mRNA_Ecto-sp8_S_contig11602.1952.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11602.1952.1
Unique NamemRNA_Ecto-sp8_S_contig11602.1952.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig11602.1952.1 vs. uniprot
Match: D7FXZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ1_ECTSI)

HSP 1 Score: 406 bits (1044), Expect = 1.650e-140
Identity = 212/288 (73.61%), Postives = 238/288 (82.64%), Query Frame = 2
Query:    5 VDMHQHLP-YGMARLACSSFYEGKWAGADKAYEHAVGQEFARALLVALWPEQYKSAEWREWEEEHDFLGILEGDLSEATTTREKDELTFGMYTKLNESAEFRKEVEEYAASAHEKKEVESDDLDVENPSPRVSAFAMLWSFPLLYEWACHAVFFAVIHQQLVESVFSKYDTCTKLHDSREIDIVRLGQFRSAQSRRIRRLHASNHEIRVAGNKAIAEARALRXXXXXXXXXXXXXXXRSHDVTQFLKAANDKAKFGPEWQVRSVIEDVVSESESESGLSDELSGEDDD 865
            +D H   P     +++    YEGKWAGADKA EHAVG+EFARALLVALWPE+ +SAEWREW+EEHD LGILEGDLSEATT  EKD+LTFGMYT+LNESAEFRKEVE YAASAHEKKEV SDDLDV+NP PRVSAF M+W+FPLLYEWA HA+F AVIH+QLV SVFSKYDTCT+ HDSREIDIVRLGQFRSAQSRRIR+LHASNHEIR AGNKAIAEARALR               R HDVTQF++ A +KAK+GP WQVRSV++  +SESESES +S ELSGE+DD
Sbjct:    1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFPLLYEWARHAIFLAVIHEQLVGSVFSKYDTCTQQHDSREIDIVRLGQFRSAQSRRIRKLHASNHEIREAGNKAIAEARALRKAASEAVPNERQQRKRGHDVTQFVRTATNKAKYGPGWQVRSVLD--MSESESESDVSAELSGEEDD 286          
BLAST of mRNA_Ecto-sp8_S_contig11602.1952.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE)

HSP 1 Score: 346 bits (887), Expect = 5.700e-117
Identity = 172/256 (67.19%), Postives = 203/256 (79.30%), Query Frame = 2
Query:    2 WVDMHQHLPYGMARLACSSFYEGKWAGADKAYEHAVGQEFARALLVALWPEQYKSAEWREWEEEHDFLGILEGDLSEATTTREKDELTFGMYTKLNESAEFRKEVEEYAASAHEKKEVESDDLDVENPSPRVSAFAMLWSFPLLYEWACHAVFFAVIHQQLVESVFSKYDTCTKLHDSREIDIVRLGQFRSAQSRRIRRLHASNHEIRVAGNKAIAEARALRXXXXXXXXXXXXXXXRSHDVTQFLKAANDKAKFG 769
            W+DMHQHLPY MARLACSSF+EGKWAG++KA+EHAVGQE+ARA L+ALWPE Y+ AEW  W+EEH++L IL  DLSEA TT EKDELTFGM++KLN SAEFR EVE YA SA EKKE+  DD D EN +PRVS F M+WSFPLLYEWACHA+ FA IHQQLVES FS +DTCT+ HDSREIDIVRLGQFRS+ SRR++RL+A+N EIR AG+KAIA AR L+               R+HD  QFL+  ++K+K G
Sbjct:    8 WMDMHQHLPYSMARLACSSFFEGKWAGSEKAFEHAVGQEYARASLLALWPELYEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYALSAREKKEIVVDD-DAENQAPRVSGFDMIWSFPLLYEWACHAILFAPIHQQLVESDFSTFDTCTQKHDSREIDIVRLGQFRSSHSRRVQRLYATNKEIRQAGDKAIAVARELKKSAAHAIPNERQLRKRTHDTKQFLRDQSEKSKHG 262          
BLAST of mRNA_Ecto-sp8_S_contig11602.1952.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE)

HSP 1 Score: 342 bits (877), Expect = 6.770e-109
Identity = 175/274 (63.87%), Postives = 209/274 (76.28%), Query Frame = 2
Query:    2 WVDMHQHLPYGMARLACSSFYEGKWAGADKAYEHAVGQEFARALLVALWPEQYKSAEWREWEEEHDFLGILEGDLSEATTTREKDELTFGMYTKLNESAEFRKEVEEYAASAHEKKEVESDDLDVENPSPRVSAFAMLWSFPLLYEWACHAVFFAVIHQQLVESVFSKYDTCTKLHDSREIDIVRLGQFRSAQSRRIRRLHASNHEIRVAGNKAIAEARALRXXXXXXXXXXXXXXXRSHDVTQFLKAANDKAKFGPEWQVRSVIEDVVSESES 823
            W+DMHQHLPY MARLACSSF+EGKWAG++KA EHAVGQE+ARA L+ALWPE  + AEW  W+EEH++L IL  DLSEA TT EKDELTFGM++KLN SAEFR EVE Y+ SA EKKE+  DD D E+ +PRVS F M+WSFPLLYEWA HA+ FA IHQQLV+SV S YDTCT+ HDSREI IVRLGQFRS+QSRR++RLHA+N EIR AG+K IA AR L+               R  D  QFL+  ++K+K G  W VRSV+++ +S  ES
Sbjct:  504 WMDMHQHLPYSMARLACSSFFEGKWAGSEKAIEHAVGQEYARASLLALWPELNEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYSLSAREKKEIVVDD-DAESQAPRVSGFDMIWSFPLLYEWARHAILFAPIHQQLVKSVCSTYDTCTQKHDSREIGIVRLGQFRSSQSRRVQRLHATNKEIREAGDKVIAVARELKKSAAQAIPNDWQLRKRVLDTKQFLRDQSEKSKHGSNWVVRSVLKEEMSSEES 776          
BLAST of mRNA_Ecto-sp8_S_contig11602.1952.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 2.320e-90
Identity = 155/273 (56.78%), Postives = 193/273 (70.70%), Query Frame = 2
Query:   35 MARLACSSFYEGKWAGADKAYEHAVGQEFARALLVALWPEQYKSAEWREWEEEHDFLGILEGDLSEATTTREKDELTFGMYTKLNESAEFRKEVEEYAASAHEKKEVESDDLDVENPSPRVSAFAMLWSFPLLYEWACHAVFFAVIHQQLVESVFSKYDTCTKLHDSREIDIVRLGQFRSAQSRRIRRLHASNHEIRVAGNKAIAEARALRXXXXXXXXXXXXXXXRSHDVTQFLKAANDKAKFGPEWQVRSVIEDVVSESE-SESGLSDELS 850
            M RLACSSFYEGKWAG+++ +EHAVGQE ARALL+A WP +Y+S EW+ WEE++ F                +++LT GM++KL  SAEFR+E+E YAASAHEKK+V SD +DVEN +PRVS F M+W+FP LYEWACHAVFFA IHQQLVES  S YDT T+ HDSRE+DIVRLGQF S  SRR+ RL +SN EIR  G+KAIA A  L+                 HD  +FLK  ++K+K G +W V+SV+E+V+S SE SES  S+ LS
Sbjct:  165 MTRLACSSFYEGKWAGSEEGFEHAVGQEVARALLLAFWPNRYESTEWKGWEEQNTFR---------------ENKLTLGMFSKLAASAEFREELERYAASAHEKKKVVSD-VDVENQTPRVSGFDMIWTFPQLYEWACHAVFFAPIHQQLVESSSSTYDTGTQKHDSRELDIVRLGQFSSRGSRRVERLDSSNQEIRDEGDKAIAVATVLKKSASHAVPNERQLRNGEHDWRKFLKDKSEKSKHGSKWVVKSVMEEVLSSSEESESEASENLS 421          
BLAST of mRNA_Ecto-sp8_S_contig11602.1952.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 5.630e-41
Identity = 90/223 (40.36%), Postives = 128/223 (57.40%), Query Frame = 2
Query:    2 WVDMHQHLPYGMARLACSSFYEGKWAGADKAYEHAVGQEFARALLVALWPEQYKSAEWREWEEEHDFLGILEGDLSEATTTREKDELTFGMYTKLNESAEFRKEVEEYAASAHEKKEVESDDLDVENPSPR-VSAFAMLWSFPLLYEWACHAVFFAVIHQQLVESVFSKYDTCTKLHDSREIDIVRLGQFRSAQSRRIRRLHASNHEIRVAGNKAIAEARALR 667
            W++ HQ LP  MAR+ C SF+       + A E AVG EFARA L   W   Y+       E E ++   L  DL   T  R KDELTFG++++++     R E+E+YA S          D +V+  +P+  SA A L+ FPLLY+  CH  +F  IHQQL+E+ FSK+D+C +  D  E+DIVR+G ++SA+SR I    A+  +IR AG K + +AR  +
Sbjct:  233 WMERHQQLPLSMARIGCPSFFARTGIMGEGAVEQAVGPEFARAFLHVAWSALYEGEP--RTEREREYRTQLVKDLGGTTDARRKDELTFGLFSRIDSDRSVRNELEQYANSGW-------GDKEVDQGAPKGTSALARLFDFPLLYKLVCHRFYFVPIHQQLIEAFFSKFDSCAQKTDMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAK 446          
BLAST of mRNA_Ecto-sp8_S_contig11602.1952.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 3.480e-37
Identity = 89/217 (41.01%), Postives = 118/217 (54.38%), Query Frame = 2
Query:    5 VDMHQHLPYGMARLACSSFYEGKWAGADKAYEHAVGQEFARALLVALWPEQYKSAEWREWEEEHDFLGILEGDLSEATTTREKDELTFGMYTKLNESAEFRKEVEEYAASAHEKKEVESDDLDVENPSPRVSAFAMLWSFPLLYEWACHAVFFAVIHQQLVESVFSKYDTCTKLHDSREIDIVRLGQFRSAQSRRIRRLHASNHEIRVAGNKAIAEA 655
            +  HQ LP  MAR+ C SFY         A E AVG EFARA     WP  Y+       E E  +   L  DL   T  R KDELT G+++ ++     R E+E+YA S    KE++      E+     SA A L+  PLLY   CH  +F  IHQQL+E+ FSKYD+C K  D  E+D+VR+G ++SA+SR I  + A + +IR AG K + EA
Sbjct:  235 MQRHQELPLSMARIGCPSFYARTGIMGGGAVEQAVGPEFARAFPHVAWPGLYEGEP--RTERERQYRTQLAKDLGGTTEARRKDELTLGLFSCIDGDLSVRSELEQYANSGWGDKEID------ESAPKGTSALARLFDLPLLYRLVCHRFYFVPIHQQLIEAFFSKYDSCAKKTDMAEMDVVRVGGWKSAESRDIVCVDAIDDQIRGAGKKVLKEA 443          
BLAST of mRNA_Ecto-sp8_S_contig11602.1952.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 5.700e-32
Identity = 80/197 (40.61%), Postives = 105/197 (53.30%), Query Frame = 2
Query:    2 WVDMHQHLPYGMARLACSSFYEGKWAGADKAYEHAVGQEFARALLVALWPEQYKSAEWREWEEEH------DFLGILEGDLSEATTTREKDELTFGMYTKLNESAEFRKEVEEYAASAHEKKEVESDDLDVENPSPRVSAFAMLWSFPLLYEWACHAVFFAVIHQQLVESVFSKYDTCTKLHDSREIDIVRLGQFRS 574
            W+  HQ LP  MAR+ C SFY         A E AVG E+ARA L   WPE+Y+     E E E+      DF G+++         R KDELTFG+++ + E AE R EVE YA S    KEV     D E      +   +   FP LY++ C   +F  IHQQL+E+ FSKYDTC K  D   +D VR+G +++
Sbjct:  184 WMQRHQELPLSMARIGCPSFYARMGIMGKGAVEQAVGPEYARAFLHVGWPERYEGEPRSEREREYRVQLGEDFGGVIDA--------RRKDELTFGLFSIVEEDAEMRCEVEGYAESGFGDKEV-----DEEAEKGTTALVRLFEKFPRLYKFVCVRFYFVPIHQQLIEAFFSKYDTCAKKTDVAVMDSVRVGSWQT 367          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11602.1952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FXZ1_ECTSI1.650e-14073.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSZ3_9PHAE5.700e-11767.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU73_9PHAE6.770e-10963.87Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN38_9PHAE2.320e-9056.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIQ1_ECTSI5.630e-4140.36Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5JI13_9PHAE3.480e-3741.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR45_9PHAE5.700e-3240.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11602contigEcto-sp8_S_contig11602:4435..5329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size895
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_004200.1
Cds size885
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143228.5585666-UTR-Ecto-sp8_S_contig11602:4434..44441681143228.5585666-UTR-Ecto-sp8_S_contig11602:4434..4444Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11602 4435..4444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143228.5717576-CDS-Ecto-sp8_S_contig11602:4444..53291681143228.5717576-CDS-Ecto-sp8_S_contig11602:4444..5329Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11602 4445..5329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11602.1952.1prot_Ecto-sp8_S_contig11602.1952.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11602 4445..5329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11602.1952.1

>prot_Ecto-sp8_S_contig11602.1952.1 ID=prot_Ecto-sp8_S_contig11602.1952.1|Name=mRNA_Ecto-sp8_S_contig11602.1952.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=295bp
MHQHLPYGMARLACSSFYEGKWAGADKAYEHAVGQEFARALLVALWPEQY
KSAEWREWEEEHDFLGILEGDLSEATTTREKDELTFGMYTKLNESAEFRK
EVEEYAASAHEKKEVESDDLDVENPSPRVSAFAMLWSFPLLYEWACHAVF
FAVIHQQLVESVFSKYDTCTKLHDSREIDIVRLGQFRSAQSRRIRRLHAS
NHEIRVAGNKAIAEARALRKAASKAVPSERQLRKRSHDVTQFLKAANDKA
KFGPEWQVRSVIEDVVSESESESGLSDELSGEDDDEMLRIIRDG*
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mRNA from alignment at Ecto-sp8_S_contig11602:4435..5329+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11602.1952.1 ID=mRNA_Ecto-sp8_S_contig11602.1952.1|Name=mRNA_Ecto-sp8_S_contig11602.1952.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=895bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11602:4435..5329+ (Ectocarpus species8 EcLAC_412)
ATGGGTCGACATGCACCAGCACCTGCCCTACGGCATGGCTAGGCTAGCTT GCAGTTCATTCTACGAGGGCAAGTGGGCGGGGGCGGACAAGGCGTACGAA CATGCTGTAGGGCAGGAGTTCGCCCGGGCACTGCTGGTGGCGCTGTGGCC TGAGCAATACAAAAGTGCTGAATGGAGGGAGTGGGAAGAGGAGCATGATT TTCTCGGAATTTTGGAGGGGGACCTCTCCGAGGCAACGACAACAAGAGAG AAAGATGAGCTGACGTTTGGCATGTACACGAAGTTGAACGAGAGTGCTGA GTTCAGAAAAGAGGTCGAGGAGTACGCCGCATCTGCGCACGAGAAGAAAG AGGTTGAAAGCGACGACCTAGATGTTGAAAATCCATCGCCGCGTGTCTCA GCCTTTGCCATGCTTTGGAGCTTCCCTCTTTTGTACGAATGGGCTTGCCA TGCGGTATTTTTTGCCGTAATTCATCAACAGCTTGTGGAGAGCGTGTTTT CAAAGTACGACACTTGCACGAAGCTGCACGACTCGAGGGAGATTGACATC GTTCGCCTAGGCCAGTTCCGGTCAGCCCAGTCTAGGAGAATACGGCGGTT GCATGCGTCCAATCATGAGATTCGGGTGGCAGGAAACAAAGCAATCGCTG AAGCGAGAGCGTTGCGGAAAGCTGCATCAAAAGCAGTTCCGAGCGAGAGA CAGCTGCGAAAACGCTCGCACGATGTAACCCAGTTCTTGAAGGCTGCAAA TGACAAGGCTAAGTTTGGCCCCGAGTGGCAGGTTAGGAGCGTGATCGAGG ATGTTGTGTCGGAGTCGGAGTCTGAGAGTGGTCTGTCCGACGAGCTGAGC GGGGAGGATGACGATGAGATGTTACGAATAATCCGCGATGGATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11602:4435..5329+

>mRNA_Ecto-sp8_S_contig11602.1952.1 ID=mRNA_Ecto-sp8_S_contig11602.1952.1|Name=mRNA_Ecto-sp8_S_contig11602.1952.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11602:4435..5329+ (Ectocarpus species8 EcLAC_412)
ATGCACCAGCACCTGCCCTACGGCATGGCTAGGCTAGCTTGCAGTTCATT
CTACGAGGGCAAGTGGGCGGGGGCGGACAAGGCGTACGAACATGCTGTAG
GGCAGGAGTTCGCCCGGGCACTGCTGGTGGCGCTGTGGCCTGAGCAATAC
AAAAGTGCTGAATGGAGGGAGTGGGAAGAGGAGCATGATTTTCTCGGAAT
TTTGGAGGGGGACCTCTCCGAGGCAACGACAACAAGAGAGAAAGATGAGC
TGACGTTTGGCATGTACACGAAGTTGAACGAGAGTGCTGAGTTCAGAAAA
GAGGTCGAGGAGTACGCCGCATCTGCGCACGAGAAGAAAGAGGTTGAAAG
CGACGACCTAGATGTTGAAAATCCATCGCCGCGTGTCTCAGCCTTTGCCA
TGCTTTGGAGCTTCCCTCTTTTGTACGAATGGGCTTGCCATGCGGTATTT
TTTGCCGTAATTCATCAACAGCTTGTGGAGAGCGTGTTTTCAAAGTACGA
CACTTGCACGAAGCTGCACGACTCGAGGGAGATTGACATCGTTCGCCTAG
GCCAGTTCCGGTCAGCCCAGTCTAGGAGAATACGGCGGTTGCATGCGTCC
AATCATGAGATTCGGGTGGCAGGAAACAAAGCAATCGCTGAAGCGAGAGC
GTTGCGGAAAGCTGCATCAAAAGCAGTTCCGAGCGAGAGACAGCTGCGAA
AACGCTCGCACGATGTAACCCAGTTCTTGAAGGCTGCAAATGACAAGGCT
AAGTTTGGCCCCGAGTGGCAGGTTAGGAGCGTGATCGAGGATGTTGTGTC
GGAGTCGGAGTCTGAGAGTGGTCTGTCCGACGAGCTGAGCGGGGAGGATG
ACGATGAGATGTTACGAATAATCCGCGATGGATGA
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