLAST of mRNA_Ecto-sp8_S_contig11805.2122.1 vs. uniprot
Match: A0A6H5JAD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAD8_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 2.370e-58
Identity = 89/101 (88.12%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:    1 QVDWVSHCTINEPDGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWWDAIMRNPNVVPAKASSTTPRRSPAS 303
            +VDWVS CTINE DGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWW+AIM+NPNVVPAK S     RS AS
Sbjct:   59 KVDWVSRCTINEADGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMDLVAKDDVMYAKAYREQYYGGPTTAWWEAIMQNPNVVPAKVSMDLKERSLAS 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11805.2122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIG6_ECTSI2.030e-7997.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAD8_9PHAE2.370e-5888.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11805contigEcto-sp8_S_contig11805:1924..6181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score247.7
Seed ortholog evalue2.8e-63
Seed eggNOG ortholog2880.D8LIG6
Model size360
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2CHM3@1,2T2RF@2759
Ec32 ortholog descriptionRed chlorophyll catabolite reductase
Ec32 orthologEc-18_003740.1
Cds size360
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143240.849163-CDS-Ecto-sp8_S_contig11805:1923..20161681143240.849163-CDS-Ecto-sp8_S_contig11805:1923..2016Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11805 1924..2016 -
1681143240.8611882-CDS-Ecto-sp8_S_contig11805:3700..37941681143240.8611882-CDS-Ecto-sp8_S_contig11805:3700..3794Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11805 3701..3794 -
1681143240.8758428-CDS-Ecto-sp8_S_contig11805:4516..45591681143240.8758428-CDS-Ecto-sp8_S_contig11805:4516..4559Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11805 4517..4559 -
1681143240.888064-CDS-Ecto-sp8_S_contig11805:5054..51121681143240.888064-CDS-Ecto-sp8_S_contig11805:5054..5112Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11805 5055..5112 -
1681143240.898757-CDS-Ecto-sp8_S_contig11805:6109..61811681143240.898757-CDS-Ecto-sp8_S_contig11805:6109..6181Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11805 6110..6181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11805.2122.1prot_Ecto-sp8_S_contig11805.2122.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11805 1924..6181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11805.2122.1

>prot_Ecto-sp8_S_contig11805.2122.1 ID=prot_Ecto-sp8_S_contig11805.2122.1|Name=mRNA_Ecto-sp8_S_contig11805.2122.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=120bp
QVDWVSHCTINEPDGSTRECLRAWVMPMFDVPHLSITLGSGPNGLTAEMD
LVAKDDVMYAKAYREQYYGGPTTAWWDAIMRNPNVVPAKASSTTPRRSPA
SEGAPCLAGTAKCAAPGGR*
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mRNA from alignment at Ecto-sp8_S_contig11805:1924..6181-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11805.2122.1 ID=mRNA_Ecto-sp8_S_contig11805.2122.1|Name=mRNA_Ecto-sp8_S_contig11805.2122.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4258bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11805:1924..6181- (Ectocarpus species8 EcLAC_412)
CAGGTCGACTGGGTGTCCCACTGCACCATCAACGAGCCTGACGGCAGCAC
TCGCGAGTGCCTGCGGGCGTGGGTGAGTCCTGAGACGACGAACGTAGCGT
AGCGCTCGCCCCGATGCTCGTGCGAGTCAGCACACTGGTACTGCTGTAGC
ATGGAAGTCTTCAGGATCCTCTCTTGGGGAAGGGCTTGCCTCAAAGCCGA
GTGCACGTTTCTATCCAGTGCCAGCGATGTTTATATATCACTAATCACTG
TAGGAGTTTTCATCTCACCTGGTGGCACACCTAGCCCCGAGAGAGAATGC
GAACAGGGTCGTGCCCCCCCCCCCCTACAAATATTGAGTGTCGGTTTTCT
CTTGAGACTTTTCAAGAGTTGCGAGAAAAACTGGATCCTGAAGGGACGGC
TAGTTTTTTAGCGATTGGGAGCGCCCCGTGCCTCTCTAGCCCCCTCGCTC
TAACACACAGCGCTTGGGGTCTCCCTACCATATGTTTTTTTTCGATTGTT
ATTTTGTTTTCAGCGGTTACTTCCCGAAGAGGGCCATACTTCCAAGTCGA
CATTACTCAACTTACAACCTTCGGCCTATGTATGCATGTAAAAGGAAAAA
ATAACTACTTCCAAGTCGAGATTACTCAACTACAACCTTGGGCCCTATTC
ATGAAAAAGGAATAAAAAAACTGGAGTTTTTTGTTCTAGTTTTGCGGACC
TGTGTCGTCGGTGGCATGCGTGTCTCTGAGCGGGGCGTACGGCGCGGTTG
GGGCACGGCACGTAGGGCGACACCGAAATTTCGACTCAAGGTTCACTTTG
GACCATGAATGACAGAAACGGTTTCGACACAAGGTTCACTTTGGCGACCA
AGCGGCAGAAACAGCAGTCGTACGTACCTCTCTTCTCCGTTCGTTGACTT
CTCTTCGCCGTTCGTTGACTTCTCTTCGCCGTTCGTTGACTTCTCTTCTC
CGTTCGTTGACTTCTCTTCGCCGTTCGTTGACTTCTCTTCGCCGTTCGTT
GACTTACCTTCGCCGATTGCGTTCTCCGCCCCGCCACGTCATGTGTCACG
TTCTCCTGGAACTCACCAGGTCATGCCGATGTTTGACGTGCCTCACCTCT
CCATCACTCTCGGGAGTGGCCCTAACGGTGAGAGCGCGGTGTCTCCCTGC
TTCTACCGCCTGCTTACATCATGTTTTTTGGTTTGCTCTACCAGTGTTCT
TTTGTGGTTGGGGGTGGTGTGGTAGGTGGTGGTCGGCTTGTCGTGTCGTA
CGTCACGGTGCCGTGATGTGTTGTATTTATTTGATGCTTCCACCGCATAG
GGTTTGCAGTATCATGCTCTTTGCAGGCCGTTTCGATTGCAAAAACGAAG
CAGCTACCGCCGCAGTTTCATACCCCGGAACTCGTTTGGCCATCTGCTTG
GGTAAGGACGGCAGTATGGAGGTGTTCGATAAAGAAAAGTTTCGTTGCAG
TTACAACAACAACAACAACAACAACAACAACAATGACTACGACGACAAAC
CACCATTAGCAACAGCAACAGATCTTGACTATCCCACCTTCTCTCTCGTG
CCTCCGTCTTTTTTTCATGCATGCAATTTATGAAACTTCCGACCGTTTCT
ACGGCGGGGTAACTGATGGTAGGTCTCACGGCGGAGATGGACCTGGTCGC
CAAGGATGACGTCATGTAAGTTTTTCGGATTTTTTTCTTGTAGCTTTCGG
GCAATTGCCATCGCAGCTTCGCTGACGAAAATACTGAAGCTTTGGTTCTG
GAAGATCATTGCGGGCTGCTGATGCTGTTGTTGGCCCTTGGGCTCTAGCT
ACGGCACATGTTGTTCCTCCGATGTGCTTCCCGCAAGGGCGCTTGTAATA
CCCACAACCAGGAGATGTCGGGAGTATGAATAGGACGTTTGAGCAACTGT
TGCGTGTTTACAATAGCTCGTCCCATCTACTCTATGGAGACTATGATAGT
CTAGGTACATCACCTCCAGCCACTTCGGCACTGCAGAGGGCACAGCAGAT
TGTACTGTGAGCTTGTCATGGTGAAGCAAGGGTCTTCCTGTTGAGCTCTA
CTGGATGAACGCGTCACCAACACGACCTTGTCGGTTATTCGGGTACGATG
CTGCATAGGCGACTGCTCCCCGCCAGTGGCCCTGCCGATGCCGTTGTTGC
CCTTACAAGTTGTATTTTCGCAAGATGATGCCGTCGTGTAGCCTAGCCCT
GCTGATGCCGTTGCTCGTGCTGGTCGCGTTTTGCACGATGACGGCGTGTA
GCTTAACCCTGCTGATGCCGTTGTTGGCACGATTGGCAACCCTGCTGCTC
TTGGCAAGCTGCGTTTGAGCACGAGACGGCGGTGACGGTGAGTAGCTCAT
GCCACCCAATGCCGTGATTTCTTTTTTTATTGTGCAGGTACGCCAAGGCT
TACCGCGAGCAGTACTACGGCGGGCCGACGACGGCATGGTGGGACGCGAT
CATGCGGAACCCGAACGTGGTCCCGGCTAAGGTTAGTAGCGTTGTTTTCG
ATCCTATCAATGCCATCGTTGTTGTTGTGATAATTCCTTGCTGTTGTTGT
TTTCCCGTGCTAGACTGCAGCACTGTTTTGTTTTTTGTTGTTGATGTTTC
GTGTTGGGTGTTGAACGTGTTGATGTCAGTAGTTTTTGGTTGCTTCAATA
AAAGCTGCAGCACTTCGGTGTACTGGCCCGTATGTGCTTGCTTACCGCAG
ACAGTCTCCCTGTGCTTGCTTTTTGTCGGGGGGGTAATCCCTGACACCCC
CCCCCCGAGACGGGTGCAAACAAAATGAGCAAAAGTACGTCGTCCCCCCC
CCCTGTTTTTTTCTCGACCTAGGTGTCTATGGGCCTGAAGGAACAATGCC
TATGTTTATCGCAAGGCAGACAAGACGTTCACGACGCAGCACCCGCCCGT
CCTGGCGGTCAACGGTTGGACGACTACGGCATGCATTTACATGAGTCCCC
CCCCCCCCCTCCCCCCATTTGGTCTTTTTCTACCCAGGTGTCGATGGACT
TGAAGGAACGCTCGCTGGCCTCGCCGGTGCACTTTAGCGTTACCATGCCG
GACACTGCGGAGAACGCCGCCGTGCTTGGGAACGCCGCGCAGGAGATCGC
CGCTATCTGGCTGGGTGAGAATTGGTTCTCTGTTGTTAGTAGCTGGTCTG
TTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTTCCGTGTTTCTTCTT
TTGGTTTAGATCGATCGTGTTACCCGGCTGACCAATGAAAATGCGGCAGT
CACATACAAAATGCTAAGTAAACGGGGGGAGGGGGGGGGCGGAGGAGAGT
TGACGACAGCGGTATGTGTGTGTGTGCCGATGTGTGTTTTCTCTCTTGTT
CTGGTGCTGTCATGACACCCATATGTGCCTGTTTCAGCGGCCATGGGCTA
CGTATGTATTTGGCGATGAATGGCAGTCAGCTAGCTCCCCAGCCATCGCT
CGAGATGATCGAAACAGATATTTTCAGATTTTTCCCTTTGCCCTCTTCTC
GGCGTGATGGGAAACTTCTTTGACGTTAAGGCGTGGACGAACATTTTTTG
TCTTCCCAACGTGCAGGACACAGGTCAAGCCTTGCTTCGACTGACCTGGA
CCAGCGAATGATTCAGAAGGACACGGTCTTGTGACGCGTCCGTCGGTTTG
TGTTGTCCTTCCCCTTACTTGACTCTCTCGTCCTTTTGTCTTATTGTCGT
GTCGACAGGAGTTCTTCGATTGAGCTCAATTAGCGAATGATGCACACAGT
CTTATGATGCATCCGTCGGTTTTGTCTAATCCTTTCTTTTCCCTTGTCTT
GCTGTCGTGTCGAAAGGCTCCCCCGCCATACGGCACGTCGGTTTCTCCGA
TCTTCTTTTGCCTGTGTCTTCTCAAAGATGCCATTGCACTTTCTTGTGTA
TTTTTGTCTTTTTGTCGTGTGGACAGGCTTCCTCGACATACTGTACATCG
GTTTCTCCGATCTTCTTTTGCCTGTGTCTTCTCAAAGATGCCACTACACT
TTCTTGTGTATTTTTGCCTTTTTGTCGTGTCGAAAGGCTTCCTCGACATG
TTCCTATACCTCGGTTTTCTCTTATCCTTCTGTCTTCTCTGGCCTGTGTC
TTCTCGAAGATTCCACTGTTAACAACCTTTCTTGTCCCCTTTTTGTCTCT
TTGTCGTGTGGACAGGCTTCCTCGACGACGCCGCGGAGATCGCCCGCGTC
CGAAGGGGCACCATGCTTAGCCGGGACAGCGAAGTGCGCCGCACCTGGTG
GGCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11805:1924..6181-

>mRNA_Ecto-sp8_S_contig11805.2122.1 ID=mRNA_Ecto-sp8_S_contig11805.2122.1|Name=mRNA_Ecto-sp8_S_contig11805.2122.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11805:1924..6181- (Ectocarpus species8 EcLAC_412)
CAGGTCGACTGGGTGTCCCACTGCACCATCAACGAGCCTGACGGCAGCAC
TCGCGAGTGCCTGCGGGCGTGGGTCATGCCGATGTTTGACGTGCCTCACC
TCTCCATCACTCTCGGGAGTGGCCCTAACGGTCTCACGGCGGAGATGGAC
CTGGTCGCCAAGGATGACGTCATGTACGCCAAGGCTTACCGCGAGCAGTA
CTACGGCGGGCCGACGACGGCATGGTGGGACGCGATCATGCGGAACCCGA
ACGTGGTCCCGGCTAAGGCTTCCTCGACGACGCCGCGGAGATCGCCCGCG
TCCGAAGGGGCACCATGCTTAGCCGGGACAGCGAAGTGCGCCGCACCTGG
TGGGCGGTGA
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