mRNA_Ecto-sp8_S_contig1171.2050.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1171.2050.1
Unique NamemRNA_Ecto-sp8_S_contig1171.2050.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1171.2050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1171contigEcto-sp8_S_contig1171:10463..12191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1209
Hectar predicted targeting categoryother localisation
Exons3
Cds size714
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143235.3557236-UTR-Ecto-sp8_S_contig1171:10462..109571681143235.3557236-UTR-Ecto-sp8_S_contig1171:10462..10957Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig1171 10463..10957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143235.3649669-CDS-Ecto-sp8_S_contig1171:10957..113441681143235.3649669-CDS-Ecto-sp8_S_contig1171:10957..11344Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1171 10958..11344 +
1681143235.3739166-CDS-Ecto-sp8_S_contig1171:11652..117771681143235.3739166-CDS-Ecto-sp8_S_contig1171:11652..11777Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1171 11653..11777 +
1681143235.382426-CDS-Ecto-sp8_S_contig1171:11989..121911681143235.382426-CDS-Ecto-sp8_S_contig1171:11989..12191Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1171 11990..12191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1171.2050.1prot_Ecto-sp8_S_contig1171.2050.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1171 10958..12191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1171.2050.1

>prot_Ecto-sp8_S_contig1171.2050.1 ID=prot_Ecto-sp8_S_contig1171.2050.1|Name=mRNA_Ecto-sp8_S_contig1171.2050.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=238bp
MVHSRTIGWGGTSVQFDARKRFKLLGELPNVEFGHSFSRSPLEGLKPIPD
GTCLSSPYSPLYARSTAATPKDNSPGVLATGDVSHIYFLRRFCLQDGNEV
GQNTQQEQSRLQKRPRAVLFCLMRFEYNVADVRDHVDRLRDVDVVRKFPL
AALPQSTRNEAEHNSQQSEPKHAPRLVPPHRSRFTTWVTQQAPGITLSLS
AWLDRDGVDTTTTKITEFDQKRVLTKDALILSYSRRPG
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mRNA from alignment at Ecto-sp8_S_contig1171:10463..12191+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1171.2050.1 ID=mRNA_Ecto-sp8_S_contig1171.2050.1|Name=mRNA_Ecto-sp8_S_contig1171.2050.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1729bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1171:10463..12191+ (Ectocarpus species8 EcLAC_412)
CTCCATGATCTGCCGCATGTATTTATTAGCAGATCTCTCGTATTCGGCCT
CCTCCCGAGTCTTGTCGGCGAGATGTGTGATCGCCTGAGAACGAAGGTGA
GTGAGTTTCGAGAACTCTGGGAAAGGAAAAATATTTTCGAGAGCAACGAT
TGGATCAGACTATGTGAGCAACACTCACCTTCGTCCGAATTTCCACTAAC
GGTTATAAAGCAACGTCAGGCGCCAAACAATGGTGAAGTATGAGTTGGTA
CAGTAGGTCAAAATTTTCTTCTCTCTCGTGTCGGAGTCGGAGGCAAAGTG
GTTTTGTTGGTGGTGCGGCGGTGGGGATTCGCGTGGCACCCATTGCATGG
GCGTTCTGTCGGCACAAGACGAAGGAGGAATGTGCAGCTTTTCTGATGAG
GACTCGATTGGAATCACGCCGTATCATTCGGCCATTTCTGGTGACGACTC
GATTTGAATCAGGCCGCGTCGTTCGGCCATAAGCCGCACAGACCGATGGT
GCACAGCAGAACAATAGGATGGGGAGGCACATCGGTTCAATTCGATGCTC
GAAAGCGTTTCAAACTCTTGGGGGAATTGCCTAATGTGGAGTTTGGCCAT
AGTTTCAGTAGAAGCCCACTTGAAGGTTTGAAGCCGATCCCTGATGGAAC
ATGTCTTTCGTCTCCGTACTCCCCACTCTACGCACGGTCAACTGCAGCCA
CGCCCAAGGACAACTCACCTGGTGTACTTGCCACCGGCGATGTCAGCCAC
ATTTATTTCTTGCGTCGTTTTTGTTTGCAGGATGGCAACGAGGTGGGGCA
AAACACGCAGCAGGAGCAAAGCCGCCTCCAGAAACGCCCGCGAGCAGTTT
TGTTTTGCCTCATGCGCTTCGAATACAACGTGGTGAGCTATCCTTAGTCG
TGGCTGATGGTGCATGGATTGAACTAGAGGTGGTTGTTTCCCTGATGTTG
GCTGTTGGGCGTGTAGGTCAGGTAGGGTTGTTGGTCTTGCGTCATGTTCT
AAAGGCCACATTCTACGCGAGGTTTCGTCGTTGTTCATGTTGACTGCAAG
GGAGTTGGATTGAGCTCATTGCCTTCGCCGAGGCCCACATGCGTGTACCC
AGAACTTTTGGGCAAGCCTTTTTCGTCCTATAACTTCGGTTCCGATTGTT
GACTGTTGTGCTTGGCGTCGTTCCTCGTCGACTGTGGCAGGCCGATGTAC
GGGACCATGTCGATCGACTTCGGGACGTGGACGTGGTGAGAAAGTTTCCT
CTCGCCGCCCTACCGCAGTCGACGAGGAACGAAGCCGAGCACAACAGTCA
ACAATCGGAACCAAAGTGAGTGATAGTACGAAAAAGGCTTGCCCAAAGGT
TCTGGGTACACGCATGCATGTGGGCCTCAACGAAGGCAAACCTTCAGGAT
GTTCAGTGCACCAGTGGCCACCCCATTCCAACTTTCTTCTCGAATCATGT
AAACCAATACGTTTTGCGTCCTCTCTCGCCTCAAACCAAACCTCATCCCC
TCACCGCTATCTACGTTTGGTCCACAGACACGCACCCCGACTTGTACCAC
CTCACCGGAGTCGGTTCACCACATGGGTAACACAACAAGCACCGGGCATT
ACGTTGTCGTTGTCCGCCTGGCTGGACAGGGATGGCGTCGATACGACGAC
GACAAAAATCACCGAATTCGACCAGAAACGTGTGCTGACCAAGGACGCCT
TGATCCTTTCGTACAGTCGCCGACCAGGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1171:10463..12191+

>mRNA_Ecto-sp8_S_contig1171.2050.1 ID=mRNA_Ecto-sp8_S_contig1171.2050.1|Name=mRNA_Ecto-sp8_S_contig1171.2050.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1171:10463..12191+ (Ectocarpus species8 EcLAC_412)
ATGGTGCACAGCAGAACAATAGGATGGGGAGGCACATCGGTTCAATTCGA
TGCTCGAAAGCGTTTCAAACTCTTGGGGGAATTGCCTAATGTGGAGTTTG
GCCATAGTTTCAGTAGAAGCCCACTTGAAGGTTTGAAGCCGATCCCTGAT
GGAACATGTCTTTCGTCTCCGTACTCCCCACTCTACGCACGGTCAACTGC
AGCCACGCCCAAGGACAACTCACCTGGTGTACTTGCCACCGGCGATGTCA
GCCACATTTATTTCTTGCGTCGTTTTTGTTTGCAGGATGGCAACGAGGTG
GGGCAAAACACGCAGCAGGAGCAAAGCCGCCTCCAGAAACGCCCGCGAGC
AGTTTTGTTTTGCCTCATGCGCTTCGAATACAACGTGGCCGATGTACGGG
ACCATGTCGATCGACTTCGGGACGTGGACGTGGTGAGAAAGTTTCCTCTC
GCCGCCCTACCGCAGTCGACGAGGAACGAAGCCGAGCACAACAGTCAACA
ATCGGAACCAAAACACGCACCCCGACTTGTACCACCTCACCGGAGTCGGT
TCACCACATGGGTAACACAACAAGCACCGGGCATTACGTTGTCGTTGTCC
GCCTGGCTGGACAGGGATGGCGTCGATACGACGACGACAAAAATCACCGA
ATTCGACCAGAAACGTGTGCTGACCAAGGACGCCTTGATCCTTTCGTACA
GTCGCCGACCAGGC
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