mRNA_Ecto-sp8_S_contig11403.1772.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11403.1772.1
Unique NamemRNA_Ecto-sp8_S_contig11403.1772.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11403.1772.1 vs. uniprot
Match: D8LHR1_ECTSI (LTD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR1_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 1.550e-38
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:  217 DLGVREAEDDGDGSPFSTAWKAVWMTLMICCAARQLLSCIQALISMSSLSSGVIADAAGKDMQRRHPRSRRSSGGXXXXRGRSRSRAR 480
            DLGVREAEDDGDGSPFSTAWKAVWMTLM+CCAARQLLSCIQALISMSSLSSGVIADAAGKDMQRRHPRSRRSSGGXXX RGRSRSRAR
Sbjct:  432 DLGVREAEDDGDGSPFSTAWKAVWMTLMVCCAARQLLSCIQALISMSSLSSGVIADAAGKDMQRRHPRSRRSSGGXXXSRGRSRSRAR 519
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BLAST of mRNA_Ecto-sp8_S_contig11403.1772.1 vs. uniprot
Match: A0A6H5K6Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y7_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.000e-18
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 2 
Query:  995 LSGLVLIVVHAVVVRPLTSHPYKAWIDHAGFSPDQALTSPSAKRHEVFGESHGGCAAS 1168
            + G VLIVVHAVVVRPLTSHPY+A  +HAGFS DQALTSPSAKR E+FGESH GCAAS
Sbjct:  182 VGGGVLIVVHAVVVRPLTSHPYEAGTEHAGFSADQALTSPSAKRREIFGESHEGCAAS 239
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BLAST of mRNA_Ecto-sp8_S_contig11403.1772.1 vs. uniprot
Match: A0A6H5J7U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.040e-8
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:  998 SGLVLIVVHAVVVRPLTSHPYKAWIDHAGFSPDQALTSPSAKRHE 1132
            +G VLIVVHAVV+RPLTSHP KA  +HAGFS DQALTSPSAKR E
Sbjct:  382 AGGVLIVVHAVVMRPLTSHPCKAGTEHAGFSLDQALTSPSAKRRE 426
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BLAST of mRNA_Ecto-sp8_S_contig11403.1772.1 vs. uniprot
Match: A0A6H5KAH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAH1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 9.000e-7
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 2 
Query: 1076 HAGFSPDQALTSPSAKRHEVFGESHGGCAAS 1168
            HAGFSPDQALTS SAKR EVFGESH GCAAS
Sbjct:  105 HAGFSPDQALTSASAKRREVFGESHEGCAAS 135
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BLAST of mRNA_Ecto-sp8_S_contig11403.1772.1 vs. uniprot
Match: A0A6H5K5P3_9PHAE (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P3_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.900e-6
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 2 
Query: 1073 DHAGFSPDQALTSPSAKRHEVFGESHGGCAAS 1168
            +HAGFSPDQALTSPSAKR E+FGESH GCAAS
Sbjct:  666 EHAGFSPDQALTSPSAKRREIFGESHEGCAAS 697
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11403.1772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LHR1_ECTSI1.550e-3897.73LTD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5K6Y7_9PHAE4.000e-1881.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7U0_9PHAE1.040e-880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAH1_9PHAE9.000e-790.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5P3_9PHAE1.900e-687.50Importin N-terminal domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11403contigEcto-sp8_S_contig11403:286..3712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score159.8
Seed ortholog evalue8.3e-37
Seed eggNOG ortholog2880.D8LHR1
Model size2140
Hectar predicted targeting categorymitochondrion
Exons3
EggNOG OGs28XRH@1,2R4IT@2759
Cds size387
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143215.3743405-UTR-Ecto-sp8_S_contig11403:285..3811681143215.3743405-UTR-Ecto-sp8_S_contig11403:285..381Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11403 286..381 +
1681143215.4179003-UTR-Ecto-sp8_S_contig11403:2055..37121681143215.4179003-UTR-Ecto-sp8_S_contig11403:2055..3712Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11403 2056..3712 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143215.3851411-CDS-Ecto-sp8_S_contig11403:381..4731681143215.3851411-CDS-Ecto-sp8_S_contig11403:381..473Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11403 382..473 +
1681143215.3960264-CDS-Ecto-sp8_S_contig11403:1090..12411681143215.3960264-CDS-Ecto-sp8_S_contig11403:1090..1241Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11403 1091..1241 +
1681143215.407025-CDS-Ecto-sp8_S_contig11403:1911..20551681143215.407025-CDS-Ecto-sp8_S_contig11403:1911..2055Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11403 1912..2055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11403.1772.1prot_Ecto-sp8_S_contig11403.1772.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11403 382..2055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11403.1772.1

>prot_Ecto-sp8_S_contig11403.1772.1 ID=prot_Ecto-sp8_S_contig11403.1772.1|Name=mRNA_Ecto-sp8_S_contig11403.1772.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=129bp
MKKSLRFSFLAKRPRPPRRMEACLAASNRTGTCAPTQIRIDLGVREAEDD
GDGSPFSTAWKAVWMTLMICCAARQLLSCIQALISMSSLSSGVIADAAGK
DMQRRHPRSRRSSGGGGSSRGRSRSRAR*
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mRNA from alignment at Ecto-sp8_S_contig11403:286..3712+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11403.1772.1 ID=mRNA_Ecto-sp8_S_contig11403.1772.1|Name=mRNA_Ecto-sp8_S_contig11403.1772.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3427bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11403:286..3712+ (Ectocarpus species8 EcLAC_412)
CCGGCGACTTCCTCTCGAGCTTGTTCACCGAGCTCCTGTCCTCCTTCTCC
CCTTCCTCCTCCTCCTCCTCTTCCTTCTTGTCTTCCGACATCGCCGATGA
AGAAGTCGCTTCGATTCTCATTTCTGGCGAAGAGACCACGACCGCCGCGG
AGGATGGAGGCGTGTTTGGCGGCTTCGAACCGAACAGGTGTGCGCTCGTG
AGCCCAGTTTTTTTTTCGCCTCCTGCTGTTTGTTGGCGCACATGTATCGA
GAAACAAGCGTTTCACGCTGTATGTACTATTCAAGCTTTCGAGGGTACCG
GGGTGGTAAGCGTTGACGTCGTGAACAGATGCCCTGTCCCACCGGCAGCT
GCTCGCACCGATGTCGTCACTGCAGCTTGCCTGTGGGACAAAGCCTTGCC
CAGGAGAAGCAAAACAGAAGGTTCGGCGGGACATATCTTGATTTGGGGCG
AGCGCTCGCACCATGAAGGCATTATCTCAAACCCAAAAAATGAAAAGCGT
ATCAACGCATGCGCGCGCGTATGCTCGAGAGAGCTGTAAACATCGCGTTT
TTGTGCTGCAAGATGCGGGTGGTAGGTGGATACCGTGAAGGACAATCCAA
CACTTGCGTCTGGTTGTTGTTGTTGCTGTTAATGCTGCTGCTGCTGCTGC
TGTCTTGGCATCAAAACCGCCGTTCCGATCTAGTTGGCAGATTTCAGGAA
TGCCTTCCTTGGGTCTTTTTCTGAGAATCAAGACCCGGCGGACGTGCGGG
GTATGTTATTCTAAATATATTTGAGTTTTGTGAATCGTTCGGCCCCGTAA
CAAAAAACGTGTGCACCAACACAAATCAGGATCGACCTAGGGGTTCGAGA
GGCGGAAGATGACGGGGACGGGTCACCGTTTTCTACGGCGTGGAAAGCGG
TGTGGATGACGCTGATGATCTGCTGTGCCGCTCGGCAGCTACTGAGTTGC
ATTCAAGTAAGGAAATGGTTGTTGTGGTTGTTTTTGTTGTTGTTCTTTCT
ATTTTTCACCACAACCTTCGCTCTAGCCCCCACCCAGCACATCACCTTCC
CTACTCTGTGTAGGCAAAGAAAGGAATATCCGTTGTCACAAACCAAAACC
CAAAACATAACTTGAAGGCGAAAGGAGATCGAAGCAAGTCCTAATACTCG
CGACGAAGCTGCAGCACTTCCTAGAACCAACGACCCGCAAATACGTGAGG
GGAAAGGACGGCCCCAAACATTGAAGCTGGGCCCCAACACCCCCATTACG
CGGAAGCTGATATTCGGACAAGGCAAAGCAACGATGGAGTACCTTGGCCC
ACCTTGCCGCAATGCACGACCCCATATCTGTAGCCCCTACCGCCATTCTC
CAACCAATCGACTGTTTCTTCTTCGATGTTGGTTCGATATCCGCCCCCGG
TGTTTTTCCCGTGCGAGTGCAATGTTTCACGCGGTTTTCTCTGCCCGTTC
TTCTTGAACGCCAGTCTTGACGCTATCCCCCCGGGCTCCACAAGGCGGCA
GCGTTGTTTGCGGCGCATTCCCTGGCTTGCGTTGTTCCCTCGCTTGACGT
TTCAACGCCGCTGCCCCCACCTCTTGCTTGGCCTCGAAAACGCGTCGTCC
TCTTCGTTTGTCTACCAAAACTACAGGCTCTGATTTCGATGTCCTCGCTA
TCGTCGGGCGTGATCGCGGACGCGGCCGGCAAGGACATGCAGCGCCGCCA
CCCCCGCTCGAGGCGCAGCAGCGGCGGTGGCGGGAGCTCGCGGGGGCGGA
GCCGATCTCGCGCCCGATGATTTGTCGGGCAACCCCCCGGGGGCTGGCGT
GTCGTCTTGCTCTGCTCTCCGCCCTTGTGGCTTGTGTTTTCCACGCGATG
TGTGTTTCGGGAGGCTAGTTTCTGGGCGAATGGGGGTCTGGTATAGGGAG
AACAGTGGGGGGTGTATGATACAAGGCCGGGCGTGCATTGCAGACAGAAG
GGGGTTAGCTTTTTTCCTGGTATTCAACGTATCTCATACCACCCGTGGTC
GCGTGCGCTTACTTTTATTTTAGCAAGGCTCCGCGGTTTGGGTGTGGGAT
ACTTGGCCAGGTGTTCAGGTGTAATAGAGAGGTGGGTAGGGTAAGGGCGG
GAATAGTTGTCATCTGGATTTGTCCTCTCTTTTGCGCGGACTGTTGTTTC
CAACGCGACTCCTGGCGGCGGGTTTTTGCCCAAACGTTTCGCGAGTTTGT
TTTCTTCTGCTCGTCTACGGCGGTAGGAAGCCCGTGTGCGGTAGGTCCCC
CTGTCGTGTTGTTGATTTGCTGGCTTGTGTATTATCGGGGCTTGTACTCA
TAGTCGTGCATGCCGTAGTCGTTAGACCATTGACTTCGCATCCCTACAAA
GCCTGGATAGACCACGCTGGGTTCTCACCGGACCAGGCTCTCACATCACC
AAGTGCGAAGCGGCATGAGGTATTCGGCGAGTCGCATGGAGGGTGCGCTG
CATCTCGCTAAGGGTGTGTGTCATCTCGCTAAGGGTGTGTGTCTTGTGGG
GGGTTGTTTCTTGTTTTTCTTTGTCGGCGTTGCGTGTAATCACTTCTGGG
CAGGGCAGGCTTGGAGGACTCTTTCACCGGAAGGGGGGGGTAAGACAAGG
TGACGAAAAGGGGCGGTGGGGAGACTAAGACTAAGAAACGACCCAATACT
GACAGAAAGCGGGGGAGGGGAGAGTTGTATTGGTCTCCCGAGAACAACGA
CGGGGGTGAGACGTGGTTGCAGGCAGACGATGTCCCTAGGGTATGCCGGA
GGGTGTATGGTGACGAACCACGGGCAAATTTCGTGTAAGTGCAGCAGCAG
CAGCAGCAGCAGCAGACGGACCCTTCCCCGTACACCGACCACGAGTCCCA
CTGGGAGCGATCTTGGAGATGTTCGGTTGTGGGGGTGGTGTTATTGGAAG
TCGCGGGACCCCGGGTGTGGTAGCAGTACACAAAATTGCTTGCAATGACG
CCTTTTTCATATATGCGTACAAAATGGTTCATGAGTGTGTTGGTGGCGTG
CTTGTCGCTGGTTTGGCGGCGAAAAGTGCGTCTTGCAGATGAGATCGTGT
TGTTGCCGAAAGGTTCGAAAAAACGAAGTAGCAAAGTTCAGAGCGTCCAA
CAACTGTATACACCTCGGTAGGTTCGCGTGATCTGGTTGTTTTTCGTCGT
TTTTTCTTGGTTGTTTCCGTCGTTTTCTTGGATGCCTTTGCTGTTCCTGT
TGTTGGTTCGTTTGGTGGTTTGTGTTTTTGAGTCGAAACGAACGAGCGAC
GGAGGTTCGACAATTTAAAAATCTAATGGTAACGGTATATCGATTTTTTT
GTACTCTCAAAAGATGAGTATTAAACGTAGTAGGGACATGAAGAACCGCC
CACCCATCAGCGAGTTTGTTCCTGTTTCCTCTGTGGAAATCAACACAAAT
TAACTTATATCCGTAGGATAGCCGGCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11403:286..3712+

>mRNA_Ecto-sp8_S_contig11403.1772.1 ID=mRNA_Ecto-sp8_S_contig11403.1772.1|Name=mRNA_Ecto-sp8_S_contig11403.1772.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11403:286..3712+ (Ectocarpus species8 EcLAC_412)
ATGAAGAAGTCGCTTCGATTCTCATTTCTGGCGAAGAGACCACGACCGCC
GCGGAGGATGGAGGCGTGTTTGGCGGCTTCGAACCGAACAGGAACGTGTG
CACCAACACAAATCAGGATCGACCTAGGGGTTCGAGAGGCGGAAGATGAC
GGGGACGGGTCACCGTTTTCTACGGCGTGGAAAGCGGTGTGGATGACGCT
GATGATCTGCTGTGCCGCTCGGCAGCTACTGAGTTGCATTCAAGCTCTGA
TTTCGATGTCCTCGCTATCGTCGGGCGTGATCGCGGACGCGGCCGGCAAG
GACATGCAGCGCCGCCACCCCCGCTCGAGGCGCAGCAGCGGCGGTGGCGG
GAGCTCGCGGGGGCGGAGCCGATCTCGCGCCCGATGA
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