mRNA_Ecto-sp8_S_contig11407.1777.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11407.1777.1
Unique NamemRNA_Ecto-sp8_S_contig11407.1777.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11407.1777.1 vs. uniprot
Match: D8LKW5_ECTSI (Chorismate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKW5_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 4.170e-56
Identity = 95/100 (95.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:    1 TIACHQAFKPTSTIGQLQNTVTRGGEETTMRGKGRHDPCVLPRAAPMVEAMVALVLADVLMQQKAQCELFPADALDTLETNPLGKKLSGAGVSAASVNTP 300
            TI    AFKPTSTIGQLQNTVTRGGEETTMRGKGRHDPCVLPRAAPMVEAMVALVLADVLMQQKAQCELFPADAL+TLETNPLGKKLSGAGVSAASVNTP
Sbjct:  338 TIVVRVAFKPTSTIGQLQNTVTRGGEETTMRGKGRHDPCVLPRAAPMVEAMVALVLADVLMQQKAQCELFPADALETLETNPLGKKLSGAGVSAASVNTP 437
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BLAST of mRNA_Ecto-sp8_S_contig11407.1777.1 vs. uniprot
Match: A0A835Z9B0_9STRA (Chorismate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B0_9STRA)

HSP 1 Score: 137 bits (346), Expect = 4.210e-37
Identity = 69/93 (74.19%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 TIACHQAFKPTSTIGQLQNTVTRGGEETTMRGKGRHDPCVLPRAAPMVEAMVALVLADVLMQQKAQCELFPADALDTLETNPLGKKLSGAGVS 279
            TI    AFKPTSTIGQ Q TVTR G ET MRGKGRHDPCVLPRA PMVEAM+ALVLAD LM   AQC+LFPA ALD+++ NPLGKKL G G S
Sbjct:  297 TIIIRVAFKPTSTIGQEQETVTREGVETKMRGKGRHDPCVLPRAVPMVEAMMALVLADALMAHAAQCQLFPAGALDSVDANPLGKKLEGLGAS 389
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BLAST of mRNA_Ecto-sp8_S_contig11407.1777.1 vs. uniprot
Match: A0A7S0FMT2_9STRA (Chorismate synthase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMT2_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.380e-31
Identity = 59/83 (71.08%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    4 IACHQAFKPTSTIGQLQNTVTRGGEETTMRGKGRHDPCVLPRAAPMVEAMVALVLADVLMQQKAQCELFPADALDTLETNPLG 252
            I  H AFKPTSTIGQ QNTVTR G+E  +RGKGRHDPCVLPRA PMVEAMVAL L D LM Q+AQCELFP +A      NP+G
Sbjct:  106 IVVHVAFKPTSTIGQAQNTVTRDGQEVELRGKGRHDPCVLPRAVPMVEAMVALTLVDHLMMQQAQCELFPNEAAVEDLPNPMG 188
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11407.1777.1 vs. uniprot
Match: A0A7S2XR93_9STRA (Chorismate synthase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XR93_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.480e-31
Identity = 57/83 (68.67%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:    4 IACHQAFKPTSTIGQLQNTVTRGGEETTMRGKGRHDPCVLPRAAPMVEAMVALVLADVLMQQKAQCELFPADALDTLETNPLG 252
            +  H AFKPTSTIGQ+Q TVTR G E  +RGKGRHDPCVLPRA PMVEAM+ALVL D LM Q+AQCELFP +A    + NP+G
Sbjct:  166 VVIHVAFKPTSTIGQVQKTVTRDGREVELRGKGRHDPCVLPRAVPMVEAMMALVLVDALMMQQAQCELFPNEASSEEKPNPMG 248
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BLAST of mRNA_Ecto-sp8_S_contig11407.1777.1 vs. uniprot
Match: A0A7S2B041_9STRA (Chorismate synthase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B041_9STRA)

HSP 1 Score: 122 bits (306), Expect = 5.760e-31
Identity = 62/88 (70.45%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 TIACHQAFKPTSTIGQLQNTVTRGGEETTMRGKGRHDPCVLPRAAPMVEAMVALVLADVLMQQKAQCELFPADALDTLETNPLGKKLS 264
            TI    AFKPTSTIGQLQ TVTRGGEETTMRGKGRHDPCVLPRA PMVE+MVAL L D LM   AQC+L P    +    NPLGK L+
Sbjct:  344 TIILRVAFKPTSTIGQLQETVTRGGEETTMRGKGRHDPCVLPRAVPMVESMVALTLVDHLMMHHAQCQLLPLPMENEEAPNPLGKALN 431
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11407.1777.1 vs. uniprot
Match: A0A448ZC27_9STRA (Chorismate synthase n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A448ZC27_9STRA)

HSP 1 Score: 122 bits (305), Expect = 8.120e-31
Identity = 60/90 (66.67%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    4 IACHQAFKPTSTIGQLQNTVTRGGEETTMRGKGRHDPCVLPRAAPMVEAMVALVLADVLMQQKAQCELFPADALDTLETNPLGKKLSGAG 273
            I  H AFKPTSTIGQ Q TVTR G+E  +RGKGRHDPCVLPRA PMVEAMVAL L D LM QKAQCEL P +A    + NP+G  + G G
Sbjct:  328 IVVHVAFKPTSTIGQAQATVTRDGKEVELRGKGRHDPCVLPRAIPMVEAMVALTLTDALMMQKAQCELLPNEAPFESQPNPMGSTVEGRG 417
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BLAST of mRNA_Ecto-sp8_S_contig11407.1777.1 vs. uniprot
Match: A0A7S0SX69_9STRA (Chorismate synthase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SX69_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.190e-30
Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:   19 AFKPTSTIGQLQNTVTRGGEETTMRGKGRHDPCVLPRAAPMVEAMVALVLADVLMQQKAQCELFPADAL-----DTLETNPLGKKLS 264
            AFKPTSTIG+ QNTVTR G  TT+RGKGRHDPCVLPRA PMVEAMVALVL D LMQQ AQCELFP D       +++  N LGKKL+
Sbjct:  326 AFKPTSTIGREQNTVTREGNSTTLRGKGRHDPCVLPRAVPMVEAMVALVLLDALMQQNAQCELFPRDKFVDSDSNSISENILGKKLA 412
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BLAST of mRNA_Ecto-sp8_S_contig11407.1777.1 vs. uniprot
Match: A0A7S4N0V5_9STRA (Chorismate synthase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N0V5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.230e-30
Identity = 55/83 (66.27%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    4 IACHQAFKPTSTIGQLQNTVTRGGEETTMRGKGRHDPCVLPRAAPMVEAMVALVLADVLMQQKAQCELFPADALDTLETNPLG 252
            +  H AFKPTSTIGQ Q TVTR G+E  +RGKGRHDPCVLPRA PMVEAM+AL + D LM Q+AQCELFP +A    + NP+G
Sbjct:   46 VVIHVAFKPTSTIGQAQMTVTRDGQEVELRGKGRHDPCVLPRAVPMVEAMMALTVVDHLMMQQAQCELFPNEAPMDEQPNPMG 128
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11407.1777.1 vs. uniprot
Match: A0A7S2S3K3_9STRA (Chorismate synthase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3K3_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.630e-30
Identity = 66/111 (59.46%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:    1 TIACHQAFKPTSTIGQLQNTVTRGGEETTMRGKGRHDPCVLPRAAPMVEAMVALVLADVLMQQKAQC----ELFPADALDTLETNPLGKKLS-------GAGVSAASVNTP 300
            TI    AFKPTSTIGQLQ+TVTRGGEETT+RGKGRHDPCVLPRA PMV+AMVAL L D LMQQ+AQC    E  P         NPLG + S       G G  A + + P
Sbjct:  182 TIVLRVAFKPTSTIGQLQDTVTRGGEETTLRGKGRHDPCVLPRACPMVDAMVALTLVDALMQQEAQCGLLREQLPLAYGGQAAANPLGSQPSPVPVTYNGGGGDAGAASPP 292
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11407.1777.1 vs. uniprot
Match: A0A7S3P6R5_9STRA (Chorismate synthase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6R5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.390e-30
Identity = 57/83 (68.67%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    4 IACHQAFKPTSTIGQLQNTVTRGGEETTMRGKGRHDPCVLPRAAPMVEAMVALVLADVLMQQKAQCELFPADALDTLETNPLG 252
            I  H AFKPTSTIGQ+Q TVTR G+E  +RGKGRHDPCVLPRA PMVEAMVAL L D LM Q+AQCELF  +A      NP+G
Sbjct:   71 IVVHVAFKPTSTIGQVQKTVTRDGKEVELRGKGRHDPCVLPRAVPMVEAMVALTLVDHLMMQQAQCELFEIEAPLADRPNPMG 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11407.1777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKW5_ECTSI4.170e-5695.00Chorismate synthase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835Z9B0_9STRA4.210e-3774.19Chorismate synthase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S0FMT2_9STRA1.380e-3171.08Chorismate synthase n=1 Tax=Minutocellus polymorph... [more]
A0A7S2XR93_9STRA1.480e-3168.67Chorismate synthase n=1 Tax=Attheya septentrionali... [more]
A0A7S2B041_9STRA5.760e-3170.45Chorismate synthase n=2 Tax=Dictyocha speculum Tax... [more]
A0A448ZC27_9STRA8.120e-3166.67Chorismate synthase n=3 Tax=Bacillariaceae TaxID=3... [more]
A0A7S0SX69_9STRA1.190e-3071.26Chorismate synthase n=1 Tax=Chromulina nebulosa Ta... [more]
A0A7S4N0V5_9STRA1.230e-3066.27Chorismate synthase n=1 Tax=Odontella aurita TaxID... [more]
A0A7S2S3K3_9STRA1.630e-3059.46Chorismate synthase (Fragment) n=1 Tax=Rhizochromu... [more]
A0A7S3P6R5_9STRA2.390e-3068.67Chorismate synthase n=1 Tax=Amphora coffeiformis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11407contigEcto-sp8_S_contig11407:5444..6171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score189.1
Seed ortholog evalue1e-45
Seed eggNOG ortholog2880.D8LKW5
Model size303
KEGG rclassRC00586
KEGG koko:K01736
KEGG ReactionR01714
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009507,GO:0009536,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.chorismate synthase activity
EggNOG OGsCOG0082@1,KOG4492@2759
EC4.2.3.5
Cds size303
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143215.7458045-CDS-Ecto-sp8_S_contig11407:5443..55991681143215.7458045-CDS-Ecto-sp8_S_contig11407:5443..5599Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11407 5444..5599 -
1681143215.7571352-CDS-Ecto-sp8_S_contig11407:6024..61711681143215.7571352-CDS-Ecto-sp8_S_contig11407:6024..6171Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11407 6025..6171 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11407.1777.1prot_Ecto-sp8_S_contig11407.1777.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11407 5444..6171 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11407.1777.1

>prot_Ecto-sp8_S_contig11407.1777.1 ID=prot_Ecto-sp8_S_contig11407.1777.1|Name=mRNA_Ecto-sp8_S_contig11407.1777.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=101bp
TIACHQAFKPTSTIGQLQNTVTRGGEETTMRGKGRHDPCVLPRAAPMVEA
MVALVLADVLMQQKAQCELFPADALDTLETNPLGKKLSGAGVSAASVNTP
*
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mRNA from alignment at Ecto-sp8_S_contig11407:5444..6171-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11407.1777.1 ID=mRNA_Ecto-sp8_S_contig11407.1777.1|Name=mRNA_Ecto-sp8_S_contig11407.1777.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=728bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11407:5444..6171- (Ectocarpus species8 EcLAC_412)
ACAATCGCTTGTCATCAGGCATTCAAGCCGACGTCCACCATCGGGCAGCT
TCAAAATACGGTCACGAGGGGGGGAGAGGAGACGACCATGAGGGGAAAGG
GTCGCCATGACCCCTGCGTTCTTCCTCGGGCAGCTCCCATGGTCGAGGTA
AGTTCGGCGGTGTCGCGCTTCGAATCGACGTGCACTGTTGAAACAAGTTA
TTTTCGTGTCTCAACTCTGTTGACCTCCACCAGTCTCATCACCTTGGAGG
AATTCCAACGCGGTCTCGAGAACCCCACGGGTTTCAAGTGTCTCAGCTGT
TGGCCATCCTCGGTAGGTCGTGGATTTTGCGGACTCGCGCTCCCTCCTAC
CCCATACCCTTCTGTTCAAGGTGCCATCACGGTGACGCCGCGCAATGTAC
TTGCACCTGCACTCTTGTACTTGCACCGTGCTCACTTGTATTTCTCATGG
CAATCCACCGTCCGCACTCCCGAATAATATGCCTTGCCCCGAAAGCTGCC
AGCATGAAGTTGTTTAAGATCGGCCGTATCCTTACCGTCCCCTTGTTGGT
ATGTCCTTGGTGTGGTTCACAGGCGATGGTTGCCTTAGTCCTCGCGGACG
TCTTGATGCAGCAGAAGGCGCAGTGCGAGCTGTTCCCAGCTGACGCGTTG
GATACTCTGGAGACGAACCCTTTGGGGAAGAAATTGTCGGGGGCGGGGGT
ATCTGCTGCTTCGGTAAACACGCCATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11407:5444..6171-

>mRNA_Ecto-sp8_S_contig11407.1777.1 ID=mRNA_Ecto-sp8_S_contig11407.1777.1|Name=mRNA_Ecto-sp8_S_contig11407.1777.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11407:5444..6171- (Ectocarpus species8 EcLAC_412)
ACAATCGCTTGTCATCAGGCATTCAAGCCGACGTCCACCATCGGGCAGCT
TCAAAATACGGTCACGAGGGGGGGAGAGGAGACGACCATGAGGGGAAAGG
GTCGCCATGACCCCTGCGTTCTTCCTCGGGCAGCTCCCATGGTCGAGGCG
ATGGTTGCCTTAGTCCTCGCGGACGTCTTGATGCAGCAGAAGGCGCAGTG
CGAGCTGTTCCCAGCTGACGCGTTGGATACTCTGGAGACGAACCCTTTGG
GGAAGAAATTGTCGGGGGCGGGGGTATCTGCTGCTTCGGTAAACACGCCA
TGA
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