mRNA_Ecto-sp8_S_contig11606.1955.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11606.1955.1
Unique NamemRNA_Ecto-sp8_S_contig11606.1955.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11606.1955.1 vs. uniprot
Match: D7G3G3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G3_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 1.150e-49
Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 MEPGGTAGPRRVGTGGARRERTATNTPRLRKSNC-FRSKGEVKRGRDNDGRLADGEGKRDSARPNA*GGAGGGSRGWRAIMRTWCPIVDG 267
            MEPGGTAGPRRVGTGG RRERTATNTPRLRKSN  FRSKGEV+R RDNDGRLADGEGKRDSARPNA GGAGGGSRGWRAIMRTWCPIVDG
Sbjct:    1 MEPGGTAGPRRVGTGGTRRERTATNTPRLRKSNRRFRSKGEVERRRDNDGRLADGEGKRDSARPNAEGGAGGGSRGWRAIMRTWCPIVDG 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11606.1955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3G3_ECTSI1.150e-4993.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11606contigEcto-sp8_S_contig11606:22..362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size267
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_004470.1
Cds size198
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143228.797781-UTR-Ecto-sp8_S_contig11606:21..901681143228.797781-UTR-Ecto-sp8_S_contig11606:21..90Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11606 22..90 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143228.807917-CDS-Ecto-sp8_S_contig11606:90..1921681143228.807917-CDS-Ecto-sp8_S_contig11606:90..192Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11606 91..192 -
1681143228.8173895-CDS-Ecto-sp8_S_contig11606:266..3621681143228.8173895-CDS-Ecto-sp8_S_contig11606:266..362Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11606 267..362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11606.1955.1prot_Ecto-sp8_S_contig11606.1955.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11606 91..362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11606.1955.1

>prot_Ecto-sp8_S_contig11606.1955.1 ID=prot_Ecto-sp8_S_contig11606.1955.1|Name=mRNA_Ecto-sp8_S_contig11606.1955.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=66bp
MEPGGTAGPRRVGTGGARRERTATNTPRLRKSNCFRSKGEVKRGRDNDGR
LADGEGKRDSARPNA*
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mRNA from alignment at Ecto-sp8_S_contig11606:22..362-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11606.1955.1 ID=mRNA_Ecto-sp8_S_contig11606.1955.1|Name=mRNA_Ecto-sp8_S_contig11606.1955.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=341bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11606:22..362- (Ectocarpus species8 EcLAC_412)
ATGGAGCCTGGAGGCACGGCGGGGCCGCGCCGGGTTGGCACCGGCGGCGC
TCGGAGAGAGAGGACTGCGACCAACACGCCGAGGCTTCGAAAATCGGTAG
GGAGTGGACAGAGGGTTTTACGTGTGTTACGTTCTGTCTTGATTTTTTTT
CATCTCGATCTGCAACTAAGAACTGTTTTCGGAGCAAGGGAGAGGTGAAA
AGAGGGAGAGACAATGATGGGAGGCTAGCGGACGGGGAGGGGAAGAGGGA
TTCTGCTCGCCCAAACGCCTAAGGCGGGGCTGGTGGTGGATCGCGTGGGT
GGCGGGCAATCATGCGAACCTGGTGTCCCATCGTTGACGGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11606:22..362-

>mRNA_Ecto-sp8_S_contig11606.1955.1 ID=mRNA_Ecto-sp8_S_contig11606.1955.1|Name=mRNA_Ecto-sp8_S_contig11606.1955.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11606:22..362- (Ectocarpus species8 EcLAC_412)
ATGGAGCCTGGAGGCACGGCGGGGCCGCGCCGGGTTGGCACCGGCGGCGC
TCGGAGAGAGAGGACTGCGACCAACACGCCGAGGCTTCGAAAATCGAACT
GTTTTCGGAGCAAGGGAGAGGTGAAAAGAGGGAGAGACAATGATGGGAGG
CTAGCGGACGGGGAGGGGAAGAGGGATTCTGCTCGCCCAAACGCCTAA
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