mRNA_Ecto-sp8_S_contig11400.1769.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11400.1769.1
Unique NamemRNA_Ecto-sp8_S_contig11400.1769.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11400.1769.1 vs. uniprot
Match: D7FUV4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV4_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 6.270e-55
Identity = 97/102 (95.10%), Postives = 102/102 (100.00%), Query Frame = 3 
Query:  327 DEQSVAIGASAKVEELEAKVLEGELQRRKMHNLIQELRGNVRVFARVRPFLPSDGVGPEEMPAVVGKGDGVGCVLSKRLIGDNGKELPPEAQSFSFDKCFPP 632
            ++++VAIGASAKVEELEAKVLEGELQRRKMHNLIQELRGNVRVFARVRPFLPSDGVGPEE+PAVVGKGDGVGCVLSKRLIGDNGKELPPEAQSFSFDKCFPP
Sbjct:  763 EKENVAIGASAKVEELEAKVLEGELQRRKMHNLIQELRGNVRVFARVRPFLPSDGVGPEEVPAVVGKGDGVGCVLSKRLIGDNGKELPPEAQSFSFDKCFPP 864
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BLAST of mRNA_Ecto-sp8_S_contig11400.1769.1 vs. uniprot
Match: A0A6H5JJH6_9PHAE (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH6_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.130e-54
Identity = 97/102 (95.10%), Postives = 102/102 (100.00%), Query Frame = 3 
Query:  327 DEQSVAIGASAKVEELEAKVLEGELQRRKMHNLIQELRGNVRVFARVRPFLPSDGVGPEEMPAVVGKGDGVGCVLSKRLIGDNGKELPPEAQSFSFDKCFPP 632
            ++++VAIGASAKVEELEAKVLEGELQRRKMHNLIQELRGNVRVFARVRPFLPSDGVGPEE+PAVVGKGDGVGCVLSKRLIGDNGKELPPEAQSFSFDKCFPP
Sbjct:  891 EKENVAIGASAKVEELEAKVLEGELQRRKMHNLIQELRGNVRVFARVRPFLPSDGVGPEEVPAVVGKGDGVGCVLSKRLIGDNGKELPPEAQSFSFDKCFPP 992
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BLAST of mRNA_Ecto-sp8_S_contig11400.1769.1 vs. uniprot
Match: A0A835YR54_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR54_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.400e-21
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 3 
Query:  357 AKVEELEAKVLEGELQRRKMHNLIQELRGNVRVFARVRPFLPSDGVGPEEMPAVVGKGDGVGCVLSKRLI---GDNGKELPPEAQSFSFDKCFPP 632
            A V EL+ KV +GE+QRRK+HNL+QELRGNVRV+ARVRPFLP D       PA+  +GDGV CV+ KR     GD G     +  +F+FD+ FPP
Sbjct:  119 AAVAELDGKVRDGEVQRRKLHNLVQELRGNVRVYARVRPFLPDDQAPAGAAPAISARGDGVSCVIVKRDAQRGGDGGSGAVVKTDTFAFDRVFPP 213
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BLAST of mRNA_Ecto-sp8_S_contig11400.1769.1 vs. uniprot
Match: A0A7S4JBW0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JBW0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.110e-18
Identity = 52/98 (53.06%), Postives = 65/98 (66.33%), Query Frame = 3 
Query:  339 VAIGASAKVEELEAKVLEGELQRRKMHNLIQELRGNVRVFARVRPFLPSDGVGPEEMPAVVGKGDGVGCVLSKRLIGDNGKELPPEAQSFSFDKCFPP 632
            V++  + KV  LEA + EG+ +RR+MHNLIQELRGNVRVFARVRPFLP+DGV  +  P VV K +       K    D+G+E      SFSFD+ FPP
Sbjct:  921 VSVAGAEKVAALEATIREGQAERRRMHNLIQELRGNVRVFARVRPFLPNDGVSDDAEPFVVPKSES----SLKLKKSDDGQEY-----SFSFDRVFPP 1009
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BLAST of mRNA_Ecto-sp8_S_contig11400.1769.1 vs. uniprot
Match: A0A7S4VFE5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VFE5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.580e-17
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 3 
Query:  330 EQSVAIGASA--KVEELEAKVLEGELQRRKMHNLIQELRGNVRVFARVRPFLPSDGVGPEEMPAVVGKGDGVGCVLSKRLIGDNGKELPPEAQSFSFDKCFPP 632
            E+S+++G +   +V  LEA++ EG+ +RR+MHN+IQELRGNVRVFARVRPFLP DGVG +  P +  K +    VLSK      G E P     F+FD+ FPP
Sbjct:  370 EKSMSLGQATAEQVAALEAQIREGQAERRRMHNVIQELRGNVRVFARVRPFLPGDGVGGDAQPCITPKNE-TSLVLSK------GDEYP-----FTFDRVFPP 460
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BLAST of mRNA_Ecto-sp8_S_contig11400.1769.1 vs. uniprot
Match: A0A7S4V4X5_9STRA (Kinesin-like protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V4X5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.800e-17
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 3 
Query:  330 EQSVAIGASA--KVEELEAKVLEGELQRRKMHNLIQELRGNVRVFARVRPFLPSDGVGPEEMPAVVGKGDGVGCVLSKRLIGDNGKELPPEAQSFSFDKCFPP 632
            E+S+++G +   +V  LEA++ EG+ +RR+MHN+IQELRGNVRVFARVRPFLP DGVG +  P +  K +    VLSK      G E P     F+FD+ FPP
Sbjct:  370 EKSMSLGQATAEQVAALEAQIREGQAERRRMHNVIQELRGNVRVFARVRPFLPGDGVGGDAQPCITPKNE-TSLVLSK------GDEYP-----FTFDRVFPP 460
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BLAST of mRNA_Ecto-sp8_S_contig11400.1769.1 vs. uniprot
Match: A0A7R9W6B5_9STRA (Kinesin-like protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6B5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.810e-16
Identity = 47/88 (53.41%), Postives = 57/88 (64.77%), Query Frame = 3 
Query:  369 ELEAKVLEGELQRRKMHNLIQELRGNVRVFARVRPFLPSDGVGPEEMPAVVGKGDGVGCVLSKRLIGDNGKELPPEAQSFSFDKCFPP 632
            + EA++ EG  +RRKMHN+IQELRGNVRVFARVRPFLP D  G  E P V+ K D     L  +L G+  K+      SFSFD+ F P
Sbjct:   37 DFEAQLREGAAERRKMHNVIQELRGNVRVFARVRPFLPGDNTGDNEQPCVIPKSD---TALKLKLNGEEKKDY-----SFSFDRVFNP 116
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BLAST of mRNA_Ecto-sp8_S_contig11400.1769.1 vs. uniprot
Match: A0A4D9D7S4_9STRA (Kinesin motor domain-containing protein n=5 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7S4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.010e-16
Identity = 48/90 (53.33%), Postives = 57/90 (63.33%), Query Frame = 3 
Query:  363 VEELEAKVLEGELQRRKMHNLIQELRGNVRVFARVRPFLPSDGVGPEEMPAVVGKGDGVGCVLSKRLIGDNGKELPPEAQSFSFDKCFPP 632
            V +LE  V EGELQRRKMHNLIQELRGNVRV+ARVRPFLPSD V       +          + K+    +G  L  E+  F+FD+CFPP
Sbjct:  695 VSDLEKAVQEGELQRRKMHNLIQELRGNVRVYARVRPFLPSDQVDASAQHCINVSAHDDSLAILKKDGSSDGNVL--ESHGFTFDRCFPP 782
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BLAST of mRNA_Ecto-sp8_S_contig11400.1769.1 vs. uniprot
Match: A0A7S3Q435_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q435_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.480e-15
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 3 
Query:  333 QSVAIGASA--KVEELEAKVLEGELQRRKMHNLIQELRGNVRVFARVRPFLPSDGVGPEEMPAVVGKGDGVGCVLSKRLIGDNGKELPPEAQSFSFDKCFPP 632
            + +A+GAS+  +V E E  + EG+ +RRKMHNLIQELRGNVRVFAR+RPFLP DGV  +  P  V K +      + +L  D   E   +  SF+FD+ F P
Sbjct:  714 KGLALGASSAEQVLEFEKTIREGQSERRKMHNLIQELRGNVRVFARIRPFLPGDGVDDDAQPMAVAKSE-----TALKLSMD---EKDRKGHSFTFDRVFGP 807
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BLAST of mRNA_Ecto-sp8_S_contig11400.1769.1 vs. uniprot
Match: A0A3L6V3C2_9STRA (Kinesin motor domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V3C2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.210e-15
Identity = 49/92 (53.26%), Postives = 60/92 (65.22%), Query Frame = 3 
Query:  357 AKVEELEAKVLEGELQRRKMHNLIQELRGNVRVFARVRPFLPSDGVGPEEMPAVVGKGDGVGCVLSKRLIGDNGKELPPEAQSFSFDKCFPP 632
            A++  LEAK+ +GE+QRRKMHN IQELRGNVRVFAR RPFLPSDG G   + A+   GD + CV  KR           E  +F+FD+ F P
Sbjct:  287 ARIAALEAKLKDGEVQRRKMHNTIQELRGNVRVFARTRPFLPSDGTGA--VSALACDGD-LQCVTLKR---------DKETHAFTFDRVFAP 366
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11400.1769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUV4_ECTSI6.270e-5595.10Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJH6_9PHAE1.130e-5495.10Kinesin motor domain-containing protein (Fragment)... [more]
A0A835YR54_9STRA1.400e-2154.74P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4JBW0_9STRA3.110e-1853.06Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4VFE5_9STRA1.580e-1750.49Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4V4X5_9STRA1.800e-1750.49Kinesin-like protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7R9W6B5_9STRA2.810e-1653.41Kinesin-like protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A4D9D7S4_9STRA3.010e-1653.33Kinesin motor domain-containing protein n=5 Tax=Mo... [more]
A0A7S3Q435_9STRA3.480e-1548.04Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A3L6V3C2_9STRA7.210e-1553.26Kinesin motor domain-containing protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11400contigEcto-sp8_S_contig11400:2609..4751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score135.2
Seed ortholog evalue3.6e-29
Seed eggNOG ortholog2880.D7FUV4
Model size636
KEGG koko:K07936,ko:K10406
KEGG Pathwayko03008,ko03013,ko05166,ko05169,map03008,map03013,map05166,map05169
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
Cds size633
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036,ko04031,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143215.0971546-CDS-Ecto-sp8_S_contig11400:2608..27971681143215.0971546-CDS-Ecto-sp8_S_contig11400:2608..2797Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11400 2609..2797 +
1681143215.1129923-CDS-Ecto-sp8_S_contig11400:3151..32971681143215.1129923-CDS-Ecto-sp8_S_contig11400:3151..3297Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11400 3152..3297 +
1681143215.1275291-CDS-Ecto-sp8_S_contig11400:4140..42361681143215.1275291-CDS-Ecto-sp8_S_contig11400:4140..4236Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11400 4141..4236 +
1681143215.1361551-CDS-Ecto-sp8_S_contig11400:4548..47501681143215.1361551-CDS-Ecto-sp8_S_contig11400:4548..4750Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11400 4549..4750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11400.1769.1prot_Ecto-sp8_S_contig11400.1769.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11400 2609..4750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11400.1769.1

>prot_Ecto-sp8_S_contig11400.1769.1 ID=prot_Ecto-sp8_S_contig11400.1769.1|Name=mRNA_Ecto-sp8_S_contig11400.1769.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=211bp
AIETLAVEKEARLRAETKEEDERRERISTTAQTAAVQQQHSKEMEAERVA
RVKLETESEIRAQASMADKAALREELVVAEERQLELEAEVRGLKAAVVDA
QTNAEQLEEMSRALPSARRLRWRSWRPRSWRGSYRGGRCTTSSRNSEETF
AFSRECGRSCPQMASGRKRCRPSWARATGLAACCPRGLSGTTARSFRRRR
SLSRSTSASRP
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mRNA from alignment at Ecto-sp8_S_contig11400:2609..4751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11400.1769.1 ID=mRNA_Ecto-sp8_S_contig11400.1769.1|Name=mRNA_Ecto-sp8_S_contig11400.1769.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2143bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11400:2609..4751+ (Ectocarpus species8 EcLAC_412)
GCAATCGAGACCCTGGCGGTGGAAAAGGAGGCGAGGCTGAGAGCCGAAAC
GAAGGAGGAGGACGAGAGGCGCGAGAGAATCTCGACCACCGCACAGACGG
CTGCCGTACAGCAGCAGCACTCAAAGGAGATGGAGGCCGAGCGCGTCGCC
AGGGTCAAGCTCGAGACGGAGTCTGAGATTCGCGCTCAGGTTCGTTGGGC
TTGGCTGGGGCGGGTGTTGCGAGCTCGCTTTGGTTGGAGGTGGCCGTTGG
TTAAGGGGTTGGGTCTGAAGGTTGTGGCTCGCGTTGGGTGCAGTAGTGCG
CCCGAAATGTTGTTGCTGCTGTCGGTCACGTTGTTATTTGTTTGTTGGTG
GTGGTGTTGATGTTGTTGTTGGTGGTGTAGTGGTACGTTTTAGCTGGTGC
CCGACAAAAATAGCTCTGACGGCGTTTGCTACTCCCCATCGCCCATGCTG
TACCCCCGCTACTACACTACAAACTTGCACTAAATATTAATAATACACAA
TACACAACACACCATGATGCGCAACAACGTCACGCCTCGTCAGGCTTCCA
TGGCCGACAAGGCCGCCCTCCGGGAGGAGCTGGTTGTCGCGGAGGAGCGT
CAGCTGGAGCTGGAGGCCGAGGTCCGCGGCCTGAAGGCAGCCGTTGTGGA
TGCCCAGACCAACGCCGAGCAGCTCGAGGAGATGAGCAGGTGATGTGTAA
AACCGGGGAGGTACCGGTAACCCCCCCGTTCTTAAGAACTTGGCGGTAAC
GTTTAAGAATTCGACACTTGAGTTAAGAACTTTATGCTCAACATTTTATC
GAACACAAGAGACTTGGGGGCACCATTTGTGAGCCCGGTTAAGAACGTCT
ACAGCCTATGTAGCGGCCATTTGTAGCCCGCAAGAGGAACGCCGAGGCTG
GGCCTCTCCGGCGTAAACTACTGTAGCGGTTCTTGAGGGCGGGCGCTGTC
TGTAGTAGCTTGGTAGGAGTGGCCTGTTTGGGTGATGATGCTGTGCCGCG
GAAAGCGAAGAGGACCCTAGCATATTTGGCGGCTGGAGTTGTTGTTGTCT
TCACAACAACAAAAAGGCGTTCCGATATTTCTGCGGGTGTGCTGTACGCT
TTTGCTGATGCCAAATGTATCCCTGACATCGCAATACTTGCTGTTCTCTG
CTTTTGCTAGTGTCGAATGGATCGCCGATGTCGCAGTACTTGCCGCTCTT
TGCTTGCCCGTATCGAACATGGATAGTGTCGCAATCTTACTGCTGCCTGC
TTGTTGGTGTCGAATGCGTCGCTACTATCGCAATACTTGCTGCTCTCTGC
TTTCGCTAATTTCGAACGTATCGCTGGTTTATGTATCACAATCACCCCCA
ACCCTCTTTCTAAATGCTCAGTCCTCTCGAGGACGCGTGGTCAACAGTCT
AACCGTTAAGGCATACAAAACATAAGAGCACGCCCCCCACCCCCCTACTA
CTACTGCCACTACTACTAAAGGGCTCAAGGAGAGCTGGAGGTCCTGCGCC
GCCGCCTGGAAGCTCTGTCGAAGGAAAAGGAGAGCGTTGCCATCGGCGCG
TCGGCTAAGGTGGAGGAGCTGGAGGCCAAGGTCCTGGAGGGGGAGTTACA
GAGGAGGAAGATGCACAACCTCATCCAGGTCGGTTTGAGTGTTCTTATTG
TGAAAAGCATCGACCTCGCCTATGGGTTGATCGATGGAAAGACGTCGGTC
TGTCAGTTTGGCTGCAAATAGCAAGTGCTGCTGAGGGTTACGATGATCTG
GGACCCTGAGTGAGTGTGTGTGTGTGTGTGTTTCTTGGATTAGCATCAAC
CGCGGTAACCGGCTGATCGATGGGAAGACGTCAGCCTCCCAGTGCGACCT
AAACAGAAAGTGCTGCTGAAGGCCATAATCTGGGCCCCCACGCCTTATTT
TCGCCCCCCCCAACCCAACCCAAACCCCCTCTTCCTGTAGGAACTCCGAG
GAAACGTTCGCGTTTTCGCGCGAGTGCGGCCGTTCCTGCCCTCAGATGGC
GTCGGGCCGGAAGAGATGCCGGCCGTCGTGGGCAAGGGCGACGGGGTTGG
CTGCGTGCTGTCCAAGAGGCTTATCGGGGACAACGGCAAGGAGCTTCCGC
CGGAGGCGCAGTCTTTCTCGTTCGACAAGTGCTTCCCGCCCAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11400:2609..4751+

>mRNA_Ecto-sp8_S_contig11400.1769.1 ID=mRNA_Ecto-sp8_S_contig11400.1769.1|Name=mRNA_Ecto-sp8_S_contig11400.1769.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11400:2609..4751+ (Ectocarpus species8 EcLAC_412)
GCAATCGAGACCCTGGCGGTGGAAAAGGAGGCGAGGCTGAGAGCCGAAAC
GAAGGAGGAGGACGAGAGGCGCGAGAGAATCTCGACCACCGCACAGACGG
CTGCCGTACAGCAGCAGCACTCAAAGGAGATGGAGGCCGAGCGCGTCGCC
AGGGTCAAGCTCGAGACGGAGTCTGAGATTCGCGCTCAGGCTTCCATGGC
CGACAAGGCCGCCCTCCGGGAGGAGCTGGTTGTCGCGGAGGAGCGTCAGC
TGGAGCTGGAGGCCGAGGTCCGCGGCCTGAAGGCAGCCGTTGTGGATGCC
CAGACCAACGCCGAGCAGCTCGAGGAGATGAGCAGAGCGTTGCCATCGGC
GCGTCGGCTAAGGTGGAGGAGCTGGAGGCCAAGGTCCTGGAGGGGGAGTT
ACAGAGGAGGAAGATGCACAACCTCATCCAGGAACTCCGAGGAAACGTTC
GCGTTTTCGCGCGAGTGCGGCCGTTCCTGCCCTCAGATGGCGTCGGGCCG
GAAGAGATGCCGGCCGTCGTGGGCAAGGGCGACGGGGTTGGCTGCGTGCT
GTCCAAGAGGCTTATCGGGGACAACGGCAAGGAGCTTCCGCCGGAGGCGC
AGTCTTTCTCGTTCGACAAGTGCTTCCCGCCCA
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