mRNA_Ecto-sp8_S_contig11541.1902.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11541.1902.1
Unique NamemRNA_Ecto-sp8_S_contig11541.1902.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11541.1902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11541contigEcto-sp8_S_contig11541:3983..4559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size577
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143224.889561-UTR-Ecto-sp8_S_contig11541:3982..41101681143224.889561-UTR-Ecto-sp8_S_contig11541:3982..4110Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11541 3983..4110 +
1681143224.91188-UTR-Ecto-sp8_S_contig11541:4476..45591681143224.91188-UTR-Ecto-sp8_S_contig11541:4476..4559Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11541 4477..4559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143224.8989933-CDS-Ecto-sp8_S_contig11541:4110..44761681143224.8989933-CDS-Ecto-sp8_S_contig11541:4110..4476Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11541 4111..4476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11541.1902.1prot_Ecto-sp8_S_contig11541.1902.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11541 4111..4476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11541.1902.1

>prot_Ecto-sp8_S_contig11541.1902.1 ID=prot_Ecto-sp8_S_contig11541.1902.1|Name=mRNA_Ecto-sp8_S_contig11541.1902.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=122bp
MCNSTRLKGFVGELFVSSRYPVAHEAQHPRRPYRKHENEHRPPRRRHLYG
GDNTPILLLYTAGATRPPPTQVGTKFVNFRRAFRVERMVPTVPYFWWVLG
LVQSSRYSFRLPDRSLLSLDR*
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mRNA from alignment at Ecto-sp8_S_contig11541:3983..4559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11541.1902.1 ID=mRNA_Ecto-sp8_S_contig11541.1902.1|Name=mRNA_Ecto-sp8_S_contig11541.1902.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=577bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11541:3983..4559+ (Ectocarpus species8 EcLAC_412)
CCGGATTTTTGTGCCCTGCGGCTGGCACGTTTTAGATACCAGCTCTCGTG
TCCCCAGTATCTAGATATACCGTTCCCCTCTGTTTGCTGGGCGGTCACAC
AAGGAGAAGACCGCGCACCAGCCGCGGTATGTGCAATAGTACTCGATTGA
AGGGGTTCGTAGGTGAATTGTTTGTCTCTTCTCGATATCCAGTAGCACAC
GAAGCCCAGCATCCTCGCCGACCCTACAGAAAACATGAGAACGAACACCG
CCCCCCCCGCCGCAGACACCTGTACGGCGGAGATAACACCCCCATACTGC
TGCTGTACACAGCAGGCGCAACACGACCTCCCCCGACCCAAGTAGGTACT
AAATTTGTAAATTTTAGACGTGCATTCCGTGTAGAGCGCATGGTACCCAC
CGTGCCATATTTTTGGTGGGTGCTTGGGCTGGTTCAAAGCTCACGATACT
CTTTTAGACTACCCGATCGCTCCCTTCTCTCTTTGGACAGGTAATTTTCA
GATGACCTCGCGGAGAGATTGTCCCCTCCCTCCAGCCATTCCTCAACATC
GGGCGTGGTGGTGACTGAACCCCTGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11541:3983..4559+

>mRNA_Ecto-sp8_S_contig11541.1902.1 ID=mRNA_Ecto-sp8_S_contig11541.1902.1|Name=mRNA_Ecto-sp8_S_contig11541.1902.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11541:3983..4559+ (Ectocarpus species8 EcLAC_412)
ATGTGCAATAGTACTCGATTGAAGGGGTTCGTAGGTGAATTGTTTGTCTC
TTCTCGATATCCAGTAGCACACGAAGCCCAGCATCCTCGCCGACCCTACA
GAAAACATGAGAACGAACACCGCCCCCCCCGCCGCAGACACCTGTACGGC
GGAGATAACACCCCCATACTGCTGCTGTACACAGCAGGCGCAACACGACC
TCCCCCGACCCAAGTAGGTACTAAATTTGTAAATTTTAGACGTGCATTCC
GTGTAGAGCGCATGGTACCCACCGTGCCATATTTTTGGTGGGTGCTTGGG
CTGGTTCAAAGCTCACGATACTCTTTTAGACTACCCGATCGCTCCCTTCT
CTCTTTGGACAGGTAA
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