mRNA_Ecto-sp8_S_contig11484.1847.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11484.1847.1
Unique NamemRNA_Ecto-sp8_S_contig11484.1847.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11484.1847.1 vs. uniprot
Match: A0A6H5KZY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.020e-9
Identity = 41/76 (53.95%), Postives = 46/76 (60.53%), Query Frame = 3 
Query:  192 ASSKRQRKASAQPTAEKRGGGRTVAPHKSATSLPPFLT----QGRTKWFCQEDGCTTSPSYGNGHSNKAEFCSKHS 407
            AS+KRQR  S+  T E+ GG  T AP K     PP  T    +G+   FCQEDGCT  PSYGN  S  AEFCSKHS
Sbjct:   73 ASAKRQRTTSSPGTKEQCGGRATAAPRK-----PPTRTTAGHRGKRPLFCQEDGCTRRPSYGNASSKTAEFCSKHS 143
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BLAST of mRNA_Ecto-sp8_S_contig11484.1847.1 vs. uniprot
Match: D8LFM7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM7_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.650e-8
Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = 3 
Query:  177 VSPANASSKRQRKASAQPTAEKRGGGRTVAPHK-SATSLPPFLTQGRTKWFCQEDGCTTSPSYGNGHSNKAEFCSKHSNAG 416
            ++PA ASSKRQRK SA  T     G  T A H  S  +   +  QG+   +CQE GCT  PSYG  H+N A+FCS+HS  G
Sbjct:    5 ITPARASSKRQRKTSAPETT----GXXTAAIHTTSRRTTARYHDQGQR--YCQEHGCTAQPSYGQAHNNNAQFCSQHSKPG 79
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BLAST of mRNA_Ecto-sp8_S_contig11484.1847.1 vs. uniprot
Match: D7FU63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU63_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 5.870e-6
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 2 
Query:  311 PDEMVLPRGRLHNVAIVRQWPQQQGGVLLKTLKRR 415
            P+  VLP GRLHNV I+RQWPQQ+GGVLL   + R
Sbjct:   69 PEATVLPGGRLHNVIIIRQWPQQKGGVLLTACQAR 103
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11484.1847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZY0_9PHAE1.020e-953.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFM7_ECTSI1.650e-848.15EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FU63_ECTSI5.870e-665.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11484contigEcto-sp8_S_contig11484:480..4526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size417
Hectar predicted targeting categoryother localisation
Exons5
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143220.7209141-CDS-Ecto-sp8_S_contig11484:479..6011681143220.7209141-CDS-Ecto-sp8_S_contig11484:479..601Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11484 480..601 -
1681143220.7295551-CDS-Ecto-sp8_S_contig11484:1158..11711681143220.7295551-CDS-Ecto-sp8_S_contig11484:1158..1171Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11484 1159..1171 -
1681143220.7384374-CDS-Ecto-sp8_S_contig11484:1452..15611681143220.7384374-CDS-Ecto-sp8_S_contig11484:1452..1561Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11484 1453..1561 -
1681143220.7470114-CDS-Ecto-sp8_S_contig11484:3862..39521681143220.7470114-CDS-Ecto-sp8_S_contig11484:3862..3952Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11484 3863..3952 -
1681143220.7557735-CDS-Ecto-sp8_S_contig11484:4443..45261681143220.7557735-CDS-Ecto-sp8_S_contig11484:4443..4526Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11484 4444..4526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11484.1847.1prot_Ecto-sp8_S_contig11484.1847.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11484 480..4526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11484.1847.1

>prot_Ecto-sp8_S_contig11484.1847.1 ID=prot_Ecto-sp8_S_contig11484.1847.1|Name=mRNA_Ecto-sp8_S_contig11484.1847.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=139bp
QATPGIDDNKVKEEEQEQGKLVSMSAPQPGKRKLGGMAKALQRYSILTAG
SRQPNGETLSAPQTRRPSANGRPPHNQQRKNAGAVGRWHHTSRRRVYPLF
SPRAGRNGSAKRTAAQRRHRTAMATATRRSSAQNTQTQG
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mRNA from alignment at Ecto-sp8_S_contig11484:480..4526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11484.1847.1 ID=mRNA_Ecto-sp8_S_contig11484.1847.1|Name=mRNA_Ecto-sp8_S_contig11484.1847.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4047bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11484:480..4526- (Ectocarpus species8 EcLAC_412)
CAGGCTACTCCCGGGATAGATGACAACAAGGTGAAGGAAGAGGAGCAGGA
ACAGGGTAAGTTAGTTTCCATGTCTGCGCCTCAGTGTTATGTAGACTATT
TAGACGTGTTGTCGCACCGACGTCCTAGGGGTACAGATCACGTGTGTTTA
GCTCAATTGCCGTTGCTCGATGAACTTTGCAGCGTGGTAGGTAAGGCCTT
GGTTGAAGATAGCCGCTATTCTGGTTACAATGACCGTCCACTTTCGCACA
AAAACGGGTCGGGGGATACCCATTCCGTCCAAGCCGATACGTCATGGCAA
AGACTCCTTCAGTCCGTTGCATGCATTGTGGGTTTATCTTTGGCGATCAG
CTCAGACCCAAGCCTATGTCTTCGTTGCCGGTTCCCTACAAACGAGCGGT
GTTACTATGTCCATCGTTTCGTGGTCAGGTAGCACGAATGATTGTATTGT
ACTCAATGTTGTGGTGTGTAGCATAGAACCTTCGTGTAGCCCCAGAATCG
TGTTTTGGATGGGACAGTGCTTGCGGCATCAACGGTACCCATTCTTCCTA
GTTGTCGGATGACCCGCCGCCAAGGCCAGGCAAGCGCAAGCTCGGGGGTA
TGGCCAAGGCCCTCCAGCGGTACAGCATCTTGACAGCCGGCAGCCGACAA
CCCAATGGTGAAACGTGACTAGGAGTGTGATGTACCGGTGATCAACTGCA
GCTATGGCACGCGATGCTGGGGTCAGCAGCGTTTAAGCTGTGGTTCTTCA
GGGTTTCAGGGTCTCTCTTTGGCTTTGCTTTTAAGCCAGCAACATTCATC
TCCCGAGACCATCCACCCAAATTCTACGGCCTCGCTAGTTGGCAAATTGT
CCTCCCGTGTCGATTTTGATATATTTTGCTCAACCTGTCTGCATACCGAC
GTAGCGCGTGCAAGGGACCACTCCTGTCTAGCGTCTAGATAATGGCATCG
ACGTTCGACGTAGATCAGGCGGCCGACGTTCTCTCTCAGGCAGCATAACC
CATCGATACCTTGGAACACGATACGGACCACGATCCATCCCATGTCGCAA
CACCTTTGCTGGCAGCACACGGAAGCCTACCTCTGCTGCAAAACCTCAGT
ACCATGGTTTTTCCTGAGGTGGTCGGGTATGCATGGTGATGTCGGCAGTC
CTGCATGTGTGATATTGTGTGTGGGTCACACACGCCGTCAGCGGAGCACG
CAGTGTAGATGGCCCTGTAGCGTTTGTATTTTCGCGAAAGCTGGCATGTT
TTAACGGATCAGCCGGTGAGCGGTGCACGATGGAGAAACATCGACTTGTC
GCATATGTTCCACAGTTTTGTATCCAAGGGTCGCGGCCACGCGTGCGCGT
GACGGAAGTGTGTCGTTCTTGGGTATTTGACACAACATGGCAACCCAGGT
CAGGAAGCGCCTCAGCCGGATATTTGGCAGCGTTAAATCAGGCCAGCTTG
TTGGCCAACACTCCCCCCTTGCCCCCCTGCTGTGTCAATAAACTATGGGA
TACCGGCCGCGGCGGATTTAGCTGCAGCGATACCCTCGTTTTCCGAAATA
TTCCCTGCCCGGACGGGAAATATGACCAGTCCAATGTGCCATATTTCTCC
TCGGAAATCACCTTCTGCTTCAACCACCAGACATTACAAAACGGATGGCA
ACCTTGCGACTCAAATCCTACGAGAGCAACCGCAATCCCAGGCGCGCTTC
TAAATGACACGTCGTCTGAGATAGATTATACATCGTGCATTCCAGAAGAG
AAGCCGGTGGATACGTGGTGGCTAAAAAGAGAGTGTGAAGACGCAGACAC
CAAACGAATCATCGTACTGAACTCGGCGTAAGTCCACCCAGAATCCCGAC
AATCACACACCTTGCATCTCTTCCTATGCCATAGGTAATATTTGACAATT
GATTTAGACGAACTGCAAGGGGATTGTAGGGGGGCATGGTTGCCTTCAGG
GGGTTGTATGTTGCACTTGTTTGTTGGGAAGCGTTTGATCAGTGTTCACT
GCCCTGAAGGAGCAGTCACGGACACGTGAACCACCGCAGCAATTTGCGCC
GTCACGCGCCCCGTTTTTGTATGATTCGTGTGCGTGTCTCCTCTTCCTCT
CTCTGCCACCACACAACACTCATTACTTCGGGAATGCTGCGTTCATGTTC
TGCTGCAGTCGGCATGTCTATCTTGCTGTGTTTTATCAACGCTGTATCTC
GGATTTCGGTTACTATAATGAAATTTTGAGGTGAAATATTTCTGTATGGT
TGTCTTCTGGTTGGAGTAGAAGGCGTTTGGGTACTATTGCCATTCAGGCA
AAGGAATAATATCAGGCTACCATTATGCACAACCATAGCCGTGGCAGGAT
ACTCATGCATACCTCGGGCTTTTGGTGACGCGGCAGGGTGGGAATGAGCG
TTGACCAATATGCTACAGTCTCACTTCAAGAGGATTCAAAGGATACCTGG
GTACCAGTTGTTGTACATCGGCAATAGGTCAACTCTCTCCCCGAACCAGC
AGAAAAAAAAACTGTTGAAAGAAATTTCACACGGGGCCAATTCTCGAACA
ACAGCTGTGTGTAGGCTTTCTGTCTCCCAACCTATCCCACCGGGGGATAT
AACCATCGAGGCTTAGACAGTCCCATGCTCCACCTGGCCATTTTCTTTCT
CAATATAGATATATCATCTCGATCGAAGCACCATGAAACCTCGCCGCTAT
AGCTTCCATTGCTTCCTGAATGTTTCAAACGTTGTTCGTGGCAGCTCTGC
TCGTTCTACAAGTTGAAGCTGGCCTGCACTGAATCGATCGCATACAGGGC
GATGTGTTTGTACTGTATTTACAGTTTAGAGAATTGAAGGGGCAGCTTTG
CGAAATATCCTGACCCATCCATGGTATCATGACTCGATTGCAGCTGTGCA
TGCGTTCACCGGATATTCTAAATCTGATGTTTTGTTTCCCCTCACATGGT
TATACTTCGTGTTAGATTGTCAGCCCCGCAAACGCGTCGTCCAAGCGCCA
ACGGAAGGCCTCCGCACAACCAACAGCGGAAAAACGCGGGGGCGGTAGGA
CGGTGGCACCACACAAGTCGGCGAGTGGAAGTTTTGTTCTCCACGCGTTT
CTATGCGAGAAATCGTGCCTACGGGGTTGACTCGTGCATGCTTTGGTTAG
GGCATGTGAAGCACGGCATTCATACTTCGCCTCCTTACCGGGCAGCTGAT
GGTTGGTACTTGATTGGTGGGGTGGGGTCGACTATTGTACTGTTGGACAC
CCTATCGGTAATACACAGTTGGGGGAATCGAGCACCTGCTAAAGCGGTTT
TCAGTGCTGGAAAAAACTGATGAAGAGATATAATCGACGAAGCTCGCGAC
TGTAGCGAGTCTACCCCCGTGTCGGTTAGCGTTGTTTCCGACGGTCAGTA
CCGCTTCTCTTGAATGGTTCGGTTTCAGTAGTATTTGTCGAAAGATAAGA
GGCATACATGCCGAGTGTGTTTCGCACTTTCACTGCTAGTACAAGCCGGG
AGCCTCAAGTACACACAATCGCTTCGCACCTACTCTATGTGCGCAAACGG
GAACAGGATGTATCTTGAGTGGCGTTGAAGACGGCAGGCAGGCTCTCCCA
CAATCCAATTTAACCCGTCTCTCCAGGCGGGTTTGGAGTCGTGTGACACA
CGTGGGAACCTTCGGCGGTTCGAAACCAATCTTCAGCGTCTGTGGAAAAA
CACACGCTTTTTGAGACGGTGCAACTAACTGAACACACCCCAAGATAGTT
GAAGGGAAAGGTTACGAGGAAAATAGGCTTTGTCAACGCGGTTCTCGCGT
GAGAGGAAACCTACTAACTTCAACGTGTCCCCACGGACTTGCAACACGCA
CAGCGTGGGCAAGACTGAACAACATTATCCCGGGGGCAGGAATGTCCGTT
TTGAGGTGTTGTGTAGTTTATTGAGTTTTCTCACCCAGGGCCGGACGAAA
TGGTTCTGCCAAGAGGACGGCTGCACAACGTCGCCATCGTACGGCAATGG
CCACAGCAACAAGGCGGAGTTCTGCTCAAAACACTCAAACGCAGGGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11484:480..4526-

>mRNA_Ecto-sp8_S_contig11484.1847.1 ID=mRNA_Ecto-sp8_S_contig11484.1847.1|Name=mRNA_Ecto-sp8_S_contig11484.1847.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11484:480..4526- (Ectocarpus species8 EcLAC_412)
CAGGCTACTCCCGGGATAGATGACAACAAGGTGAAGGAAGAGGAGCAGGA
ACAGGGTAAGTTAGTTTCCATGTCTGCGCCTCAGCCAGGCAAGCGCAAGC
TCGGGGGTATGGCCAAGGCCCTCCAGCGGTACAGCATCTTGACAGCCGGC
AGCCGACAACCCAATGGTGAAACATTGTCAGCCCCGCAAACGCGTCGTCC
AAGCGCCAACGGAAGGCCTCCGCACAACCAACAGCGGAAAAACGCGGGGG
CGGTAGGACGGTGGCACCACACAAGTCGGCGACGAGTCTACCCCCTTTTC
TCACCCAGGGCCGGACGAAATGGTTCTGCCAAGAGGACGGCTGCACAACG
TCGCCATCGTACGGCAATGGCCACAGCAACAAGGCGGAGTTCTGCTCAAA
ACACTCAAACGCAGGGA
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