mRNA_Ecto-sp8_S_contig11469.1835.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11469.1835.1
Unique NamemRNA_Ecto-sp8_S_contig11469.1835.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11469.1835.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 1.100e-67
Identity = 124/139 (89.21%), Postives = 129/139 (92.81%), Query Frame = -2 
Query:    3 DDENPAPSVLVSYRKVVSYGNGDDAAVAAASGSPRRDTLGVGAESPVAAEEASSGEHCRVSVAVELGGPVTANWNPCTLVALWGVRSALLRSSAAGVSGDPDVDDVTPAEKPDPGGGDRDPGKAADAGQETGSRRGTGA 419
            DDENP PSVLVSYRKVVS+GNG+DAAVA ASGSP RDTLGVGAESPVAAEEASSGEHCRVSVAVELGGPVTANWNPCTLVALWGVRSALLRS AAGV  DPD+DDVTPAE+ DPGGGDRDPGKA DAGQ+  SRRGTGA
Sbjct: 2084 DDENPVPSVLVSYRKVVSFGNGEDAAVAVASGSPSRDTLGVGAESPVAAEEASSGEHCRVSVAVELGGPVTANWNPCTLVALWGVRSALLRS-AAGVGRDPDLDDVTPAEEADPGGGDRDPGKATDAGQKMDSRRGTGA 2221
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11469.1835.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 3.010e-30
Identity = 79/132 (59.85%), Postives = 85/132 (64.39%), Query Frame = -2 
Query:   24 DDENPAPSVLVSYRKVVSYGNGDDAAVAAASGSPRRDTLGVGAESPVAAEEASSGEHCRVSVAVELGGPVTANWNPCTLVALWGVRSALLRSSAAGVSGDPDVDDVTPAEKPDPGGGDRDPGKAADAGQETG 419
            DDENPAPSVLVSYRKVVS+G+G+DAA+A ASGSPRRDTLGVGAE+PVA EEASSG                                         V GDPDVD VTPAE+PDPGGGDRD GKAA AGQETG
Sbjct: 2804 DDENPAPSVLVSYRKVVSFGHGEDAAIAVASGSPRRDTLGVGAENPVA-EEASSG-----------------------------------------VGGDPDVDGVTPAEEPDPGGGDRDLGKAAGAGQETG 2893
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11469.1835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JYL2_9PHAE1.100e-6789.21FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FMF5_ECTSI3.010e-3059.85FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11469contigEcto-sp8_S_contig11469:4109..4528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size422
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143219.9317732-CDS-Ecto-sp8_S_contig11469:4108..44921681143219.9317732-CDS-Ecto-sp8_S_contig11469:4108..4492Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11469 4109..4492 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143219.944004-UTR-Ecto-sp8_S_contig11469:4492..45281681143219.944004-UTR-Ecto-sp8_S_contig11469:4492..4528Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11469 4493..4528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11469.1835.1prot_Ecto-sp8_S_contig11469.1835.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11469 4109..4492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11469.1835.1

>prot_Ecto-sp8_S_contig11469.1835.1 ID=prot_Ecto-sp8_S_contig11469.1835.1|Name=mRNA_Ecto-sp8_S_contig11469.1835.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=128bp
DAPVPLLLPVSCPASAALPGSLSPPPGSGFSAGVTSSTSGSPLTPAAEDR
NKAERTPHSATKVQGFQFAVTGPPSSTATDTRQCSPLLASSAATGLSAPT
PRVSRRGEPEAAATAASSPFPYDTTFR*
back to top

mRNA from alignment at Ecto-sp8_S_contig11469:4109..4528+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11469.1835.1 ID=mRNA_Ecto-sp8_S_contig11469.1835.1|Name=mRNA_Ecto-sp8_S_contig11469.1835.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=420bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11469:4109..4528+ (Ectocarpus species8 EcLAC_412)
GATGCTCCAGTACCCCTCCTACTACCGGTCTCTTGCCCGGCGTCGGCCGC
TTTGCCAGGATCCCTGTCACCGCCACCGGGATCAGGTTTCTCCGCTGGCG
TGACGTCATCAACGTCAGGGTCTCCGCTTACCCCTGCCGCCGAGGACCGC
AACAAGGCCGAGCGAACACCCCACAGCGCCACCAAGGTGCAGGGGTTCCA
GTTCGCAGTGACGGGGCCCCCAAGCTCGACCGCCACGGATACACGGCAGT
GCTCACCGCTGCTCGCTTCTTCAGCAGCAACCGGGCTTTCCGCGCCAACT
CCGAGAGTATCACGGCGTGGCGAGCCGGAAGCAGCCGCAACCGCCGCATC
ATCCCCATTCCCGTACGACACCACCTTTCGGTAGCTCACTAAAACTGACG
GCGCGGGGTTTTCATCGTCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11469:4109..4528+

>mRNA_Ecto-sp8_S_contig11469.1835.1 ID=mRNA_Ecto-sp8_S_contig11469.1835.1|Name=mRNA_Ecto-sp8_S_contig11469.1835.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11469:4109..4528+ (Ectocarpus species8 EcLAC_412)
GATGCTCCAGTACCCCTCCTACTACCGGTCTCTTGCCCGGCGTCGGCCGC
TTTGCCAGGATCCCTGTCACCGCCACCGGGATCAGGTTTCTCCGCTGGCG
TGACGTCATCAACGTCAGGGTCTCCGCTTACCCCTGCCGCCGAGGACCGC
AACAAGGCCGAGCGAACACCCCACAGCGCCACCAAGGTGCAGGGGTTCCA
GTTCGCAGTGACGGGGCCCCCAAGCTCGACCGCCACGGATACACGGCAGT
GCTCACCGCTGCTCGCTTCTTCAGCAGCAACCGGGCTTTCCGCGCCAACT
CCGAGAGTATCACGGCGTGGCGAGCCGGAAGCAGCCGCAACCGCCGCATC
ATCCCCATTCCCGTACGACACCACCTTTCGGTAG
back to top