mRNA_Ecto-sp8_S_contig11700.2040.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig11700.2040.1 vs. uniprot
Match: D7FVY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY3_ECTSI) HSP 1 Score: 286 bits (731), Expect = 9.120e-79 Identity = 173/190 (91.05%), Postives = 174/190 (91.58%), Query Frame = 1
Query: 1 TLDVLLSSQLPTVLRLWLEVAPDGGPFLRPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAADRGETRDNRELIKQIVRRWSQLVFRTPRELPVSPFSPHNHASPMPRRPAAADTARYAGAXXXXXXXXXXXX---------WTTAVRSHRARSLGGEMLSASXXXXXXXXXALPRHGTFQGTRGTPP 543
TLDVLLSSQLPTVLRLWLEVAPDGGPFL PPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAAD GETRDNRELIKQIVRRWSQLVFRTPRELPVSPFSPHNHASP+PRRPAA DTARYAGAXXXXXXXXXXXX WTTAVRSHRARSLGGEML AS XXXXXX ALPRHGTFQGTRGTPP
Sbjct: 1296 TLDVLLSSQLPTVLRLWLEVAPDGGPFLPPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAADPGETRDNRELIKQIVRRWSQLVFRTPRELPVSPFSPHNHASPIPRRPAAVDTARYAGAXXXXXXXXXXXXXXXXXXXXXWTTAVRSHRARSLGGEMLWASSXXXXXXA-ALPRHGTFQGTRGTPP 1484
BLAST of mRNA_Ecto-sp8_S_contig11700.2040.1 vs. uniprot
Match: A0A6H5L6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K9_9PHAE) HSP 1 Score: 270 bits (691), Expect = 1.530e-73 Identity = 149/179 (83.24%), Postives = 152/179 (84.92%), Query Frame = 1
Query: 22 SQLPTVLRLWLEVAPDGGPFLRPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAADRGETRDNRELIKQI-VRRWSQLVFRTPRELPVSPFSPHNHASPMPRRPAAADTARYAGAXXXXXXXXXXXXWTTAVRSHRARSLGGEMLSASXXXXXXXXXALPRHGTFQGTRGTPPPMGK 555
SQLPTVLRLWLEVAPDGGPFL PPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAA GETRDNRELIKQ +RRWSQLVF+TPRELPVSPFSPHNHASPMPRRPAA +AR AG WTTAVR HRARSLGGEMLSAS XXXXXALPRHGTFQGTRGTPPP GK
Sbjct: 1307 SQLPTVLRLWLEVAPDGGPFLPPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAAGPGETRDNRELIKQARIRRWSQLVFKTPRELPVSPFSPHNHASPMPRRPAAVGSARAAGGAGAGAG------WTTAVRCHRARSLGGEMLSASLSSPXXXXXALPRHGTFQGTRGTPPPRGK 1479
BLAST of mRNA_Ecto-sp8_S_contig11700.2040.1 vs. uniprot
Match: A0A098VQT2_9MICR (TFIIS N-terminal domain-containing protein n=1 Tax=Mitosporidium daphniae TaxID=1485682 RepID=A0A098VQT2_9MICR) HSP 1 Score: 68.6 bits (166), Expect = 6.770e-9 Identity = 34/88 (38.64%), Postives = 58/88 (65.91%), Query Frame = 1
Query: 4 LDVLLSSQLPTVLRLWLEVAPDGG-PFLRPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAADRGETRDNRELIKQIVRRWSQLVF 264
+D LL +++ +RLWLE PDG P + R S+L +L LP++K HL+ESG+GK+V+ + ETR+N++L +++ +WS+ +
Sbjct: 138 IDYLLDNRILDAIRLWLEPYPDGSLPSID--VRKSILHILAQLPIEKIHLKESGLGKVVMYLYKSPDETRENKKLAYKLIDKWSRPII 223
BLAST of mRNA_Ecto-sp8_S_contig11700.2040.1 vs. uniprot
Match: UPI00200945FE (LOW QUALITY PROTEIN: protein IWS1 homolog 1-like n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI00200945FE) HSP 1 Score: 61.6 bits (148), Expect = 2.190e-6 Identity = 31/84 (36.90%), Postives = 56/84 (66.67%), Query Frame = 1
Query: 34 TVLRLWLEVAPDGG-PFLRPPQRASLLKVLMVLPV------QKSHLRESGIGKLVVAMAADRGETRDNRELIKQIVRRWSQLVF 264
T+L+ WLE PDG P + RA++L++L +P+ ++ L++SGIGK+++ ++ ET DNR+L +++V +WS+L+F
Sbjct: 147 TLLKNWLEPLPDGSLPNIN--IRAAVLRILFDIPINLDQFGRREQLKKSGIGKVIMFLSKSDEETTDNRKLARELVHKWSRLIF 228
BLAST of mRNA_Ecto-sp8_S_contig11700.2040.1 vs. uniprot
Match: A0A1Y1WJ92_9FUNG (TFIIS N-terminal domain-containing protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WJ92_9FUNG) HSP 1 Score: 61.2 bits (147), Expect = 2.860e-6 Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 7 DVLLSSQLPTVLRLWLEVAPDGGPFLRPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAADRGETRDNRELIKQIVRRWSQLVFR 267
+ L + + LRLWLE DG Q A LL +L LP+++ HLRESGIGK+++ M+ NR + +Q V+RWS++V +
Sbjct: 176 EAFLENNIVDSLRLWLEPLDDGSLPALDIQNA-LLDILGKLPIRRDHLRESGIGKIIMFMSKCPRIPERNRRVCEQFVQRWSRMVMK 261
BLAST of mRNA_Ecto-sp8_S_contig11700.2040.1 vs. uniprot
Match: A0A1J5WHU7_9MICR (Transcription factor IWS1 n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WHU7_9MICR) HSP 1 Score: 55.8 bits (133), Expect = 2.070e-5 Identity = 28/90 (31.11%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 1 TLDVLLSSQLPTVLRLWLEVAPDGGPFLRPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAADR-GETRDNRELIKQIVRRWSQLVFR 267
T ++ L + + +R+WLE F P R +LL++L +P+Q HLRESG+GK+V+ + + G+ + ++ K+++++W Q +F+
Sbjct: 74 TQEIFLDANILEEIRIWLEPLGVCLTFPCPELRDTLLRLLFSMPIQVDHLRESGVGKIVMFYSRTKTGQFSETKKHAKRLMKKWIQEMFQ 163
BLAST of mRNA_Ecto-sp8_S_contig11700.2040.1 vs. uniprot
Match: R0MPD6_NOSB1 (Transcription factor IWS1 n=3 Tax=Opisthokonta TaxID=33154 RepID=R0MPD6_NOSB1) HSP 1 Score: 55.1 bits (131), Expect = 2.100e-5 Identity = 33/86 (38.37%), Postives = 52/86 (60.47%), Query Frame = 1
Query: 7 DVLLSSQLPTVLRLWLEVAPDGG-PFLRPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAADRGETRDNRELIKQIVRRWSQLV 261
D+LL + V+R+WLE PD P + R LL+VL V+ V K+HL ESGIGK+V + + E + + L +I+++W++ V
Sbjct: 50 DILLDDNILGVVRMWLEPLPDKTLPNIN--IRKRLLEVLKVINVDKNHLLESGIGKIVHFYSLNPKENVEIKRLALEIIQKWTRRV 133
BLAST of mRNA_Ecto-sp8_S_contig11700.2040.1 vs. uniprot
Match: A0A662WYV3_9STRA (TFIIS N-terminal domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WYV3_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 2.930e-5 Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 28 LPTVLRLWLEVAPDGGPFLRPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAADRGETRDNRELIKQIVRRWSQLVF 264
L +++ W++ DG R +L ++ +PV K HL+ SG+GK+V+ + ETR+N+EL + +V RWS+ VF
Sbjct: 256 LTQIVKKWIQPMEDGS-LPNVGVRTKMLDMISKMPVFKEHLKRSGLGKVVMILMKHPEETRENKELCRNLVERWSRSVF 333
BLAST of mRNA_Ecto-sp8_S_contig11700.2040.1 vs. uniprot
Match: A0A2G5BER5_COERN (TFIIS N-terminal domain-containing protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BER5_COERN) HSP 1 Score: 57.4 bits (137), Expect = 3.640e-5 Identity = 31/87 (35.63%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 7 DVLLSSQLPTVLRLWLEVAPDGGPFLRPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAADRGETRDNRELIKQIVRRWSQLVFR 267
+ L + + +RLWLE DG Q A +L L LP+++ HLRESGIGK+++ M+ + NR +Q +++WS++V R
Sbjct: 132 EAFLDNNIVDSIRLWLEPLDDGSLPSLDIQNA-MLNALRNLPIRRDHLRESGIGKIILFMSKCPRISEANRRTCEQFLQQWSRMVLR 217
BLAST of mRNA_Ecto-sp8_S_contig11700.2040.1 vs. uniprot
Match: A0A2D4BW91_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW91_PYTIN) HSP 1 Score: 58.2 bits (139), Expect = 5.880e-5 Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query: 16 LSSQLPTVLRLWLEVAPDGG-PFLRPPQRASLLKVLMVLPVQKSHLRESGIGKLVVAMAADRGETRDNRELIKQIVRRWSQLVF 264
L L + ++ W++ DG P L R LL ++ LPV K HL+ SG GK+V+ + ETR+N+EL + ++ RWS+ VF
Sbjct: 785 LDFDLLSFIKKWIQPLDDGTLPNLG--VRTKLLHMVARLPVMKEHLKRSGFGKVVMMLWKHPEETRENKELCRDLIERWSRAVF 866 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11700.2040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig11700.2040.1 >prot_Ecto-sp8_S_contig11700.2040.1 ID=prot_Ecto-sp8_S_contig11700.2040.1|Name=mRNA_Ecto-sp8_S_contig11700.2040.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=421bp MVLPVQKSHLRESGIGKLVVAMAADRGETRDNRELIKQIVRRWSQLVFRTback to top mRNA from alignment at Ecto-sp8_S_contig11700:3446..6388- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig11700.2040.1 ID=mRNA_Ecto-sp8_S_contig11700.2040.1|Name=mRNA_Ecto-sp8_S_contig11700.2040.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2943bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11700:3446..6388- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11700:3446..6388- >mRNA_Ecto-sp8_S_contig11700.2040.1 ID=mRNA_Ecto-sp8_S_contig11700.2040.1|Name=mRNA_Ecto-sp8_S_contig11700.2040.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1263bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11700:3446..6388- (Ectocarpus species8 EcLAC_412)back to top |