mRNA_Ecto-sp8_S_contig11582.1932.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11582.1932.1
Unique NamemRNA_Ecto-sp8_S_contig11582.1932.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11582.1932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11582contigEcto-sp8_S_contig11582:2730..3208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size479
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143226.861082-UTR-Ecto-sp8_S_contig11582:2729..27571681143226.861082-UTR-Ecto-sp8_S_contig11582:2729..2757Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11582 2730..2757 +
1681143226.8791883-UTR-Ecto-sp8_S_contig11582:3111..32081681143226.8791883-UTR-Ecto-sp8_S_contig11582:3111..3208Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11582 3112..3208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143226.8703241-CDS-Ecto-sp8_S_contig11582:2757..31111681143226.8703241-CDS-Ecto-sp8_S_contig11582:2757..3111Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11582 2758..3111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11582.1932.1prot_Ecto-sp8_S_contig11582.1932.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11582 2758..3111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11582.1932.1

>prot_Ecto-sp8_S_contig11582.1932.1 ID=prot_Ecto-sp8_S_contig11582.1932.1|Name=mRNA_Ecto-sp8_S_contig11582.1932.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=118bp
MFVPPPPPRAPQSMSPFFHSGGVWKLYHTYRVDSVTAVVDMCAGRPSRAN
HSWHLKQRRNGGLPFFVGRGGCCNVVRRGREAGGGGIRAKLVTASEHKCV
EKCSVGVGCYTCFQHTN*
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mRNA from alignment at Ecto-sp8_S_contig11582:2730..3208+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11582.1932.1 ID=mRNA_Ecto-sp8_S_contig11582.1932.1|Name=mRNA_Ecto-sp8_S_contig11582.1932.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=479bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11582:2730..3208+ (Ectocarpus species8 EcLAC_412)
TGTCCCTTGTTTTATACCATATAACTGCATGTTTGTGCCCCCCCCCCCGC
CCCGCGCCCCGCAGTCGATGTCCCCCTTTTTTCACTCAGGGGGCGTATGG
AAGCTGTATCATACTTATCGCGTGGATAGTGTGACTGCTGTAGTTGACAT
GTGTGCCGGCCGACCAAGCCGTGCGAATCATTCGTGGCATTTGAAGCAAC
GAAGAAACGGAGGCCTCCCTTTTTTTGTCGGAAGGGGAGGATGTTGTAAT
GTAGTCCGGCGTGGTCGGGAAGCGGGTGGTGGGGGAATAAGAGCTAAGCT
TGTGACCGCGAGCGAACATAAATGCGTCGAGAAGTGCAGCGTGGGCGTGG
GTTGCTATACTTGTTTTCAGCACACGAATTAGAGACCCTGCGATAGAGGG
GAGGGTGGCAACAGTGGTGACCGCAAGACTGTGTGGAGATTAGCTAGCGG
AGATTTTACGGCGGTGGAATAGTGTCCGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11582:2730..3208+

>mRNA_Ecto-sp8_S_contig11582.1932.1 ID=mRNA_Ecto-sp8_S_contig11582.1932.1|Name=mRNA_Ecto-sp8_S_contig11582.1932.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11582:2730..3208+ (Ectocarpus species8 EcLAC_412)
ATGTTTGTGCCCCCCCCCCCGCCCCGCGCCCCGCAGTCGATGTCCCCCTT
TTTTCACTCAGGGGGCGTATGGAAGCTGTATCATACTTATCGCGTGGATA
GTGTGACTGCTGTAGTTGACATGTGTGCCGGCCGACCAAGCCGTGCGAAT
CATTCGTGGCATTTGAAGCAACGAAGAAACGGAGGCCTCCCTTTTTTTGT
CGGAAGGGGAGGATGTTGTAATGTAGTCCGGCGTGGTCGGGAAGCGGGTG
GTGGGGGAATAAGAGCTAAGCTTGTGACCGCGAGCGAACATAAATGCGTC
GAGAAGTGCAGCGTGGGCGTGGGTTGCTATACTTGTTTTCAGCACACGAA
TTAG
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