mRNA_Ecto-sp8_S_contig11542.1903.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11542.1903.1
Unique NamemRNA_Ecto-sp8_S_contig11542.1903.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig11542.1903.1 vs. uniprot
Match: D8LJK3_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK3_ECTSI)

HSP 1 Score: 741 bits (1913), Expect = 4.880e-268
Identity = 360/373 (96.51%), Postives = 366/373 (98.12%), Query Frame = 1
Query:    1 MDAIFLALAGVLLTASPTADAAEAAPALDLSPSVGYQCWETHGVFERDCFHDETLTLDPYPLTPEMFARAIRYNTSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEVTNASVPKYGVMQFLHKLLDKALPMDLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLESPWQSENMAEVHASVTQKHDIPMVSFRDAVWPHKEDYAVAQDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPLPNPSPSERELQRFKGGMGCLANPRSSVLELGNYLDGPPPEELVSVTGWSVLKLSGEAGLTGFRKDA 1119
            MDA+FLALAGVLLTASPTADAAEAAPALDLS SVGYQCWETHGVFE DCFHDETLTLDPYPL PEMFARAIRY+TSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEVTNASVPKYGVMQFLHKLLDKALP+DLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLESPWQSENMAEVHASVTQKHDIPMVSFRDAVWP KEDYA A+DIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPLPNPSPSE+ELQRFKGGMGCLANPRSSVLELG+YLD PPPEELVSVTGWSVLKLSGEAGLTGFRK A
Sbjct:    1 MDAVFLALAGVLLTASPTADAAEAAPALDLSSSVGYQCWETHGVFECDCFHDETLTLDPYPLKPEMFARAIRYSTSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEVTNASVPKYGVMQFLHKLLDKALPVDLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLESPWQSENMAEVHASVTQKHDIPMVSFRDAVWPKKEDYAAAEDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPLPNPSPSEKELQRFKGGMGCLANPRSSVLELGSYLDAPPPEELVSVTGWSVLKLSGEAGLTGFRKYA 373          
BLAST of mRNA_Ecto-sp8_S_contig11542.1903.1 vs. uniprot
Match: A0A6H5JTT5_9PHAE (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT5_9PHAE)

HSP 1 Score: 655 bits (1691), Expect = 7.470e-234
Identity = 322/373 (86.33%), Postives = 343/373 (91.96%), Query Frame = 1
Query:    1 MDAIFLALAGVLLTASPTADAAEAAPALDLSPSVGYQCWETHGVFERDCFHDETLTLDPYPLTPEMFARAIRYNTSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEVTNASVPKYGVMQFLHKLLDKALPMDLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLESPWQSENMAEVHASVTQKHDIPMVSFRDAVWPHKEDYAVAQDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPLPNPSPSERELQRFKGGMGCLANPRSSVLELGNYLDGPPPEELVSVTGWSVLKLSGEAGLTGFRKDA 1119
            MDAIFLALAGVLLTAS TADAAEAAPALDLS S+ YQCWETHGVFERDCFHDETLTLDPYPLTPEMF RAIRY+TSDL+LHRAFRRARGRGVLKVVVLGGSVT+GH+CSSPAGL+G  CAWPHRVEQWFQEE EDLDIEVTNAS+P +GVMQFL K LDK LP+DLEVDLIIVDFGVNDAVIE FEYNLE+L+MAHELLIRY+R TMFHSPALLYAESFIAP R+L+ PWQSENMAE HASVT+KHDIPMVSFRDAVWP KEDYA A+ IWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGP  NPSPSERELQRFK GMGCLANPRS++L+L  YLD PPPEELVSV+G SV   SG+AG TGFRKDA
Sbjct:   29 MDAIFLALAGVLLTASSTADAAEAAPALDLSSSLRYQCWETHGVFERDCFHDETLTLDPYPLTPEMFPRAIRYSTSDLTLHRAFRRARGRGVLKVVVLGGSVTFGHECSSPAGLEGIACAWPHRVEQWFQEENEDLDIEVTNASIPGFGVMQFLLKRLDKTLPVDLEVDLIIVDFGVNDAVIELFEYNLEHLKMAHELLIRYIRYTMFHSPALLYAESFIAPSRTLQVPWQSENMAEAHASVTRKHDIPMVSFRDAVWPQKEDYAAAEVIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPSSNPSPSERELQRFKSGMGCLANPRSAILQLDKYLDAPPPEELVSVSGSSV---SGDAGPTGFRKDA 398          
BLAST of mRNA_Ecto-sp8_S_contig11542.1903.1 vs. uniprot
Match: A0A6H5JFN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN1_9PHAE)

HSP 1 Score: 444 bits (1141), Expect = 6.140e-153
Identity = 214/223 (95.96%), Postives = 218/223 (97.76%), Query Frame = 1
Query:  451 MQFLHKLLDKALPMDLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLESPWQSENMAEVHASVTQKHDIPMVSFRDAVWPHKEDYAVAQDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPLPNPSPSERELQRFKGGMGCLANPRSSVLELGNYLDGPPPEELVSVTGWSVLKLSGEAGLTGFRKDA 1119
            MQFLHKLLDKALP+DLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLE+PWQSENMAEVHASVTQKHDIPMVSFRDAVWPHKEDYA A+DIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGP PNPSPSERELQRFKGGMGCLANPRSS+LELGNYLD P PEELVSVTGWSVLKLSGEAGLTGFRK A
Sbjct:    1 MQFLHKLLDKALPVDLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLEAPWQSENMAEVHASVTQKHDIPMVSFRDAVWPHKEDYAAAEDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPSPNPSPSERELQRFKGGMGCLANPRSSILELGNYLDAPTPEELVSVTGWSVLKLSGEAGLTGFRKGA 223          
BLAST of mRNA_Ecto-sp8_S_contig11542.1903.1 vs. uniprot
Match: D7FNS9_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS9_ECTSI)

HSP 1 Score: 291 bits (745), Expect = 2.120e-92
Identity = 152/290 (52.41%), Postives = 188/290 (64.83%), Query Frame = 1
Query:  271 GVLKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEVTNASVPKYGVMQFLHKLLDKALPMDLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLESPWQSENMAEVHASVTQKHDIPMVSFRDAVWPHKEDYAVAQDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYG-----------PLPNPSPSERELQRFKGGMGCLANPRSSVLELGNYLDGPPPEELVSVTGWSVLKLSGEAGLTGF 1107
            GVLKVV +GGSVT+G +C SP GL  N CAWPHR+EQWFQE+  D ++EV N +VP  G++ FLHK +  ALP+DL+VDL+IVDFGVNDA+++ F+  L+ ++MAHE  I ++R+ M   PALLYAES+I+P           NMAEVHA+VTQKHDIPMV                               QLMADVV YY+Q S+ARFLE  G           PLPNPS  EREL+RFK G+GCL +  +  LELG YL  PPP ELVS  GWS+L+L+G  GLTGF
Sbjct:    4 GVLKVVAIGGSVTFGRNCESPNGLTFNACAWPHRLEQWFQEKVGDFEVEVVNEAVPGEGMIDFLHKTIKSALPVDLKVDLVIVDFGVNDAILDHFD--LDDVKMAHETFIGHIRNAMTSKPALLYAESYISPHLVAIHWAPGRNMAEVHANVTQKHDIPMVQ------------------------------QLMADVVVYYMQKSHARFLEANGEIACGDEVVKDPLPNPSVDERELERFKNGLGCLESTNAFELELGGYLGTPPPSELVSTNGWSILQLAGAPGLTGF 261          
BLAST of mRNA_Ecto-sp8_S_contig11542.1903.1 vs. uniprot
Match: A0A6H5JFM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM8_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 1.130e-90
Identity = 134/140 (95.71%), Postives = 135/140 (96.43%), Query Frame = 1
Query:    1 MDAIFLALAGVLLTASPTADAAEAAPALDLSPSVGYQCWETHGVFERDCFHDETLTLDPYPLTPEMFARAIRYNTSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEV 420
            MDAIFLALAGVLLTASPTADAAEAAP LDLS SVGYQCWETHGVFERDCFHDETLTLDPYPLTPEMF RAIRY+TSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSP GLKGN CAWPHRVEQWFQEEYEDLDIEV
Sbjct:   56 MDAIFLALAGVLLTASPTADAAEAAPTLDLSSSVGYQCWETHGVFERDCFHDETLTLDPYPLTPEMFPRAIRYSTSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPTGLKGNDCAWPHRVEQWFQEEYEDLDIEV 195          
BLAST of mRNA_Ecto-sp8_S_contig11542.1903.1 vs. uniprot
Match: D7FNS8_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS8_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 3.460e-86
Identity = 130/228 (57.02%), Postives = 161/228 (70.61%), Query Frame = 1
Query:   70 AAPALDLSPSVGYQCWETHGVFERDCFHDETLTLDPYPLTPEMFARAIRYNTSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEVTNASVPKYGVMQFLHKLLDKALPMDLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLESPWQSENMAEVHASVTQKHDIPMV 753
            A P +D++ S    CWETHG +E DCFHDE L    YPLT EM  R + YNTS + LHRAF  A+  GVLKVV +GGSVT+G  C SP GL  N CAWPHR++QWF+ E  D  +EV N +VP  G++ FLHK +   L +D+EVDL+IVDFGVNDA+++ F+  LE ++MAHE  I +VR+ M   PALLYAESFIAP  +   P Q  NMAEVHA+VTQK+DIPMV
Sbjct:  111 AIPDIDVASSTDVLCWETHGEYELDCFHDEPLVWKQYPLTQEMLQRTVPYNTSGIHLHRAFNTAKANGVLKVVAIGGSVTFGRSCESPKGLANNACAWPHRLDQWFRAEVGDFKVEVVNEAVPGEGMIDFLHKTIKNVLSVDVEVDLVIVDFGVNDAILDHFD--LEDVKMAHETFISHVRNAMTSKPALLYAESFIAPRLASLHPPQGSNMAEVHANVTQKYDIPMV 336          
BLAST of mRNA_Ecto-sp8_S_contig11542.1903.1 vs. uniprot
Match: A0A7X7N917_9BACT (SGNH/GDSL hydrolase family protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X7N917_9BACT)

HSP 1 Score: 78.6 bits (192), Expect = 2.100e-12
Identity = 62/246 (25.20%), Postives = 108/246 (43.90%), Query Frame = 1
Query:  196 MFARAIRYNTSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEVTNASVPKYGVMQFLHKLLDKALPMDLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLESPWQSENMAEVHASVTQKHDIPMVSFRDAVWPHKEDYAVA-QDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPLPNP 930
            +F RA+        L   F++A     + VVV+GGS+T G               W  ++  W++  +    +   NA +   G +  +H+L D  L    + DL+ ++F VND        + +     +E ++R +       PA++                   N+   HA V + ++IPM+S+RDA++P  +   +A  DI   S+HP+   H   A +V  +L+LS+  F  V G +P P
Sbjct:   30 IFQRAVANQGDPARLQHVFQKAAQGKPITVVVIGGSITQGAHAQKVE------YQWGSQMHNWWKTTFPKSTVSYHNAGIGATGSLIGVHRLSDHVLKH--KPDLVAIEFSVNDG-------DSQLTSETYEGIVRQILSQP-QQPAIVLLNMMSQ---------SGGNVQHRHAPVAKHYNIPMISYRDALFPEIKAKNIAWSDISPDSIHPNHIGHTYAAALVNLFLKLSFDEFTRV-GSVPKP 249          
BLAST of mRNA_Ecto-sp8_S_contig11542.1903.1 vs. uniprot
Match: A0A0A1PTY2_9BACT (SGNH_hydro domain-containing protein n=1 Tax=bacterium YEK0313 TaxID=1522316 RepID=A0A0A1PTY2_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 1.620e-11
Identity = 78/265 (29.43%), Postives = 111/265 (41.89%), Query Frame = 1
Query:  160 TLTLDPYPLTPEMFARAIRYNTSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEVTNASV----PKYGVMQFLHKLLDKALPMDLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLESPWQSE-NMAEVHASVTQKHDIPMVSFRDAVWPHKEDYAVAQ-DIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPLPNPSP 936
            T  L    L P+MFAR+         LHR F +AR    + + V+GGS+T G   S P        ++  RVE W++  +    I + NA +      YG ++    LL          DL+IV+F VND   E   Y         E L+R +   +   PA++           L   WQ   N  E  A +   + +PMVSFRDAVWP      +A+ ++    VHP+   H+  A        L  AR  E    +P  SP
Sbjct:   18 TAALAAPVLAPDMFARSEVALGDPARLHRIFAKARRGEPVTLGVIGGSITVGALASRPD------LSYAGRVETWWRRRFPATPIRLVNAGIGGTGSAYGALRAGEDLLAS------RPDLVIVEFAVNDGWNEGASY---------EGLLRQIL-ALPGMPAVV----------CLFMMWQGGGNSQESQARIGAHYRLPMVSFRDAVWPAMAGGRLAEAELLVDGVHPNDAGHEAAA--------LFLARLFERIDQMPVRSP 242          
BLAST of mRNA_Ecto-sp8_S_contig11542.1903.1 vs. uniprot
Match: A0A7X0RQQ8_9BACL (SGNH/GDSL hydrolase family protein n=1 Tax=Cohnella nanjingensis TaxID=1387779 RepID=A0A7X0RQQ8_9BACL)

HSP 1 Score: 73.6 bits (179), Expect = 1.110e-10
Identity = 65/257 (25.29%), Postives = 119/257 (46.30%), Query Frame = 1
Query:  196 MFARAIRYNTSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEVTNASVPKYGVMQFLHKLLDKALPMDLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLESPWQSENMAEVHASVTQKHDIPMVSFRDAVWPHKEDYAVA-QDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGP-------LPNPSPSE 942
            M  R+I     +  + +A R+AR +  + +  +GGS+T G   S+ A        +     QW+++++ D  IE+ NA +        +H++ D+ L +  + D +++D+ VND+       +   L   +E L+R +  +  + P +L    F+         W       VH ++   +D+PM+SF+DAVWP  +   +  + ++   VHP+   H+L A  +   L+  YA  L+  G        LP P  SE
Sbjct:   59 MSKRSIVNAGDEARIVKAMRKARRKEKVTIGFIGGSITEGAAASAEANR------YASLTFQWWKDKFPDTPIEMVNAGIGATDSYIGVHRV-DRDL-LQAKPDFVVIDYAVNDS-------DSPQLMNQYEGLVRKILQSD-NKPGVLLL--FMVHQDGTNLQW-------VHGAIGSYYDLPMISFKDAVWPQIKAGRIGWEQLFADEVHPNDAGHRLAAKFITDRLEKIYAD-LDKRGTADDAIVALPEPKTSE 289          
BLAST of mRNA_Ecto-sp8_S_contig11542.1903.1 vs. uniprot
Match: UPI00190CF0AA (SGNH/GDSL hydrolase family protein n=4 Tax=Bradyrhizobium TaxID=374 RepID=UPI00190CF0AA)

HSP 1 Score: 73.2 bits (178), Expect = 1.200e-10
Identity = 65/252 (25.79%), Postives = 112/252 (44.44%), Query Frame = 1
Query:  193 EMFARAIRYNTSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEVTNASVPKYGVMQFLHKLLDKALPMDLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLIRYVRDTMFHSPALLYAESFIAPFRSLESPWQSE-NMAEVHASVTQKHDIPMVSFRDAVWPHKEDYAVA-QDIWGHSVHPDWQVHQLMADVVAYYLQLSYARFLEVYGPL-PNPSPS 939
            EM AR++    +   L R F +A     + +  +GGS+T G   +           +  ++  W+ + + +  + V NA +   G +    ++    L  D   DL+IV+FGVNDA  + + Y         E L+R++ D      ALL           L   W+   NM  + A + + +D+PM+SFRDA+WP  E   +A +D+    VHP+   ++  A     + +    +    +G L P P P+
Sbjct:   19 EMVARSVVSPGNTTRLKRVFAKAARGEPVTLGFIGGSITQGPPQN-----------YASQIAAWWGQRFPNASLSVVNAGLAGTGSLLGAFRVGVDLLSKD--PDLVIVEFGVNDASADAYAY---------EGLLRHILDHRTAPAALL-----------LFMMWEKGGNMQSMQAPIGRHYDLPMISFRDALWPEIEAGRLAWRDVIVDVVHPNDLGNRYAASFCTNFFEKVLRQQAATHGALTPEPLPA 237          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11542.1903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LJK3_ECTSI4.880e-26896.51SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JTT5_9PHAE7.470e-23486.33SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JFN1_9PHAE6.140e-15395.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNS9_ECTSI2.120e-9252.41SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JFM8_9PHAE1.130e-9095.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNS8_ECTSI3.460e-8657.02SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A7X7N917_9BACT2.100e-1225.20SGNH/GDSL hydrolase family protein n=1 Tax=Lentisp... [more]
A0A0A1PTY2_9BACT1.620e-1129.43SGNH_hydro domain-containing protein n=1 Tax=bacte... [more]
A0A7X0RQQ8_9BACL1.110e-1025.29SGNH/GDSL hydrolase family protein n=1 Tax=Cohnell... [more]
UPI00190CF0AA1.200e-1025.79SGNH/GDSL hydrolase family protein n=4 Tax=Bradyrh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11542contigEcto-sp8_S_contig11542:3..2574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score86.7
Seed ortholog evalue2.6e-14
Seed eggNOG ortholog2903.EOD37448
Model size1119
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG OGs2B6NA@1,2S0MI@2759
Ec32 ortholog descriptionSGNH hydrolase-type esterase domain
Ec32 orthologEc-17_002330.1
Cds size1119
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143224.9376922-CDS-Ecto-sp8_S_contig11542:2..2151681143224.9376922-CDS-Ecto-sp8_S_contig11542:2..215Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11542 3..215 -
1681143224.9519541-CDS-Ecto-sp8_S_contig11542:494..6501681143224.9519541-CDS-Ecto-sp8_S_contig11542:494..650Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11542 495..650 -
1681143224.9622872-CDS-Ecto-sp8_S_contig11542:1181..14301681143224.9622872-CDS-Ecto-sp8_S_contig11542:1181..1430Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11542 1182..1430 -
1681143224.9692683-CDS-Ecto-sp8_S_contig11542:1733..18171681143224.9692683-CDS-Ecto-sp8_S_contig11542:1733..1817Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11542 1734..1817 -
1681143224.976671-CDS-Ecto-sp8_S_contig11542:2157..25741681143224.976671-CDS-Ecto-sp8_S_contig11542:2157..2574Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11542 2158..2574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11542.1903.1prot_Ecto-sp8_S_contig11542.1903.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11542 3..2574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11542.1903.1

>prot_Ecto-sp8_S_contig11542.1903.1 ID=prot_Ecto-sp8_S_contig11542.1903.1|Name=mRNA_Ecto-sp8_S_contig11542.1903.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=373bp
MDAIFLALAGVLLTASPTADAAEAAPALDLSPSVGYQCWETHGVFERDCF
HDETLTLDPYPLTPEMFARAIRYNTSDLSLHRAFRRARGRGVLKVVVLGG
SVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEVTNASVPKYGV
MQFLHKLLDKALPMDLEVDLIIVDFGVNDAVIEEFEYNLEYLRMAHELLI
RYVRDTMFHSPALLYAESFIAPFRSLESPWQSENMAEVHASVTQKHDIPM
VSFRDAVWPHKEDYAVAQDIWGHSVHPDWQVHQLMADVVAYYLQLSYARF
LEVYGPLPNPSPSERELQRFKGGMGCLANPRSSVLELGNYLDGPPPEELV
SVTGWSVLKLSGEAGLTGFRKDA
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mRNA from alignment at Ecto-sp8_S_contig11542:3..2574-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11542.1903.1 ID=mRNA_Ecto-sp8_S_contig11542.1903.1|Name=mRNA_Ecto-sp8_S_contig11542.1903.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2572bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11542:3..2574- (Ectocarpus species8 EcLAC_412)
ATGGATGCGATCTTCCTCGCGCTTGCTGGCGTTTTGCTGACGGCTTCGCC AACGGCAGACGCCGCAGAGGCGGCCCCTGCTTTGGACTTGTCTCCTAGCG TTGGGTATCAGTGCTGGGAAACCCACGGCGTTTTCGAGCGCGATTGCTTC CACGACGAGACGCTGACCCTGGACCCGTACCCCCTGACGCCGGAGATGTT CGCGCGGGCGATTCGGTACAATACGTCCGACCTCTCTTTGCACCGCGCCT TTCGCAGGGCGAGGGGTAGGGGGGTGCTGAAGGTCGTTGTTCTAGGGGGG AGTGTCACATACGGACACGATTGCTCATCACCGGCAGGGCTCAAGGGGAA CGGTTGTGCATGGCCCCATCGCGTGGAGCAGTGGTTTCAGGAAGAATACG AAGACCTGGATATCGAGGTACAGAGTACCTACATGTGAGAGTGGCTCGTC AATTGGGGTTGACAGGCACAGACGAATTACAAAGCTTGCCGAGACCACAG CCCAAGACACATTCTCATGAGCGTATTGTACCAAACTGATTGGCAGGTAC AGATTCATGGGCTACGGTTAGGAATATCATTATCCATTATCCCGACGTTG GCTACCATACTGATGCTTCCTGCTAAGTTGAAGCCAGTTGACCGTTTTTC GAGCGCATCTGGAAGTTGAAAAGAATGTTTTTTTCAGAATGCGAATCCAT CCTACGGCCGCCACTTTCTTCAATGAACACTCTTTTCAAACGCCAACATG CTGATAGGTCACAAACGCGAGTGTTCCCAAATATGGAGTAATGCAATTTC TCCATAAACTTCTGGACAAGGCCCTGCCAATGGACTTGGAGGTGAGAAAG GGGGAATCCGGTGGGGCATACAACTTGAGGGATATTCGTCTTGGCCTCGA AGAGGGGTTGATATTCTCGAGATGGAAAAAATGGGATGCTATCATACTGT ATACCACGAGCGATGATACATTCATATTGCTGTAGCATAGACGCGCAAAA TGCTACAGTGACAACTTGTAAATTATGTGAGGACTGCTGGGGTAGAAAAT CAATGATGGTCCATCAGTTTCAACTATGATGGGCACGCATATGCGCTACT TGCGCACCACCGTAACCCCCCGCATTGTTGCTCGGCGGATCCAGGTCGAC CTCATTATCGTCGACTTTGGAGTTAATGACGCGGTCATCGAAGAATTTGA GTACAACCTGGAGTACTTGAGGATGGCGCACGAACTACTCATCCGCTACG TCAGAGACACAATGTTCCACTCGCCAGCGCTCCTCTATGCCGAGAGTTTC ATCGCACCATTCCGAAGTCTTGAATCCCCATGGCAAAGCGAAAACATGGC GGAGGTGCACGCCAGCGTAACACAAAAGCACGACATTCCCATGGTGAGTT AGTCGTTGCAGTTGCGTGGCTTCTGCAAGCGCTTGGTTTCAAAATGTGGT GGGAGGGTTTCCGAACAGTTAAAGTTCTGGAGCGGTAGATGACGCTCGTA ATACACTCGCGACTCGCAGTACAGTATACTCGGAATCCTGGTTCGGTGTC GATTGCGGCAACGACGGTAGCACATACTTCAGTGTAGCTTTGATTCAACA ATAAGGCGACACTCGAAGGCCGCCCAAGAGCCATCAAATTAGGTCATGGC CGGGGACGGCAAGAAATTTCCGCCACGAAAGTTTGGCGTTGAGGACAAGA TTCGGAAACCGCTTAAAGAACCATTGCAGCGTCCGCAGCAGAGTGAGTTA TCTCCACTACATTCCCATGGCGGGGACATGACAGCTCATGAAGTTCTTGG CCCATCACAGTACGAGGGCGGCGATTCGCGAGGCAACGGGGAAGGGACCT TAGCGAGAGTACTTCACGATCTCGTCTCTCTTCGTACGACTGTCTCTTTG CACTCAACTCTTGGTCACACGAAGGTGTCCTTCCGGGATGCGGTTTGGCC GCACAAGGAAGATTACGCCGTTGCACAAGACATCTGGGGACACTCGGTCC ATCCTGATTGGCAAGTGCACCAGCTCATGGCCGATGTCGTCGCTTACTAC CTTCAACTATCGTACGCCCGGTTCTTGGAGGTGAGGGTTACACCGAAATA GACATGGACGGGTGTTCGGTGTTTCTGCGCTTAAGGTTCGGGAAATGTGC GCTCTGTATGCTTTTGACCTAAGAGCTAGTTCCGTGCTGCGTGACATCCT ACCAAGCCGTTTGGGGCACTCTCGGTGTCCCATAGCCTAGGATTCGATTG GCGATTGGAAGAAAGTGCTCACATCGCTCCAGCGCCGTGGCGAGCTTTGG TGCCAAATCCAAACCATTGTGCTGCCCCGCTTGTATCATCGACCGACTAA CGGAAACAGGTGTATGGCCCGTTACCGAACCCTAGTCCCAGCGAGAGGGA ACTCCAGCGATTTAAGGGTGGGATGGGCTGCCTCGCGAACCCTCGTTCAT CCGTTCTTGAGCTAGGCAATTACTTGGACGGCCCACCCCCGGAAGAGTTG GTGTCAGTTACAGGATGGTCGGTGTTGAAACTCTCCGGGGAAGCTGGACT GACAGGGTTCAGGAAAGATGCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11542:3..2574-

>mRNA_Ecto-sp8_S_contig11542.1903.1 ID=mRNA_Ecto-sp8_S_contig11542.1903.1|Name=mRNA_Ecto-sp8_S_contig11542.1903.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1119bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11542:3..2574- (Ectocarpus species8 EcLAC_412)
ATGGATGCGATCTTCCTCGCGCTTGCTGGCGTTTTGCTGACGGCTTCGCC
AACGGCAGACGCCGCAGAGGCGGCCCCTGCTTTGGACTTGTCTCCTAGCG
TTGGGTATCAGTGCTGGGAAACCCACGGCGTTTTCGAGCGCGATTGCTTC
CACGACGAGACGCTGACCCTGGACCCGTACCCCCTGACGCCGGAGATGTT
CGCGCGGGCGATTCGGTACAATACGTCCGACCTCTCTTTGCACCGCGCCT
TTCGCAGGGCGAGGGGTAGGGGGGTGCTGAAGGTCGTTGTTCTAGGGGGG
AGTGTCACATACGGACACGATTGCTCATCACCGGCAGGGCTCAAGGGGAA
CGGTTGTGCATGGCCCCATCGCGTGGAGCAGTGGTTTCAGGAAGAATACG
AAGACCTGGATATCGAGGTCACAAACGCGAGTGTTCCCAAATATGGAGTA
ATGCAATTTCTCCATAAACTTCTGGACAAGGCCCTGCCAATGGACTTGGA
GGTCGACCTCATTATCGTCGACTTTGGAGTTAATGACGCGGTCATCGAAG
AATTTGAGTACAACCTGGAGTACTTGAGGATGGCGCACGAACTACTCATC
CGCTACGTCAGAGACACAATGTTCCACTCGCCAGCGCTCCTCTATGCCGA
GAGTTTCATCGCACCATTCCGAAGTCTTGAATCCCCATGGCAAAGCGAAA
ACATGGCGGAGGTGCACGCCAGCGTAACACAAAAGCACGACATTCCCATG
GTGTCCTTCCGGGATGCGGTTTGGCCGCACAAGGAAGATTACGCCGTTGC
ACAAGACATCTGGGGACACTCGGTCCATCCTGATTGGCAAGTGCACCAGC
TCATGGCCGATGTCGTCGCTTACTACCTTCAACTATCGTACGCCCGGTTC
TTGGAGGTGTATGGCCCGTTACCGAACCCTAGTCCCAGCGAGAGGGAACT
CCAGCGATTTAAGGGTGGGATGGGCTGCCTCGCGAACCCTCGTTCATCCG
TTCTTGAGCTAGGCAATTACTTGGACGGCCCACCCCCGGAAGAGTTGGTG
TCAGTTACAGGATGGTCGGTGTTGAAACTCTCCGGGGAAGCTGGACTGAC
AGGGTTCAGGAAAGATGCC
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