mRNA_Ecto-sp8_S_contig11476.1842.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11476.1842.1
Unique NamemRNA_Ecto-sp8_S_contig11476.1842.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11476.1842.1 vs. uniprot
Match: D7G6E8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6E8_ECTSI)

HSP 1 Score: 447 bits (1151), Expect = 2.410e-157
Identity = 235/239 (98.33%), Postives = 236/239 (98.74%), Query Frame = 1 
Query:    1 RSLLHGIAKSTGGVLPNISDIEAIWQHIVRLGYTDEEGRLPFARWIIFCSKTREVHALGKSLDFNKGVCRKSLTSGTRATLSAMVLGEDDAVMAAQRAALTKKPQERASVAVEKKRAAAAAREGRNRFARSSIMKIKEVFDSIDKDGSGYVDEEEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLCEVHPFAGDADLAKMLEWISEETIQQGAARIVNRELAVAERLEMAELFSM 717
            RSLLHGIAKSTGGVLPNISDI+AIWQHIVRLGYTDEEG LPFARWI FCSKTREVHALGKSLDFNKGVCRKSLTSGTRATLSAMVLGEDDAVMAAQRAALTKKPQERASVAVEKKRAAAAAREGRNRFARSSIMKIKEVFDSIDKDGSGYVDEEEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLCEVHPFAGDADLAKMLEWISEETIQQGAARIVN ELAVAERLEMAELFSM
Sbjct:   77 RSLLHGIAKSTGGVLPNISDIQAIWQHIVRLGYTDEEGLLPFARWITFCSKTREVHALGKSLDFNKGVCRKSLTSGTRATLSAMVLGEDDAVMAAQRAALTKKPQERASVAVEKKRAAAAAREGRNRFARSSIMKIKEVFDSIDKDGSGYVDEEEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLCEVHPFAGDADLAKMLEWISEETIQQGAARIVNPELAVAERLEMAELFSM 315
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BLAST of mRNA_Ecto-sp8_S_contig11476.1842.1 vs. uniprot
Match: A0A6H5JDE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE5_9PHAE)

HSP 1 Score: 441 bits (1135), Expect = 4.470e-153
Identity = 231/239 (96.65%), Postives = 235/239 (98.33%), Query Frame = 1 
Query:    1 RSLLHGIAKSTGGVLPNISDIEAIWQHIVRLGYTDEEGRLPFARWIIFCSKTREVHALGKSLDFNKGVCRKSLTSGTRATLSAMVLGEDDAVMAAQRAALTKKPQERASVAVEKKRAAAAAREGRNRFARSSIMKIKEVFDSIDKDGSGYVDEEEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLCEVHPFAGDADLAKMLEWISEETIQQGAARIVNRELAVAERLEMAELFSM 717
            RSLLHGIAKSTGGVLPNISDIEAIWQHIVRLGYTDEE RLPFARWI FCSKTREVHALGKSLDF+KGVCRKSLTSGTRATLSAMVLGEDDAVMAAQRAALTKKPQERASVAVEKKRAAAAAREGRNRFARSSIMKIKEVFDS+DKDGSGYVDEEEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLCE+HPFAGDADLAKMLEWISEET QQGAAR VNRELAVAERLEMAELFS+
Sbjct:  128 RSLLHGIAKSTGGVLPNISDIEAIWQHIVRLGYTDEEERLPFARWITFCSKTREVHALGKSLDFSKGVCRKSLTSGTRATLSAMVLGEDDAVMAAQRAALTKKPQERASVAVEKKRAAAAAREGRNRFARSSIMKIKEVFDSVDKDGSGYVDEEEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLCELHPFAGDADLAKMLEWISEETTQQGAARKVNRELAVAERLEMAELFSI 366
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11476.1842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6E8_ECTSI2.410e-15798.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDE5_9PHAE4.470e-15396.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11476contigEcto-sp8_S_contig11476:3880..6333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size720
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionEF-hand domain
Ec32 orthologEc-10_001590.1
Cds size720
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143220.3093884-CDS-Ecto-sp8_S_contig11476:3879..40681681143220.3093884-CDS-Ecto-sp8_S_contig11476:3879..4068Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11476 3880..4068 -
1681143220.3170397-CDS-Ecto-sp8_S_contig11476:4389..45061681143220.3170397-CDS-Ecto-sp8_S_contig11476:4389..4506Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11476 4390..4506 -
1681143220.3241253-CDS-Ecto-sp8_S_contig11476:4811..49921681143220.3241253-CDS-Ecto-sp8_S_contig11476:4811..4992Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11476 4812..4992 -
1681143220.3311906-CDS-Ecto-sp8_S_contig11476:5531..56471681143220.3311906-CDS-Ecto-sp8_S_contig11476:5531..5647Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11476 5532..5647 -
1681143220.3383877-CDS-Ecto-sp8_S_contig11476:6216..63331681143220.3383877-CDS-Ecto-sp8_S_contig11476:6216..6333Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11476 6217..6333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11476.1842.1prot_Ecto-sp8_S_contig11476.1842.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11476 3880..6333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11476.1842.1

>prot_Ecto-sp8_S_contig11476.1842.1 ID=prot_Ecto-sp8_S_contig11476.1842.1|Name=mRNA_Ecto-sp8_S_contig11476.1842.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=240bp
RSLLHGIAKSTGGVLPNISDIEAIWQHIVRLGYTDEEGRLPFARWIIFCS
KTREVHALGKSLDFNKGVCRKSLTSGTRATLSAMVLGEDDAVMAAQRAAL
TKKPQERASVAVEKKRAAAAAREGRNRFARSSIMKIKEVFDSIDKDGSGY
VDEEEWRRLTEDTPLAASDDTFLFIEREREGKISIVEVLCEVHPFAGDAD
LAKMLEWISEETIQQGAARIVNRELAVAERLEMAELFSM*
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mRNA from alignment at Ecto-sp8_S_contig11476:3880..6333-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11476.1842.1 ID=mRNA_Ecto-sp8_S_contig11476.1842.1|Name=mRNA_Ecto-sp8_S_contig11476.1842.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2454bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11476:3880..6333- (Ectocarpus species8 EcLAC_412)
AGGTCACTGTTACACGGAATAGCGAAATCAACGGGTGGTGTGTTGCCAAA
CATCTCTGACATCGAGGCTATCTGGCAACACATCGTACGACTTGGCTACA
CCGATGAAGAAGGGCGGGTACGTGTTTCGAATTCGATAAACGCGGCGTTC
TCATCGAAGTTGAGATATCCGATGTTTACGGACTTACATCGAAACTCTTT
CTTTGGGCCTTACGCCAAATGTCAAATCGAGTGGATAGCGGTTCCACTGG
ATCAAAAGGCTCAGGTTGCAGGGTAGTTTGTTGTGCGTGTTGGATTTCAT
GTCTCACTTCGACCGCGTTCAAGAATATGCCCGACATGAATTCCATTATC
CAAGCACCGCTTGGACGGGGTTGGCCGAACAGGGTATGACCTCCCCAATC
AGTATCTGATCGAGAAAACAATAGGTGTGGTACACGCTCGAGTGTCAATG
CGTCCTCAAACTTTGTGGCCGGCTGATCGCTTCAAGTTAAGGGCGGCTTG
TCCGAACAGTAGATGGGATGTGAATCAAGCACTTTTCGCCAACAGCAAAC
CTCGATCTAGGGCCACATGTTCTACGCCGGCATCCAATGCTCGAGGCAGC
CGGTGACGCCATATCGCATATCGCTGTCCGACGAATCCATCACCATCTGG
CCCCTCGCTTCGATGCGTTTCGTTCTATACATGCAGTTGCCGTTCGCGAG
GTGGATAATTTTCTGTTCCAAGACCCGCGAAGTTCACGCTCTGGGGAAGT
CCCTTGACTTTAACAAAGGGGTTTGTCGGAAGTCTCTGACGTCGGGAACA
AGGTGCGTGGTTGTTCAAAGGCCGAAAACTACGACCTCCATCTAAAGATA
AGAGTGCATTCATGCATACTACCCGAAACACCGGGATGAACGGCGGGCTG
AGTTGCCTCACTCTAGTTAATGTTCTATTAGTTGTTCGTGCTGACGAGGA
GGTTATGTTCCGTAGGCCACCGTGCAGCGCCTACAATCTAGGCGCCCGGG
AGATATATCGATGCAGGTCTTCCAGCGTGGCGTTGTGTGTAGCATACGCT
GAATACAATATGGCTAGCCCTGTGGTGAACATTACATTATTGTTCTTGCC
TCTTCAACTCAACCAAGATACCTGCAGGGTTGTCTGGCACATACGATACG
GGGCCTAGTAAATGAACCTCACAATTCCACGACTTCCTTTCCAAAACAGG
CCGTGCGCGATTTCACTCATGGTCTCTCGAAGCTGTCGTTGAGAAACACA
TATTAGATCTGTGTGCACACGTCCTACCAGATATGAATGATGAGAAATGC
ACGATTGTTTCCAAACATTTGGTACCAACCCCCCCGATCAGGGCAACGCT
TTCTGCGATGGTCCTGGGAGAAGACGACGCCGTTATGGCGGCTCAACGAG
CCGCACTCACGAAGAAGCCCCAGGAGCGAGCATCGGTAGCCGTAGAGAAG
AAGAGAGCGGCGGCGGCAGCGAGGGAGGGCAGGAACAGGTTCGCGCGGTC
CAGCATCATGAAGATCAAGGAGGTGAGAATCACGGGTTTGCGGTGATTGC
TAGTGGGATGTATGACTACTGTCCGTGAGCAACGGCCTTGCTCTCTCTTC
CATGGGGATAGCCAGTGTACTTTTGTGGGGTTACAAGTATTCAGGTGCGA
TTTCTCGGAGTACCTAGACGTCGAGGGTCTTGTATTTCTCGACGATGTGC
AAGAGGGTGGCAACGCACGTTCGGCCCGTCGAGCAACAAGTCTAAACGCG
GAGTGCCAATACCGGTTTACCGCCCCCGCTTGTCTCACTTTGGTGCTATT
CACGTTTGCTATATGGATACCCGAAAGGTGTTCGACAGCATCGACAAGGA
CGGCAGCGGCTACGTCGACGAAGAAGAGTGGCGGCGACTGACGGAAGACA
CCCCGCTGGCTGCCTCGGATGACACTTTTCTCTTCATCGAACGGGTGCGT
AAACTTGCAGCAACAGGGGTATCTTGACGTGGTCCCCCAAGAGTGTTCAG
CGCGCGGCAATATATCGCTTTCGGAAGCCTTCTTCATCCAACTCAAAAGC
AACCGACTCAACTGTTTGGCAATAGTATGCGTTACCGGTGCACACGGGCT
ACCGCACCCTCAAAGGATGGTTGCTCTCTATAGTACACACGTACCCTCCG
GACTGCCCTCATAACACAAGCGGGCAACACCTCAATCGTTCCCGCTTCAC
CTGAAGAATGCCGCCGAAGTGAACCCTCTAGCAACTACCGATAATTTTTT
CTGGCCTCTTCGCAGGAACGAGAGGGGAAAATATCGATCGTGGAAGTTCT
GTGTGAAGTTCACCCATTCGCTGGTGATGCGGACCTGGCGAAGATGCTGG
AGTGGATAAGTGAAGAGACTATACAACAGGGAGCGGCGAGAATAGTGAAC
CGGGAGTTAGCCGTCGCCGAGCGTTTGGAGATGGCGGAGCTCTTTAGTAT
GTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11476:3880..6333-

>mRNA_Ecto-sp8_S_contig11476.1842.1 ID=mRNA_Ecto-sp8_S_contig11476.1842.1|Name=mRNA_Ecto-sp8_S_contig11476.1842.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11476:3880..6333- (Ectocarpus species8 EcLAC_412)
AGGTCACTGTTACACGGAATAGCGAAATCAACGGGTGGTGTGTTGCCAAA
CATCTCTGACATCGAGGCTATCTGGCAACACATCGTACGACTTGGCTACA
CCGATGAAGAAGGGCGGTTGCCGTTCGCGAGGTGGATAATTTTCTGTTCC
AAGACCCGCGAAGTTCACGCTCTGGGGAAGTCCCTTGACTTTAACAAAGG
GGTTTGTCGGAAGTCTCTGACGTCGGGAACAAGGGCAACGCTTTCTGCGA
TGGTCCTGGGAGAAGACGACGCCGTTATGGCGGCTCAACGAGCCGCACTC
ACGAAGAAGCCCCAGGAGCGAGCATCGGTAGCCGTAGAGAAGAAGAGAGC
GGCGGCGGCAGCGAGGGAGGGCAGGAACAGGTTCGCGCGGTCCAGCATCA
TGAAGATCAAGGAGGTGTTCGACAGCATCGACAAGGACGGCAGCGGCTAC
GTCGACGAAGAAGAGTGGCGGCGACTGACGGAAGACACCCCGCTGGCTGC
CTCGGATGACACTTTTCTCTTCATCGAACGGGAACGAGAGGGGAAAATAT
CGATCGTGGAAGTTCTGTGTGAAGTTCACCCATTCGCTGGTGATGCGGAC
CTGGCGAAGATGCTGGAGTGGATAAGTGAAGAGACTATACAACAGGGAGC
GGCGAGAATAGTGAACCGGGAGTTAGCCGTCGCCGAGCGTTTGGAGATGG
CGGAGCTCTTTAGTATGTGA
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