mRNA_Ecto-sp8_S_contig11561.1917.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11561.1917.1
Unique NamemRNA_Ecto-sp8_S_contig11561.1917.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig11561.1917.1 vs. uniprot
Match: D7G2M9_ECTSI (Indole-3-glycerol-phosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M9_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.120e-38
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 1
Query:    1 EVEKALEHGASVIMVNNWDRITGKLYPKQAMAVRHLIPDQVLTIASGGIDSGEQAGRLTDEGYDAVVLGRSL 216
            EVEKALEHGASVIMVNNWDRITGKLYPKQA AVRHLIPDQVLTIASGGIDS EQAGRLTDEGYDAVVLGRSL
Sbjct:  276 EVEKALEHGASVIMVNNWDRITGKLYPKQAKAVRHLIPDQVLTIASGGIDSVEQAGRLTDEGYDAVVLGRSL 347          
BLAST of mRNA_Ecto-sp8_S_contig11561.1917.1 vs. uniprot
Match: A0A7S2BZD9_9STRA (Indole-3-glycerol-phosphate synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BZD9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.510e-20
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 EVEKALEHGASVIMVNNWDRITGKLYPKQAMAVRHLIPDQVLTIASGGIDSGEQAGRLTDEGYDAVVLGRSL 216
            E   A++ GAS+IMVNNWDR TG  +P QA+AVR  IPD ++TIA+GG+ S +QA RL D GYD V LGR+L
Sbjct:  244 EARNAVDLGASIIMVNNWDRATGTWHPDQALAVRGQIPDHIVTIATGGLASSDQARRLADVGYDCVALGRAL 315          
BLAST of mRNA_Ecto-sp8_S_contig11561.1917.1 vs. uniprot
Match: A0A7S2XXG0_9STRA (Indole-3-glycerol-phosphate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXG0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.490e-20
Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 EVEKALEHGASVIMVNNWDRITGKLYPKQAMAVRHLIPDQVLTIASGGIDSGEQAGRLTDEGYDAVVLGRSL 216
            E+E AL  G S+I VNNWDR+TGKLYP QA+ +   +P +++T+A+GGI + EQ   L+D GYD V+LGR+L
Sbjct:   50 ELEHALSLGVSMICVNNWDRVTGKLYPDQALNLCSALPKEIITLATGGIKTKEQCFELSDAGYDGVILGRAL 121          
BLAST of mRNA_Ecto-sp8_S_contig11561.1917.1 vs. uniprot
Match: A0A7S2RG86_9STRA (Indole-3-glycerol-phosphate synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RG86_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.870e-18
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 EVEKALEHGASVIMVNNWDRITGKLYPKQAMAVRHLIPDQVLTIASGGIDSGEQAGRLTDEGYDAVVLGRSL 216
            E + ALE GA ++MVNNWDR  GK +  QA  VR +IPD V+TIA+GGI S E+A RL   GYD V LGR+L
Sbjct:  265 ECDYALELGAMILMVNNWDRTDGKWHRNQAECVREVIPDNVVTIAAGGISSSEEATRLAAIGYDCVCLGRAL 336          
BLAST of mRNA_Ecto-sp8_S_contig11561.1917.1 vs. uniprot
Match: A0A7S4DLC8_HETAK (Indole-3-glycerol-phosphate synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DLC8_HETAK)

HSP 1 Score: 80.5 bits (197), Expect = 1.150e-16
Identity = 38/72 (52.78%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 EVEKALEHGASVIMVNNWDRITGKLYPKQAMAVRHLIPDQVLTIASGGIDSGEQAGRLTDEGYDAVVLGRSL 216
            E++ ALE GA++IMVNNWDR+ GKL+  QA+ +   IP  +++IA+GGI + +Q   L D GYD VVLGR+L
Sbjct:  147 ELDYALEIGANMIMVNNWDRLEGKLHRNQALGLMQKIPPPIISIAAGGIMTPDQCFALQDAGYDGVVLGRAL 218          
BLAST of mRNA_Ecto-sp8_S_contig11561.1917.1 vs. uniprot
Match: A0A0G4F0L6_VITBC (Indole-3-glycerol-phosphate synthase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F0L6_VITBC)

HSP 1 Score: 70.5 bits (171), Expect = 1.210e-12
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 EVEKALEHGASVIMVNNWDRITGKLYPKQAMAVRHLIPDQVLTIASGGIDSGEQAGRLTDEGYDAVVLGRSL 216
            E + A++ GA++IMVN WDR+ G+L P QA  +R  I  +V+TI +GGI   +Q   +   GYD+VVLGR L
Sbjct:  221 EADDAVKQGANIIMVNQWDRVDGRLSPLQAGKLRDRIHPEVITIVAGGIQDYKQISDIGMLGYDSVVLGRKL 292          
BLAST of mRNA_Ecto-sp8_S_contig11561.1917.1 vs. uniprot
Match: B9QQH7_TOXGV (Indole-3-glycerol-phosphate synthase n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=B9QQH7_TOXGV)

HSP 1 Score: 70.9 bits (172), Expect = 1.230e-12
Identity = 32/72 (44.44%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 EVEKALEHGASVIMVNNWDRITGKLYPKQAMAVRHLIPDQVLTIASGGIDSGEQAGRLTDEGYDAVVLGRSL 216
            E ++A + GA++++VN WDR TG+L P+QA+ VR +   +V+ +ASGG+ S  QA +    G+D VVLG++L
Sbjct:  438 EAQQAEDAGATLLVVNQWDRYTGRLVPEQALRVRSVCSPEVIVLASGGLTSLAQAAKCAKCGFDGVVLGQAL 509          
BLAST of mRNA_Ecto-sp8_S_contig11561.1917.1 vs. uniprot
Match: F0VLC8_NEOCL (Indole-3-glycerol-phosphate synthase n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VLC8_NEOCL)

HSP 1 Score: 70.5 bits (171), Expect = 1.680e-12
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 EVEKALEHGASVIMVNNWDRITGKLYPKQAMAVRHLIPDQVLTIASGGIDSGEQAGRLTDEGYDAVVLGRSL 216
            E ++A + GA++++VN WDR TG+L P+ A+ VR +   +V+ +ASGG+ S  QA +    G+D VVLG++L
Sbjct:  435 EAQQAEDAGATLLVVNQWDRYTGRLIPEHALRVRSVCSPEVIVLASGGLTSTAQATKCAKSGFDGVVLGQAL 506          
BLAST of mRNA_Ecto-sp8_S_contig11561.1917.1 vs. uniprot
Match: A0A2A9MM83_9APIC (Indole-3-glycerol-phosphate synthase n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MM83_9APIC)

HSP 1 Score: 70.1 bits (170), Expect = 2.290e-12
Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 EVEKALEHGASVIMVNNWDRITGKLYPKQAMAVRHLIPDQVLTIASGGIDSGEQAGRLTDEGYDAVVLGRSL 216
            E ++A + GA++++VN WDR TG+L+P+ A+ VR     +V+ +A+GG+ S E+A +    G+D VVLG++L
Sbjct:  422 EAQQAEDAGATLLVVNQWDRYTGRLFPEHALRVRSACSPEVVVLAAGGLFSTEEATKCAKSGFDGVVLGQAL 493          
BLAST of mRNA_Ecto-sp8_S_contig11561.1917.1 vs. uniprot
Match: L0AVS7_THEEQ (Indole-3-glycerol-phosphate synthase n=1 Tax=Theileria equi strain WA TaxID=1537102 RepID=L0AVS7_THEEQ)

HSP 1 Score: 65.9 bits (159), Expect = 6.930e-11
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 EVEKALEHGASVIMVNNWDRITGKLYPKQAMAVRHLIPDQVLTIASGGIDSGEQAGRLTDEGYDAVVLGRSL 216
            E  +A + GA +++VN WDR+   L P +A+ ++ +IP+ V TIA GGI + +QA  L   GYDAV  GR L
Sbjct:  265 EALRATDIGARILLVNQWDRVKNILKPTRALDIKDVIPEDVTTIACGGIMTIKQAHELALAGYDAVCFGRRL 336          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11561.1917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2M9_ECTSI1.120e-3897.22Indole-3-glycerol-phosphate synthase n=1 Tax=Ectoc... [more]
A0A7S2BZD9_9STRA1.510e-2059.72Indole-3-glycerol-phosphate synthase n=1 Tax=Dicty... [more]
A0A7S2XXG0_9STRA5.490e-2054.17Indole-3-glycerol-phosphate synthase n=1 Tax=Fibro... [more]
A0A7S2RG86_9STRA6.870e-1858.33Indole-3-glycerol-phosphate synthase n=1 Tax=Rhizo... [more]
A0A7S4DLC8_HETAK1.150e-1652.78Indole-3-glycerol-phosphate synthase n=1 Tax=Heter... [more]
A0A0G4F0L6_VITBC1.210e-1247.22Indole-3-glycerol-phosphate synthase n=1 Tax=Vitre... [more]
B9QQH7_TOXGV1.230e-1244.44Indole-3-glycerol-phosphate synthase n=15 Tax=Toxo... [more]
F0VLC8_NEOCL1.680e-1243.06Indole-3-glycerol-phosphate synthase n=1 Tax=Neosp... [more]
A0A2A9MM83_9APIC2.290e-1241.67Indole-3-glycerol-phosphate synthase n=1 Tax=Besno... [more]
L0AVS7_THEEQ6.930e-1144.44Indole-3-glycerol-phosphate synthase n=1 Tax=Theil... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11561contigEcto-sp8_S_contig11561:5144..5945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeApicomplexa
Stop0
Start0
Seed ortholog score71.2
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog99158.XP_008888818.1
Model size216
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Indole-3-glycerol phosphate synthase
EggNOG OGs3YBM4@5794,3YN4S@5796,3YSPB@5809,COG0134@1,KOG4201@2759
Cds size216
COG Functional cat.E
Best tax levelSarcocystidae
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143225.878037-CDS-Ecto-sp8_S_contig11561:5143..52391681143225.878037-CDS-Ecto-sp8_S_contig11561:5143..5239Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11561 5144..5239 -
1681143225.8936262-CDS-Ecto-sp8_S_contig11561:5825..59451681143225.8936262-CDS-Ecto-sp8_S_contig11561:5825..5945Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11561 5826..5945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11561.1917.1prot_Ecto-sp8_S_contig11561.1917.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11561 5144..5945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11561.1917.1

>prot_Ecto-sp8_S_contig11561.1917.1 ID=prot_Ecto-sp8_S_contig11561.1917.1|Name=mRNA_Ecto-sp8_S_contig11561.1917.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=72bp
EVEKALEHGASVIMVNNWDRITGKLYPKQAMAVRHLIPDQVLTIASGGID
SGEQAGRLTDEGYDAVVLGRSL
back to top

mRNA from alignment at Ecto-sp8_S_contig11561:5144..5945-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11561.1917.1 ID=mRNA_Ecto-sp8_S_contig11561.1917.1|Name=mRNA_Ecto-sp8_S_contig11561.1917.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=802bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11561:5144..5945- (Ectocarpus species8 EcLAC_412)
GAGGTGGAAAAGGCCCTCGAGCACGGCGCGAGCGTCATCATGGTCAACAA CTGGGACCGCATCACGGGCAAGCTGTACCCCAAGCAGGCGATGGCCGTCC GCCACTTGATACCGGACCAGGTGAGAATTTGCGCATCACACGTTAGATCA AATGTAGCCGGGGTTGTTGTGCTGCTGCCGTGGCGCGGGCAGAGAGCTGT CACCGTACCAAAGAGCGGGGACTACCGGCGCAGGCCTCGCGTGTCTTCGC TACAACAGGAGAGATTGCTTTGGTGGTTTCGGTGGTCGACGCATCGGTTT TTTGGAGTTTTTTTGGCGCGTTCGGGATCCTTTCGCTCACGTTGTCGGTA CTCGAAGCTTTCGCCGGTAAGTACACGTTTCTCAGCTGGCCTCTTCTTTC TTGCTCTTGTGGCAGTCATGCACCCCTCTCCCACTTCCCCGCTGCCCTTG CGGCGAACACGTACTTAGTGCCAAGCGTGGCGGACGAGGGCAGCGAGCGC TCTCAGCGCCAATCTGTTCGAAAGAAGCGGACGATGCGGTTCGTAATACA ACCCGGTGCGGCCTTTTTTTGTCGATGAAATTGGTTGTTGGGTTCAAAAA AAAAAAAAAAAAACTGAGGCGGAAGAGCGCGCGCCCCCCCCCCCCCTACC CGCTACCGCTGCTCTCCTTTCGCCTGTGCTTCTTGTTCTTCCCGCACACC ATGCAGGTTCTGACAATCGCATCGGGAGGTATCGACAGCGGGGAGCAGGC GGGGAGGCTAACCGACGAAGGTTACGATGCTGTCGTTCTGGGCAGGAGCT TG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11561:5144..5945-

>mRNA_Ecto-sp8_S_contig11561.1917.1 ID=mRNA_Ecto-sp8_S_contig11561.1917.1|Name=mRNA_Ecto-sp8_S_contig11561.1917.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11561:5144..5945- (Ectocarpus species8 EcLAC_412)
GAGGTGGAAAAGGCCCTCGAGCACGGCGCGAGCGTCATCATGGTCAACAA
CTGGGACCGCATCACGGGCAAGCTGTACCCCAAGCAGGCGATGGCCGTCC
GCCACTTGATACCGGACCAGGTTCTGACAATCGCATCGGGAGGTATCGAC
AGCGGGGAGCAGGCGGGGAGGCTAACCGACGAAGGTTACGATGCTGTCGT
TCTGGGCAGGAGCTTG
back to top