mRNA_Ecto-sp8_S_contig11465.1831.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11465.1831.1
Unique NamemRNA_Ecto-sp8_S_contig11465.1831.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11465.1831.1 vs. uniprot
Match: D7FU46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU46_ECTSI)

HSP 1 Score: 577 bits (1488), Expect = 1.430e-190
Identity = 340/391 (86.96%), Postives = 343/391 (87.72%), Query Frame = 2 
Query:  287 MPATSTIPLDDLPGAPEHADVLFAFSVHGLGGSKIAANKSLRGMMASEVAPXXXXXXXXXEAPKKGWLSSLNTAVVGERQEVVSLMLTLSASEETLTTPAAGGAGMPGMPAPPALARRSTGDRPLSVAPARSAMLLSGGRPNTPTVFYQSEHRTFGQQPVSPAAVGRSTSPSGFPDGGGEGGVGGGKQRPMTMSEEGIVHFSIPARVPGNRGSGTNGXXXXXXXEETMVVFVVELWQVVNRSRRALWGSLTLSWDNLMAVPAGPRKCGVFSGLQSERYPTAFLAVRRVYPPLPRPLSMSPRGVSNPAVEKFNPMVTFFTAIRRVADGASAEEDADWLGGTSEFGAGGSGSXXXXXXXXXXX--GSSLTASAEAWELVVCQELAVEGKYTFK 1453
            MPATSTIPLDDLPGAPEH D LFAFSVHGLGGSKIAANKSL+GMMASEVAPXXXXXXXXX     GWLSSLNTAVVGERQEVV+LMLTLSAS             MPGMPAPPALARRSTGDRPLSV PARSAMLL+GGRPNTPTVFYQSEHRTFGQQPVSPAAV RS SPSG             KQRPMTMSEEGIVHFSIPARVPGNRGSGTNGXXXXXXXEETMVVFVVELWQVVNRSRRALWGSLTLSWDNLMAVP GPRKCGVFSGLQSERYPTAFLAVRRVYPPLPRPLSMSPRGVSNPAVEKFNPMVTFFTAIRRV DGA AEEDADW GG S FGAG    XXXXXXXXXXX  GSSLTASAEAWELVVCQELAVEGKYTFK
Sbjct:    1 MPATSTIPLDDLPGAPEHGDALFAFSVHGLGGSKIAANKSLKGMMASEVAPXXXXXXXXXXXX--GWLSSLNTAVVGERQEVVTLMLTLSASXXXXXXXXXXXXXMPGMPAPPALARRSTGDRPLSVVPARSAMLLAGGRPNTPTVFYQSEHRTFGQQPVSPAAVSRSASPSGXXXXXXXXXXXXXKQRPMTMSEEGIVHFSIPARVPGNRGSGTNGXXXXXXXEETMVVFVVELWQVVNRSRRALWGSLTLSWDNLMAVPTGPRKCGVFSGLQSERYPTAFLAVRRVYPPLPRPLSMSPRGVSNPAVEKFNPMVTFFTAIRRVTDGAGAEEDADWFGGASGFGAGXXXXXXXXXXXXXXXXVGSSLTASAEAWELVVCQELAVEGKYTFK 389
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BLAST of mRNA_Ecto-sp8_S_contig11465.1831.1 vs. uniprot
Match: A0A6H5K1V3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V3_9PHAE)

HSP 1 Score: 463 bits (1192), Expect = 4.210e-156
Identity = 258/328 (78.66%), Postives = 266/328 (81.10%), Query Frame = 2 
Query:  287 MPATSTIPLDDLPGAPEHADVLFAFSVHGLGGSKIAANKSLRGMMASEVAPXXXXXXXXXEAPKKGWL-SSLNTAVVGERQEVVSLMLTLSASEETLTTPAAGGAGMPGMPAPPALARRSTGDRPLSVAPARSAMLLSGGRPNTPTVFYQSEHRTFGQQPVSPAAVGRSTSPSGFPDGGGEGGVGGGKQRPMTMSEEGIVHFSIPARVPGNRGSGTNGXXXXXXXEETMVVFVVELWQVVNRSRRALWGSLTLSWDNLMAVPAGPRKCGVFSGLQSERYPTAFLAVRRVYPPLPRPLSMSPRGVSNPAVEKFNPMVTFFTAIRRVADG 1267
            MPATSTIPLDDLPGAPEHAD LFAFSVHGLGGSKIAANKSLRGMMASEV+PXXXXXXXXX         SSLNTA                              GMPGMPAPPALARRSTGDRP S  PARSAMLL+GGRP TPTVFYQSEHRTFGQQPVSPAAV RSTSP GFPDGGGEG + GGKQRPMTMSEEGIVHFSIPARVPGNR  GTNG       EET  VFVVELWQVVNRSRRALWGSLTL+WDNLMAVPA PRKCGVFSGLQSERYP+AFLAVRRV PPLPRPLSMSPRGVSNPAVEKFNPMVTFFTAIR++ +G
Sbjct:    1 MPATSTIPLDDLPGAPEHADALFAFSVHGLGGSKIAANKSLRGMMASEVSPXXXXXXXXXXXXXXXXXXSSLNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMPGMPAPPALARRSTGDRPPSGVPARSAMLLAGGRPTTPTVFYQSEHRTFGQQPVSPAAVSRSTSPLGFPDGGGEGRMEGGKQRPMTMSEEGIVHFSIPARVPGNRSPGTNGGGDGEGEEETTAVFVVELWQVVNRSRRALWGSLTLTWDNLMAVPASPRKCGVFSGLQSERYPSAFLAVRRVCPPLPRPLSMSPRGVSNPAVEKFNPMVTFFTAIRQLVNG 328
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11465.1831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU46_ECTSI1.430e-19086.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1V3_9PHAE4.210e-15678.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11465contigEcto-sp8_S_contig11465:599..4376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1471
Hectar predicted targeting categoryother localisation
Exons5
Cds size1185
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11465.1831.1prot_Ecto-sp8_S_contig11465.1831.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11465 599..4090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143219.7432694-CDS-Ecto-sp8_S_contig11465:598..8181681143219.7432694-CDS-Ecto-sp8_S_contig11465:598..818Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11465 599..818 -
1681143219.7528389-CDS-Ecto-sp8_S_contig11465:1245..14121681143219.7528389-CDS-Ecto-sp8_S_contig11465:1245..1412Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11465 1246..1412 -
1681143219.7617054-CDS-Ecto-sp8_S_contig11465:1961..20271681143219.7617054-CDS-Ecto-sp8_S_contig11465:1961..2027Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11465 1962..2027 -
1681143219.7709854-CDS-Ecto-sp8_S_contig11465:2411..28891681143219.7709854-CDS-Ecto-sp8_S_contig11465:2411..2889Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11465 2412..2889 -
1681143219.7803674-CDS-Ecto-sp8_S_contig11465:3836..40901681143219.7803674-CDS-Ecto-sp8_S_contig11465:3836..4090Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11465 3837..4090 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143219.7893739-UTR-Ecto-sp8_S_contig11465:4090..43761681143219.7893739-UTR-Ecto-sp8_S_contig11465:4090..4376Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11465 4091..4376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11465.1831.1

>prot_Ecto-sp8_S_contig11465.1831.1 ID=prot_Ecto-sp8_S_contig11465.1831.1|Name=mRNA_Ecto-sp8_S_contig11465.1831.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=395bp
MPATSTIPLDDLPGAPEHADVLFAFSVHGLGGSKIAANKSLRGMMASEVA
PPPQQQQQQKEAPKKGWLSSLNTAVVGERQEVVSLMLTLSASEETLTTPA
AGGAGMPGMPAPPALARRSTGDRPLSVAPARSAMLLSGGRPNTPTVFYQS
EHRTFGQQPVSPAAVGRSTSPSGFPDGGGEGGVGGGKQRPMTMSEEGIVH
FSIPARVPGNRGSGTNGGGDGGGGEETMVVFVVELWQVVNRSRRALWGSL
TLSWDNLMAVPAGPRKCGVFSGLQSERYPTAFLAVRRVYPPLPRPLSMSP
RGVSNPAVEKFNPMVTFFTAIRRVADGASAEEDADWLGGTSEFGAGGSGS
GDSGGGSGGGVGSSLTASAEAWELVVCQELAVEGKYTFKASGCN*
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mRNA from alignment at Ecto-sp8_S_contig11465:599..4376-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11465.1831.1 ID=mRNA_Ecto-sp8_S_contig11465.1831.1|Name=mRNA_Ecto-sp8_S_contig11465.1831.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3778bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11465:599..4376- (Ectocarpus species8 EcLAC_412)
CGTTGGTCGAGCTTCGCTTCACCCACGCAACCTCAACCAGCAACAGGCAG
GGCGCGGCTACTCCGTGCCTCTAGCCCGAGTGAACCTGGCCTCCTCCTGA
TTCAGCCAGAACAATTCTGGAAGTGTGTTGCACACACGCACCCTAGATTT
AAAGAGCACAAAAAGGTTCAGTGTGGGGAGTGCAAGTGCGTTGCAGCAGC
AACCACCGGGATACCAAGCACGCGCTGCTTCCAAACCAAGACATACCGTT
GGCAAGTGACGTCTTTTCTACGGGCTGGGCCGCACGATGCCCGCGACAAG
CACCATCCCGCTCGATGACTTGCCGGGAGCGCCGGAACATGCCGATGTCC
TGTTCGCCTTTTCTGTGCACGGCTTGGGAGGTTCTAAGATCGCAGCGAAC
AAAAGCCTGAGGGGCATGATGGCTTCCGAAGTCGCGCCGCCGCCGCAGCA
GCAGCAGCAGCAGAAGGAGGCGCCCAAGAAGGGCTGGCTCTCCTCCCTCA
ACACCGCCGTGGTCGGCGAAAGACAAGAGGTTGTCTCACTGTGAGTCGTT
GTGTGGGATTGCTGTGAGGTGGATAGGATAAAAGAATGGTATGTATGCAC
TTGAGGTGTAGACTATTAGGTAGACTCCACGCGGCACTTTCTGCGCGGTG
TTCACCTACAAACCGCATGGGTCGCGCATGATTGTTACCATAAACAGCAG
TGAAGGGCGTAAGCAGTGCGATCACGCCGCCCCAATTTCGCACAACTACT
GTACCACCGAAATTTTCACTTGAGACAGCAGTTTTGGCGTGTGTGTTTCT
GGGGCATTGTGCGAGAACGCGCTGGAGTCGGAACGTTGCTATGCGTTGAA
GAACTCATCGTACATGCCATACTCAGAACACACCTTGCGGCAGGTCAGCA
ATATATATTGCGACAGCCGTTGCTGGCAGCGCACCCTCCATGCGAATACC
TCACGTTGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGGAAACCG
GGCGTGCTCCGTCCCTTTGTAGGGATGCGAGGTCAATGGTCTAACGACTA
CAGCATGCACGGCTTTGAGTACACCCCTCCGCCCCCCCTCGTCACCGATA
CCCGGTATATCCCTCCTCCGAAGATTGTAGGGATGGCGAGGTCAATGGTC
CAACGACCAAAGCATGCATTTGCATGAGTGCAACTCCCTCGTCCCCTCCC
TCCTTCCCCGCTTTCAAAACCTTCTACACATGCGTGCATACACAGCAGTT
AGCGCCCGCACTTCAGAGCATCTATTTTTTTTTGTTGCCTAGGCTGGGGT
TCGTAGACCTAGGGTTATGCTATAAATGGTGGCTTATGGGTGGTTTGGTG
TTTAGTGTAACGGTTCTTAACCGAGCTCACCAATGGTCCTCAAGATCTCC
GTTTTTTTTTCAGTTTTTCAAGGCTCTTTTTCTTAACTCCCAAGTTCTTA
AAGTGCGTGCGCTAACTGCAACATGTTTGTCTCTCAGGATGCTGACTCTC
TCAGCGAGCGAGGAAACATTAACAACGCCGGCCGCCGGAGGGGCGGGGAT
GCCAGGGATGCCCGCCCCGCCCGCCCTGGCTCGCCGATCGACGGGGGACC
GGCCCCTCTCCGTAGCGCCGGCGAGATCGGCGATGCTGCTCTCCGGCGGC
AGACCCAACACCCCCACCGTCTTTTACCAGTCGGAGCACAGGACCTTCGG
GCAGCAACCCGTGTCGCCCGCCGCCGTTGGCCGATCGACATCCCCGTCCG
GGTTTCCAGACGGCGGAGGGGAGGGTGGGGTGGGGGGAGGAAAGCAGCGG
CCGATGACCATGTCGGAGGAGGGGATTGTGCACTTTTCGATCCCCGCGAG
GGTTCCGGGGAACAGGGGTTCCGGGACGAACGGAGGCGGGGACGGGGGGG
GGGGTGAAGAAACGATGGTTGTTTTTGTGGTGGAGCTGTGGCAGGTCGTC
AACCGTTCCCGTCGGGTGAGAAAGTGATCGCGGTTCGTCGTCCCTTTCCG
CGATGCCACTCGGGCTGGCCTTTTCTTATGATGTTGGTGTGTTCGTTGTG
AAACGCCCAGAAGGGAAAATACTCAACATTCCCGCTTCATGAATGCCCAT
CTTTTTCACAAGCATGGTGACCCCGCAGACTGTAAAACAATACGGGTGTG
TAACTTTTACGGATGCTTCCCCGCATTGAATACATTATTGTTCAAGAGAA
GCCATGAGTGTCTATAGGGTGGGACCTTGATCGTGAGCGTAAAACCAAGC
GAATATCCCCAGAGAAAGGCGTGCGTTGCTCTGTTGTGTGTCTTGTCTCT
AAACGATGGTCGTCCGACCTCCGGCTCCGTTGCACCGCGCTTGAGAAAGG
CCCTGTGGGGATCGCTAACGCTGTCCTGGGATAACCTGATGGCCGTGCCA
GCGGGCCCGAGAAAGGTGAGGGAGAGGTGGACCATTGCTTGTACCTTGGG
GAAGAAGTTGCGGTCGAGTGCTACAGAAGTTAACACGAGGTGATGGTATT
TGTCACCGGTGGCCTGCAACGTGCTTTTGGCGGCAGATGATTCAAGTTTT
TTATTGTGGTGTTTCTTACCAGCACCTAACGAATTCATCTCTATCAACAG
ACAAGGACTCCAGCATAGCCATGACTTCATTGTGTACATGACCAACCCGT
GTAGTCTCTGAGCAGCACAGTCTACAGCCATACTCTCGACACCTAATCTC
TTAGCAGCATAGTATACAGTTGTACTCCCGTGGAGAGGTATTTGAATCGA
CTCGCCCCACCGGTGAGTCTCGCCGGAGAGTAGACGATGTGTATTCACAT
ATACACCACCCTCGGTTAATCACAGCTTGCCTTAGCGACTGCGGCTTGTA
GAGCTGTAGGTAGAGCCAACCTTCCTTCGGCAGGAACGAACCCTTTTCAC
GCAGCATTTCACCCCCTGCTCCCCCCCCCGTCGGCGCCCCCCCCCCCCCC
CCCCGGCCAAACAGTGCGGCGTGTTTAGCGGGCTTCAGTCAGAGCGGTAC
CCGACAGCCTTCCTTGCGGTCAGGCGGGTTTATCCGCCTCTCCCCCGGCC
GCTGTCCATGTCCCCACGGGGGGTGTCTAACCCGGCCGTCGAGAAGTTCA
ACCCCATGGTGACCTTCTTCACTGCCATCAGGTTAGGCGCTCCGTGACGT
CATGGGGAACCTTGACCACCAGAGGTTGCGTAAGATGACACGCACACATC
CTGGACCCATTTTCGGACCGCCTTTGTCGCGATTATTAAGTTGTGCGAGG
AAATAGAACAGGGAGGGGGGACGCAGACCCTACTCCCTGACCCTAACCCT
ATAACCCAACTTCCCCGATTGTATGCTTTATCCAGCATGTTCACACGATA
GGCAAAACCCTGCGAGGGCTACTGTAATTTTCAGGGCTCAGGTTAGGCGC
TCCACCAAGATTGGAACCGCGTCTCTTCACTCGAGCACTCTCCAAACGTG
ATGGTAAATATATCAGGTATCTTCCCGCGCCATCCCCTATCCCAATCTGC
TGGACCCCCTCTCCGCCCACCACCGTTTTTCTTGTTTTAATGCTCTAAAT
GTTTGAAGGCGAGTGGCTGATGGTGCCAGTGCGGAAGAGGACGCTGATTG
GTTAGGTGGAACAAGCGAGTTTGGGGCCGGGGGGAGTGGGAGCGGTGACA
GCGGCGGCGGCAGCGGCGGCGGTGTAGGCAGCTCGTTAACGGCGTCCGCG
GAGGCGTGGGAGCTGGTGGTGTGCCAGGAGCTTGCCGTGGAGGGAAAGTA
TACCTTCAAGGCGAGTGGATGCAATTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11465:599..4376-

>mRNA_Ecto-sp8_S_contig11465.1831.1 ID=mRNA_Ecto-sp8_S_contig11465.1831.1|Name=mRNA_Ecto-sp8_S_contig11465.1831.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1185bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11465:599..4376- (Ectocarpus species8 EcLAC_412)
ATGCCCGCGACAAGCACCATCCCGCTCGATGACTTGCCGGGAGCGCCGGA
ACATGCCGATGTCCTGTTCGCCTTTTCTGTGCACGGCTTGGGAGGTTCTA
AGATCGCAGCGAACAAAAGCCTGAGGGGCATGATGGCTTCCGAAGTCGCG
CCGCCGCCGCAGCAGCAGCAGCAGCAGAAGGAGGCGCCCAAGAAGGGCTG
GCTCTCCTCCCTCAACACCGCCGTGGTCGGCGAAAGACAAGAGGTTGTCT
CACTGATGCTGACTCTCTCAGCGAGCGAGGAAACATTAACAACGCCGGCC
GCCGGAGGGGCGGGGATGCCAGGGATGCCCGCCCCGCCCGCCCTGGCTCG
CCGATCGACGGGGGACCGGCCCCTCTCCGTAGCGCCGGCGAGATCGGCGA
TGCTGCTCTCCGGCGGCAGACCCAACACCCCCACCGTCTTTTACCAGTCG
GAGCACAGGACCTTCGGGCAGCAACCCGTGTCGCCCGCCGCCGTTGGCCG
ATCGACATCCCCGTCCGGGTTTCCAGACGGCGGAGGGGAGGGTGGGGTGG
GGGGAGGAAAGCAGCGGCCGATGACCATGTCGGAGGAGGGGATTGTGCAC
TTTTCGATCCCCGCGAGGGTTCCGGGGAACAGGGGTTCCGGGACGAACGG
AGGCGGGGACGGGGGGGGGGGTGAAGAAACGATGGTTGTTTTTGTGGTGG
AGCTGTGGCAGGTCGTCAACCGTTCCCGTCGGGCCCTGTGGGGATCGCTA
ACGCTGTCCTGGGATAACCTGATGGCCGTGCCAGCGGGCCCGAGAAAGTG
CGGCGTGTTTAGCGGGCTTCAGTCAGAGCGGTACCCGACAGCCTTCCTTG
CGGTCAGGCGGGTTTATCCGCCTCTCCCCCGGCCGCTGTCCATGTCCCCA
CGGGGGGTGTCTAACCCGGCCGTCGAGAAGTTCAACCCCATGGTGACCTT
CTTCACTGCCATCAGGCGAGTGGCTGATGGTGCCAGTGCGGAAGAGGACG
CTGATTGGTTAGGTGGAACAAGCGAGTTTGGGGCCGGGGGGAGTGGGAGC
GGTGACAGCGGCGGCGGCAGCGGCGGCGGTGTAGGCAGCTCGTTAACGGC
GTCCGCGGAGGCGTGGGAGCTGGTGGTGTGCCAGGAGCTTGCCGTGGAGG
GAAAGTATACCTTCAAGGCGAGTGGATGCAATTAA
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