mRNA_Ecto-sp8_S_contig11396.1761.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11396.1761.1
Unique NamemRNA_Ecto-sp8_S_contig11396.1761.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11396.1761.1 vs. uniprot
Match: D7G0M9_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M9_ECTSI)

HSP 1 Score: 482 bits (1241), Expect = 2.470e-161
Identity = 265/307 (86.32%), Postives = 267/307 (86.97%), Query Frame = 3 
Query:    3 VEDSSMRGRSAADVTKAMYAALLKRTGKYGKSAATVRLVIVTPPWSASAPPPGGG-VDNKAGASAPASPYDGVGGMACLGREGHEGREFVELCWSVLMAAGGGVLPPTDVDLPASRAGERPAEQDAEVARRLGFDVERRELSQWMECIEVSSVTPDGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDSSASQTKKFDSKAATTXXXXXXXXXXXXXEDAFERLSADHGDDSDWLRFLVFRKCAAAAAPPPH------LTSAGRAKRPVGRPKGSMESKKVALAGGAGRGATGQKEE 902
            VEDSSMRGRSA+DVTKAMYAALLKRTGK+GKSAATVRLVIVTPPWSASAP PGGG VDNKAGA APASPYDGVGGMACLGRE HEGREFVELCWSVLMA GGGVLPPTDV LPASRAGERPAEQDAEVARRLGFDVERRELSQWMECIEVSSVTPDGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDS ASQT K   KAATT             EDAFERLSADHGDDSDWLRFLVFRKCA              L SAGRAKRPVGRPKGSMESKK ALAGGAGRGATGQKEE
Sbjct:  543 VEDSSMRGRSASDVTKAMYAALLKRTGKHGKSAATVRLVIVTPPWSASAPTPGGGGVDNKAGAFAPASPYDGVGGMACLGRERHEGREFVELCWSVLMAPGGGVLPPTDVGLPASRAGERPAEQDAEVARRLGFDVERRELSQWMECIEVSSVTPDGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDS-ASQTNKSGGKAATTNDSDN--------EDAFERLSADHGDDSDWLRFLVFRKCAXXXXXXXXXXXXXXLASAGRAKRPVGRPKGSMESKKGALAGGAGRGATGQKEE 840
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BLAST of mRNA_Ecto-sp8_S_contig11396.1761.1 vs. uniprot
Match: A0A6H5JEX0_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX0_9PHAE)

HSP 1 Score: 462 bits (1188), Expect = 3.990e-151
Identity = 264/314 (84.08%), Postives = 273/314 (86.94%), Query Frame = 3 
Query:    3 VEDSSMRGRSAADVTKAMYAALLKRTGKYGKSAATVRLVIVTPPWSASAPPPGGGVDNKAGASAPASPYDGVGGMACLGREGHEGREFVELCWSVLMAAGGGVLPPTDVDLPASRAGERPAEQDAEVARRLGFDVERRELSQWMECIEVSSVTPDGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDSSASQTKKFDSKAATTXXXXXXXXXXXXX--EDAFERLSADHGDDSDWLRFLVFRKCAAAAAPPPH------------LTSAGRAKRPVGRPKGSMESKKVALAGGAGRGATGQKEE 902
            VE+SSMRGRSAA+VTKAM+AALLKRTGK+ KSAATVRLVIVTPPW ASAPPPGGGVDNKAGASAPAS YDGVGGMACLGREGHEGREFVELCWSV MA+GGGVLPPTD D PASRAGERPAEQDAEVARRLGFDVERRELSQWMECIEVSS+TPDGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACD+ A QTKK  SKA+TT XXXXXXXXXXXX  +DAFERLSA H DDSDWLRFLVFRKCA                    L  AGRAKRPVGRP GSMESKK  LAGGAGRG TGQKEE
Sbjct:  694 VEESSMRGRSAAEVTKAMFAALLKRTGKHAKSAATVRLVIVTPPWLASAPPPGGGVDNKAGASAPASSYDGVGGMACLGREGHEGREFVELCWSVFMASGGGVLPPTDRDSPASRAGERPAEQDAEVARRLGFDVERRELSQWMECIEVSSITPDGVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDT-AFQTKKGGSKASTTAXXXXXXXXXXXXXGQDAFERLSAGHDDDSDWLRFLVFRKCAXXXXXXXXXXXXXXXXXXXXLAIAGRAKRPVGRPMGSMESKKGVLAGGAGRGVTGQKEE 1006
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11396.1761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0M9_ECTSI2.470e-16186.32PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JEX0_9PHAE3.990e-15184.08PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11396contigEcto-sp8_S_contig11396:2031..4657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size903
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-07_001500.1
Cds size885
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143214.5719562-CDS-Ecto-sp8_S_contig11396:2030..23791681143214.5719562-CDS-Ecto-sp8_S_contig11396:2030..2379Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11396 2031..2379 -
1681143214.5799928-CDS-Ecto-sp8_S_contig11396:2712..28191681143214.5799928-CDS-Ecto-sp8_S_contig11396:2712..2819Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11396 2713..2819 -
1681143214.587313-CDS-Ecto-sp8_S_contig11396:3213..34141681143214.587313-CDS-Ecto-sp8_S_contig11396:3213..3414Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11396 3214..3414 -
1681143214.5945463-CDS-Ecto-sp8_S_contig11396:4412..46401681143214.5945463-CDS-Ecto-sp8_S_contig11396:4412..4640Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11396 4413..4640 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143214.6017227-UTR-Ecto-sp8_S_contig11396:4640..46571681143214.6017227-UTR-Ecto-sp8_S_contig11396:4640..4657Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11396 4641..4657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11396.1761.1prot_Ecto-sp8_S_contig11396.1761.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11396 2031..4640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11396.1761.1

>prot_Ecto-sp8_S_contig11396.1761.1 ID=prot_Ecto-sp8_S_contig11396.1761.1|Name=mRNA_Ecto-sp8_S_contig11396.1761.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=295bp
MRGRSAADVTKAMYAALLKRTGKYGKSAATVRLVIVTPPWSASAPPPGGG
VDNKAGASAPASPYDGVGGMACLGREGHEGREFVELCWSVLMAAGGGVLP
PTDVDLPASRAGERPAEQDAEVARRLGFDVERRELSQWMECIEVSSVTPD
GVAARHGLQPKDLLLAVDGNHLLSTTEASFWLEVGRTLRACDSSASQTKK
FDSKAATTTTTTTTNDNDNDNEDAFERLSADHGDDSDWLRFLVFRKCAAA
AAPPPHLTSAGRAKRPVGRPKGSMESKKVALAGGAGRGATGQKEE
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mRNA from alignment at Ecto-sp8_S_contig11396:2031..4657-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11396.1761.1 ID=mRNA_Ecto-sp8_S_contig11396.1761.1|Name=mRNA_Ecto-sp8_S_contig11396.1761.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2627bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11396:2031..4657- (Ectocarpus species8 EcLAC_412)
AGGTGGAAGACTCATCCATGCGCGGACGGTCGGCCGCTGACGTCACGAAA
GCGATGTACGCCGCCCTCCTCAAGAGGACAGGCAAGTATGGCAAGTCGGC
GGCGACGGTGAGGCTGGTCATCGTCACGCCACCGTGGTCGGCGTCGGCAC
CACCGCCAGGCGGAGGCGTCGACAACAAGGCCGGGGCCTCTGCTCCCGCG
AGCCCTTACGACGGGGTGGGGGGTATGGCGTGCTTGGGCCGGGAGGTGTG
TTGTTGCTGTCGGATTTTTCCTTTTTTCCACGTAGGATGCTCGCGTGGCG
GTTGCTGTTGCTGTTGGAGTTTTTCACGTAAGGATGCTCGCTTGACAGTT
GTTGTTGCTGTTGGAGTTTTCCACTGAGGTTGCTCGCGTGACGGTTGCTA
TTGCCGTTGGAGTTTTTCACGCAAGGATGTCCGCGTGACGGTTGTTGTTG
TTGTCGTCGTAATAGTTGTGGGCGACCGCTGCCTTTTGGCTTTTTTCCTT
CCCGTACGCGTTCGCTTCGATGCCGCTTCATCACACACCCCTGTACTGTA
GAGGGCGGTATTGCGCCTTACCCTGGTCGTTTGTTGAAATGAAGGTAACC
CTGACCCTAACCCCGACCCTGACCGCCGCAAGCGTCGCGGAGGAACGGTT
GATGCTGCTGTGCCTACTTTCGGCCTGAGCCACGCAGTGGAGAGAGAGGC
GACCGTAGGCTACGTAGAGACTGCGAGCGGCGGCACGAATGGGATGACCA
GAACAGAGGGCACGTCATGTTCTAAAAACTCCCGTGTGTACGGCGGAAAA
CAACCGTCATGCGTCCGCGTTTTTTGCACCTGCTTCGTTACCCGGTCAAC
TAGAATACGTCGTGTTAAGAACACCTGTACAACAAGTGCTTGTGGAGACG
AAGATATGTCCGTATTTTTTCATGCGGTTTGTTTCGGGTACATCCACCCG
AACTATTTCTGGCGGGCCCTGAGAGATGATGCTGTACCGCCGATTGCCGT
CATCTCCAAGAGCGAGAGCGCCGAATTTTCTAGAGAGGTCAACACTCGAC
GAAATCATTCTCTAAAACGCCGAATGCGTTTTTTTTTCAATCCCTTGTCA
CCCTACCCCCCCTCGCCCCCCCCGCCCCCCTCCCCTCGGGGGGGGAGGGT
GAATTGAAGGCCTGCTACGACCTTTTGGGCCCCCCCCCCCCCCCCCTGTG
CGCGCGCACGGCGCATCCCCCCCACGCACACGACTGCGATCAGGGACACG
AAGGCCGGGAGTTCGTAGAGCTTTGCTGGTCGGTGTTGATGGCCGCGGGA
GGAGGCGTGCTTCCCCCAACCGACGTCGATTTGCCCGCGTCTCGAGCGGG
AGAGCGTCCGGCTGAGCAGGACGCGGAGGTGGCCCGGCGGCTGGGTTTCG
ACGTGGAGAGGCGGGAGCTGTCGCAGTGGATGGAGTGCATCGAGGTAGGC
GCAAGCGGGGGTGGGTGCAAGTTGTAGTAGGGTTGTCCTTTGAAACGTGG
TGCAAGGGGTGCTTTGTGCGTTGAGGTGCAAGCCGGGATAGATGGAAGCT
CGCAGTTGTTGTAGTATTGCAGAGCTCGTCCTGTTGAAGCGTAGTGCAAG
GGTTGCTGACGGTCTTGGCTGAGGGATGCGGTGGTGGTTGTTGTTGTGGA
TATCATGATGGATGGTAGAAGGTACTAAGCAGAGACCCGGACAGTTTTTA
TTGTGTCAAGACCACAACAACAACAACAGCGACTGGTCATGGCCCAGCGG
CTCTCTATTCTCGCAGTCATCCCCCCCTTCCGACAGCATGACTTACATTG
CCCTCCCTACATCCCAACACACCGGGTTCCGTGTCCAGGTGTCGTCCGTC
ACGCCAGACGGCGTGGCAGCCAGGCACGGCCTGCAGCCGAAGGACCTCTT
GCTTGCGGTGGATGGAAACCACCTTTTGTCCACAACCGAAGCCAGGTATA
TTTATTTATTTGTTTCCTCTACTCTTCTACTTACAGCAGTATTTGGTGTT
GACACGGAATTCCGGTTTCGTATTTTTGGCTTGTTCCGAGGCCAGTTTTT
TTTTTTTTTTGCCTCTCTATATAGAAGAGTGTGGTACCGTGCTTGGGGGG
GTAGTTGGGGCAATGGGACTACTACTGCAAAGCATGGATGGCCGGCGCTT
CAACATCTGCCATCCTGTCTCGAGGCGGCCGCTACCCACCTTGTCCTCTT
TCTATCGCTGACTCCCCCCTGGCCGTCGCGCTCTGCTTGTTTCCGTGTCG
TGCCGCAACCGCCGCCGCCGGCGCGCAGTTTTTGGCTCGAGGTCGGACGG
ACCCTTCGAGCCTGCGACTCCTCCGCCTCCCAAACGAAGAAGTTCGACAG
CAAGGCCGCTACCACCACCACCACCACCACCACCAACGACAACGACAACG
ACAACGAAGACGCCTTCGAGAGGCTTTCAGCCGACCACGGCGATGATTCC
GATTGGCTGCGGTTCCTGGTGTTCCGAAAATGCGCCGCCGCCGCCGCCCC
GCCGCCGCATCTTACGTCAGCCGGGAGGGCTAAGCGGCCGGTGGGGAGGC
CGAAGGGTTCGATGGAGAGTAAGAAGGTGGCGTTAGCGGGGGGGGCAGGA
CGAGGCGCCACTGGGCAGAAGGAAGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11396:2031..4657-

>mRNA_Ecto-sp8_S_contig11396.1761.1 ID=mRNA_Ecto-sp8_S_contig11396.1761.1|Name=mRNA_Ecto-sp8_S_contig11396.1761.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11396:2031..4657- (Ectocarpus species8 EcLAC_412)
ATGCGCGGACGGTCGGCCGCTGACGTCACGAAAGCGATGTACGCCGCCCT
CCTCAAGAGGACAGGCAAGTATGGCAAGTCGGCGGCGACGGTGAGGCTGG
TCATCGTCACGCCACCGTGGTCGGCGTCGGCACCACCGCCAGGCGGAGGC
GTCGACAACAAGGCCGGGGCCTCTGCTCCCGCGAGCCCTTACGACGGGGT
GGGGGGTATGGCGTGCTTGGGCCGGGAGGGACACGAAGGCCGGGAGTTCG
TAGAGCTTTGCTGGTCGGTGTTGATGGCCGCGGGAGGAGGCGTGCTTCCC
CCAACCGACGTCGATTTGCCCGCGTCTCGAGCGGGAGAGCGTCCGGCTGA
GCAGGACGCGGAGGTGGCCCGGCGGCTGGGTTTCGACGTGGAGAGGCGGG
AGCTGTCGCAGTGGATGGAGTGCATCGAGGTGTCGTCCGTCACGCCAGAC
GGCGTGGCAGCCAGGCACGGCCTGCAGCCGAAGGACCTCTTGCTTGCGGT
GGATGGAAACCACCTTTTGTCCACAACCGAAGCCAGTTTTTGGCTCGAGG
TCGGACGGACCCTTCGAGCCTGCGACTCCTCCGCCTCCCAAACGAAGAAG
TTCGACAGCAAGGCCGCTACCACCACCACCACCACCACCACCAACGACAA
CGACAACGACAACGAAGACGCCTTCGAGAGGCTTTCAGCCGACCACGGCG
ATGATTCCGATTGGCTGCGGTTCCTGGTGTTCCGAAAATGCGCCGCCGCC
GCCGCCCCGCCGCCGCATCTTACGTCAGCCGGGAGGGCTAAGCGGCCGGT
GGGGAGGCCGAAGGGTTCGATGGAGAGTAAGAAGGTGGCGTTAGCGGGGG
GGGCAGGACGAGGCGCCACTGGGCAGAAGGAAGAG
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