mRNA_Ecto-sp8_S_contig1159.1938.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig1159.1938.1 vs. uniprot
Match: D7FL35_ECTSI (Similar to Rho GTPase activating protein 24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL35_ECTSI) HSP 1 Score: 251 bits (642), Expect = 9.520e-74 Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 3
Query: 3 QLLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPFEVLRDLRFQIETVRWMVDCCDQLFDD 371
QLLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPF VLRDLRFQIETVRWMVDCCDQLFDD
Sbjct: 1200 QLLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPFAVLRDLRFQIETVRWMVDCCDQLFDD 1322
BLAST of mRNA_Ecto-sp8_S_contig1159.1938.1 vs. uniprot
Match: A0A6H5JEV0_9PHAE (Rho-GAP domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV0_9PHAE) HSP 1 Score: 234 bits (596), Expect = 1.540e-67 Identity = 116/122 (95.08%), Postives = 117/122 (95.90%), Query Frame = 3
Query: 3 QLLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPFEVLRDLRFQIETVRWMVDCCDQLFD 368
QLLKAFFRELPEPLVPFS KVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLR+VAMHSSTNRMTSENLAIVWAPNLLRPQDD PF VLRDLRFQIETVRWMVDCCDQLFD
Sbjct: 1149 QLLKAFFRELPEPLVPFS---KVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLRKVAMHSSTNRMTSENLAIVWAPNLLRPQDDHPFAVLRDLRFQIETVRWMVDCCDQLFD 1267
BLAST of mRNA_Ecto-sp8_S_contig1159.1938.1 vs. uniprot
Match: A0A835Z007_9STRA (Rho-GAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z007_9STRA) HSP 1 Score: 146 bits (369), Expect = 5.320e-37 Identity = 70/123 (56.91%), Postives = 91/123 (73.98%), Query Frame = 3
Query: 3 QLLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPFEVLRDLRFQIETVRWMVDCCDQLFDD 371
QLLKA+FRELPEP++P++ Y +VIAIA+AAG +WV AMK+ILW +P A Y LR LF FLR VA S+ N MT+ NLAIVWAPNL+RP D +PF LRDL+F +T W+++ + +F D
Sbjct: 1150 QLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTVKWVTAMKTILWKVPSAVYATLRGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFVTLRDLQFGTDTTAWLIERVNDVFTD 1272
BLAST of mRNA_Ecto-sp8_S_contig1159.1938.1 vs. uniprot
Match: A0A7R9UHX6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UHX6_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 2.830e-21 Identity = 52/126 (41.27%), Postives = 80/126 (63.49%), Query Frame = 3
Query: 3 QLLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADA---RWVQAMKSILWGIPIANYNCLRFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPFEVLRDLRFQIETVRWMVDCCDQLFDD 371
+LLKAF RELPEPL+PF+ Y +++ + G D +WV +++I++ + +Y LR+LF FL A + N MT+ENLAIV+APN+LR +DD + LRD+ + TV M++ ++F D
Sbjct: 155 RLLKAFLRELPEPLIPFNKYVPLLSATRKYGRDDEGLPQWVHVVRTIVYTMNSTHYEVLRYLFMFLVRAAKEEA-NLMTAENLAIVFAPNILRSRDDSLYAELRDMGLGLTTVLLMIENASEVFKD 279
BLAST of mRNA_Ecto-sp8_S_contig1159.1938.1 vs. uniprot
Match: A0A553QQX2_9TELE (Rho-GAP domain-containing protein (Fragment) n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553QQX2_9TELE) HSP 1 Score: 97.1 bits (240), Expect = 1.110e-20 Identity = 44/110 (40.00%), Postives = 72/110 (65.45%), Query Frame = 3
Query: 6 LLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPFEVLRDLRFQIETVR 335
LLK + RELPEPLVPFS Y + + K + +Q ++ +L +P+AN+N L+++ +FL +V +S+ N+M+ +NLA V+ PN+LRP+ +DP ++ LR +E R
Sbjct: 139 LLKLYLRELPEPLVPFSRYEEFLGCGKRIASEREKGLQELRILLHELPVANFNLLKYICQFLNDVQSYSNVNKMSIQNLATVFGPNILRPKAEDPESIIGGLRSTLEQQR 248
BLAST of mRNA_Ecto-sp8_S_contig1159.1938.1 vs. uniprot
Match: A0A5A9PH16_9TELE (Rho GTPase-activating protein 24 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PH16_9TELE) HSP 1 Score: 98.2 bits (243), Expect = 3.490e-20 Identity = 43/102 (42.16%), Postives = 73/102 (71.57%), Query Frame = 3
Query: 6 LLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPFEVLRDL 311
LLK + RELPEPLVP+S Y +++ AK + +Q +KS+L+ +P+AN+N L+++ +FL +V +S+ N+M+ +NLA V+ PN+LRP+ +DP ++ +L
Sbjct: 213 LLKLYLRELPEPLVPYSRYEEILVCAKKIPSDREQGLQELKSLLYELPVANFNLLKYICQFLNDVQSYSNINKMSIQNLATVFGPNILRPKAEDPESIIGEL 314
BLAST of mRNA_Ecto-sp8_S_contig1159.1938.1 vs. uniprot
Match: A0A3B3QBD8_9TELE (Rho GTPase-activating protein 24-like n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QBD8_9TELE) HSP 1 Score: 97.4 bits (241), Expect = 5.820e-20 Identity = 51/141 (36.17%), Postives = 83/141 (58.87%), Query Frame = 3
Query: 6 LLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPFEVLRDLRFQIETVRWMVDCCDQLFDD*RLMDEADVAGHLYSLALP 428
LLK + RELPEP+VPFS Y + + K + + ++ +K +L +P+AN++ L ++ FL EV HS N+M+++NLA V+ PN+LRP+ DDP ++ + + ++ CD LF + +A+ AGH LP
Sbjct: 119 LLKLYLRELPEPVVPFSRYQEFLQCGKRVHLERRQTLEDLKKLLHELPVANFSLLHYVCRFLFEVQSHSHINKMSTQNLATVFGPNILRPKADDPESIIEGAALVQQLMSELIQECDGLF-----LKDAE-AGHGPGSLLP 253
BLAST of mRNA_Ecto-sp8_S_contig1159.1938.1 vs. uniprot
Match: A0A673LMI9_9TELE (Rho GTPase-activating protein 24-like n=14 Tax=Cyprinidae TaxID=7953 RepID=A0A673LMI9_9TELE) HSP 1 Score: 95.1 bits (235), Expect = 3.910e-19 Identity = 42/99 (42.42%), Postives = 69/99 (69.70%), Query Frame = 3
Query: 6 LLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPFEVL 302
LLK + RELPEPLVPFS Y + + K + +Q ++S+L+ +P+AN+N L+++ +FL +V +SS N+M+ +NLA V+ PN+LRP+ +DP ++
Sbjct: 114 LLKLYLRELPEPLVPFSRYEEFLVCGKRIPSDREKGLQDLRSLLYELPVANFNLLKYICQFLHDVQSYSSANKMSIQNLATVFGPNILRPKAEDPESII 212
BLAST of mRNA_Ecto-sp8_S_contig1159.1938.1 vs. uniprot
Match: A0A3B3ILE5_ORYLA (Rho GTPase activating protein 24 n=23 Tax=Oryzias TaxID=8089 RepID=A0A3B3ILE5_ORYLA) HSP 1 Score: 95.1 bits (235), Expect = 4.200e-19 Identity = 45/120 (37.50%), Postives = 74/120 (61.67%), Query Frame = 3
Query: 6 LLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPFEVLRDLRFQIETVRWMVDCCDQLF 365
LLK + RELPEP++PF Y + +A +K G D V+ +K+++ G+P NYN L+++ FL EV +S N+M+ +NLA V+ PN++RP+ +DP ++ + + M+ D LF
Sbjct: 248 LLKLYLRELPEPVIPFHKYEEFLACSKLIGKDDEMGVKQLKTLVEGLPPVNYNLLKYISRFLDEVQSYSGVNKMSVQNLATVFGPNIMRPKIEDPVTIMEGTVLVQQLMAVMIGRHDVLF 367
BLAST of mRNA_Ecto-sp8_S_contig1159.1938.1 vs. uniprot
Match: A0A3N0YP58_ANAGA (Rho GTPase-activating protein 24 n=2 Tax=Xenocypridinae TaxID=2743747 RepID=A0A3N0YP58_ANAGA) HSP 1 Score: 94.7 bits (234), Expect = 5.280e-19 Identity = 42/99 (42.42%), Postives = 69/99 (69.70%), Query Frame = 3
Query: 6 LLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPFEVL 302
LLK + RELPEPLVPFS Y + + K + +Q +KS+L+ +P+AN+N L+++ +FL +V +S+ N+M+ +NLA V+ PN+LRP+ +DP ++
Sbjct: 110 LLKLYLRELPEPLVPFSRYEEFLICGKRIPSNREKGLQDLKSLLYELPVANFNLLKYICQFLNDVQSYSNVNKMSIQNLATVFGPNILRPKAEDPESII 208 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1159.1938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig1159.1938.1 >prot_Ecto-sp8_S_contig1159.1938.1 ID=prot_Ecto-sp8_S_contig1159.1938.1|Name=mRNA_Ecto-sp8_S_contig1159.1938.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=84bp MKSILWGIPIANYNCLRFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRback to top mRNA from alignment at Ecto-sp8_S_contig1159:6295..9121+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig1159.1938.1 ID=mRNA_Ecto-sp8_S_contig1159.1938.1|Name=mRNA_Ecto-sp8_S_contig1159.1938.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2827bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1159:6295..9121+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1159:6295..9121+ >mRNA_Ecto-sp8_S_contig1159.1938.1 ID=mRNA_Ecto-sp8_S_contig1159.1938.1|Name=mRNA_Ecto-sp8_S_contig1159.1938.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1159:6295..9121+ (Ectocarpus species8 EcLAC_412)back to top |