mRNA_Ecto-sp8_S_contig11391.1756.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11391.1756.1
Unique NamemRNA_Ecto-sp8_S_contig11391.1756.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11391.1756.1 vs. uniprot
Match: D7G885_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G885_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 4.400e-92
Identity = 135/149 (90.60%), Postives = 140/149 (93.96%), Query Frame = 3 
Query:   33 PPHPPHLAAVLLPSGYYSVESGRGDGPGKDAVKGSGTSTGSTGTKKSVIEAGEVAGDYSLDWKGTFDMTLVLVTVAWLAVNIGLTLWMQPTLFHNAEFWVLQIPKLAFMIVVSILAGSLCRHFCPADDTGYIMTSKNSWFKARTMLCAP 479
            PPH P LAAVL PS YYSVE+GRGDGPGK A KGS TS GSTGTKKSVIEAGEVAGDYSLDWKGTFDMTLV VTVAWLAVNIGLTLW++PTLFHNAEFWVLQ+PKLAFMIVVSILAGSLCRHFCPADDTGYIMTSKNSWFKARTMLC+P
Sbjct:   14 PPHAPPLAAVL-PSDYYSVENGRGDGPGKGADKGSCTSAGSTGTKKSVIEAGEVAGDYSLDWKGTFDMTLVQVTVAWLAVNIGLTLWIKPTLFHNAEFWVLQVPKLAFMIVVSILAGSLCRHFCPADDTGYIMTSKNSWFKARTMLCSP 161
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BLAST of mRNA_Ecto-sp8_S_contig11391.1756.1 vs. uniprot
Match: D8LR81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR81_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 1.380e-68
Identity = 112/132 (84.85%), Postives = 117/132 (88.64%), Query Frame = 3 
Query:   75 GYYSVESGRGDGPGKDAVKG-----SGTSTGSTGTKKSVIEAGEVAGDYSLDWKGTFDMTLVLVTVAWLAVNIGLTLWMQPTLFHNAEFWVLQIPKLAFMIVVSILAGSLCRHFCPADDTGYIMTSKNSWFK 455
            GYYSVE+GRG+ PG  A KG     S TSTGSTGT KSVIEAGEVAGDYSLDWKGTFDMTLV VTVAWLAVNIGLTLW+QPTLF NAEFWVLQ+PKLA MI VSILAGSLCR+FCPADDTGYIMTSKNSWFK
Sbjct:   85 GYYSVENGRGNSPGNGAGKGLPSGNSYTSTGSTGTNKSVIEAGEVAGDYSLDWKGTFDMTLVQVTVAWLAVNIGLTLWIQPTLFQNAEFWVLQVPKLACMIAVSILAGSLCRYFCPADDTGYIMTSKNSWFK 216
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BLAST of mRNA_Ecto-sp8_S_contig11391.1756.1 vs. uniprot
Match: A0A6H5J7Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Y0_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 8.490e-39
Identity = 67/81 (82.72%), Postives = 72/81 (88.89%), Query Frame = 3 
Query:  234 MTLVLVTVAWLAVNIGLTLWMQPTLFHNAEFWVLQIPKLAFMIVVSILAGSLCRHFCPADDTGYIMTSKNSWFKARTMLCA 476
            MTLVLVTVAWLAVNIGLTLW+ PTLF NA+FWVLQ+PKLA MIVVS+LAGSLCR+FCPADDTGYIMTSKNSWFK      A
Sbjct:    1 MTLVLVTVAWLAVNIGLTLWIHPTLFQNAQFWVLQVPKLACMIVVSVLAGSLCRYFCPADDTGYIMTSKNSWFKVNGQTTA 81
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BLAST of mRNA_Ecto-sp8_S_contig11391.1756.1 vs. uniprot
Match: F0WSW8_9STRA (Uncharacterized protein AlNc14C241G9457 n=2 Tax=Albugo TaxID=65356 RepID=F0WSW8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.120e-24
Identity = 47/97 (48.45%), Postives = 68/97 (70.10%), Query Frame = 3 
Query:  165 KKSVIEAGEVAGDYSLDWKGTFDMTLVLVTVAWLAVNIGLTLWMQPTLFHNAEFWVLQIPKLAFMIVVSILAGSLCRHFCPADDTGYIMTSKNSWFK 455
            + S++E GEVAG+Y  DW  TFD   V+  V + A  I LT + QP LFH+  FW+LQ+PKL  M++VS+  G +CRH+C  D+ GYI+T+++S+FK
Sbjct:   83 RTSLVEEGEVAGNYEKDWTKTFDFVFVVGVVLFAAGLIVLTYFTQPYLFHSGVFWLLQLPKLGIMMLVSLCGGFICRHYCEVDEKGYIITNRSSFFK 179
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BLAST of mRNA_Ecto-sp8_S_contig11391.1756.1 vs. uniprot
Match: A0A024TYM2_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024TYM2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.100e-23
Identity = 47/97 (48.45%), Postives = 65/97 (67.01%), Query Frame = 3 
Query:  165 KKSVIEAGEVAGDYSLDWKGTFDMTLVLVTVAWLAVNIGLTLWMQPTLFHNAEFWVLQIPKLAFMIVVSILAGSLCRHFCPADDTGYIMTSKNSWFK 455
            K S+ E GEVAGDY   W  TFDM  ++  + +LAV + LT +  P  F +  FW++Q+PKL  M++VS++ G +CR FC  DD GYI+T+KNS FK
Sbjct:   77 KSSLCEEGEVAGDYEDSWVNTFDMVFLIFMLLYLAVMVVLTYYFSPEYFTDPTFWLMQLPKLGCMMLVSLIGGIICRCFCTVDDKGYIITNKNSAFK 173
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BLAST of mRNA_Ecto-sp8_S_contig11391.1756.1 vs. uniprot
Match: A0A6A4XMZ5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XMZ5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.520e-23
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 3 
Query:  138 GTSTGSTGTKKSVIEAGEVAGDYSLDWKGTFDMTLVLVTVAWLAVNIGLTLWMQPTLFHNAEFWVLQIPKLAFMIVVSILAGSLCRHFCPADDTGYIMTSKNSWFK 455
            G +T +   +  +   GE AGDY  DW  TFD   +L  V +L V + LT +    LF N EFW+ Q+PK+A M++VS+L G +CRHFC  D  GYIMT+KNS FK
Sbjct:   74 GATTQNASPQGDICHEGEAAGDYDDDWTHTFDYVFLLGMVGYLVVMLVLTYFFHADLFTNPEFWLSQLPKVACMMLVSLLGGLICRHFCRVDQKGYIMTNKNSAFK 179
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BLAST of mRNA_Ecto-sp8_S_contig11391.1756.1 vs. uniprot
Match: A0A0W8CY76_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CY76_PHYNI)

HSP 1 Score: 102 bits (255), Expect = 3.850e-23
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 3 
Query:  156 TGTKKSVIEAGEVAGDYSLDWKGTFDMTLVLVTVAWLAVNIGLTLWMQPTLFHNAEFWVLQIPKLAFMIVVSILAGSLCRHFCPADDTGYIMTSKNSWFK 455
            T  K S++E GEVAGDY   W  TFD   ++    +  V + LT + +P   H   FW++Q+PKL  M+VVS+L G +CR FC  D+ GYIMT+K+S FK
Sbjct:   57 TAVKTSLVEEGEVAGDYEEHWYNTFDFAFLVGMAVYAGVMLVLTFFYEPQWLHETRFWIMQLPKLVVMMVVSLLGGIICRCFCDVDEKGYIMTNKSSKFK 156
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BLAST of mRNA_Ecto-sp8_S_contig11391.1756.1 vs. uniprot
Match: A0A485K4N3_9STRA (Aste57867_62 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K4N3_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.580e-23
Identity = 47/97 (48.45%), Postives = 65/97 (67.01%), Query Frame = 3 
Query:  165 KKSVIEAGEVAGDYSLDWKGTFDMTLVLVTVAWLAVNIGLTLWMQPTLFHNAEFWVLQIPKLAFMIVVSILAGSLCRHFCPADDTGYIMTSKNSWFK 455
            K S+ E GEVAGDY   W  TFDM  ++  +A+L V + LT +  P  F +  FW++Q+PKL  M++VS+L G +CR FC  D+ GYI+T+KNS FK
Sbjct:   88 KSSLCEEGEVAGDYEESWTSTFDMVFLIFMLAYLGVMLVLTYFYSPQYFSDINFWLMQLPKLGCMMLVSLLGGLVCRCFCNVDEKGYIITNKNSAFK 184
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BLAST of mRNA_Ecto-sp8_S_contig11391.1756.1 vs. uniprot
Match: A0A0W8CS34_PHYNI (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CS34_PHYNI)

HSP 1 Score: 102 bits (255), Expect = 5.890e-23
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 3 
Query:  156 TGTKKSVIEAGEVAGDYSLDWKGTFDMTLVLVTVAWLAVNIGLTLWMQPTLFHNAEFWVLQIPKLAFMIVVSILAGSLCRHFCPADDTGYIMTSKNSWFK 455
            T  K S++E GEVAGDY   W  TFD   ++    +  V + LT + +P   H   FW++Q+PKL  M+VVS+L G +CR FC  D+ GYIMT+K+S FK
Sbjct:   78 TAVKTSLVEEGEVAGDYEEHWYNTFDFAFLVGMAVYAGVMLVLTFFYEPQWLHETRFWIMQLPKLVVMMVVSLLGGIICRCFCDVDEKGYIMTNKSSKFK 177
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BLAST of mRNA_Ecto-sp8_S_contig11391.1756.1 vs. uniprot
Match: A0A0P1B556_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B556_PLAHL)

HSP 1 Score: 102 bits (253), Expect = 9.810e-23
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 3 
Query:  156 TGTKKSVIEAGEVAGDYSLDWKGTFDMTLVLVTVAWLAVNIGLTLWMQPTLFHNAEFWVLQIPKLAFMIVVSILAGSLCRHFCPADDTGYIMTSKNSWFK 455
            T  K S++E GEVAGDY   W GTFD   ++    +  V + LT   +P   H  +FWV+Q+PKL  M+VVS++ G +CR FC  D+ GYIMT+K+S FK
Sbjct:   79 TTMKTSLVEEGEVAGDYEEHWYGTFDFAFLIGMAVYAGVMVILTYIYEPQWLHETKFWVMQLPKLVVMMVVSLVGGIICRCFCDVDEKGYIMTNKSSRFK 178
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11391.1756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G885_ECTSI4.400e-9290.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LR81_ECTSI1.380e-6884.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7Y0_9PHAE8.490e-3982.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0WSW8_9STRA3.120e-2448.45Uncharacterized protein AlNc14C241G9457 n=2 Tax=Al... [more]
A0A024TYM2_9STRA2.100e-2348.45Uncharacterized protein n=8 Tax=Aphanomyces TaxID=... [more]
A0A6A4XMZ5_9STRA3.520e-2347.17Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A0W8CY76_PHYNI3.850e-2346.00Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A485K4N3_9STRA4.580e-2348.45Aste57867_62 protein n=1 Tax=Aphanomyces stellatus... [more]
A0A0W8CS34_PHYNI5.890e-2346.00Uncharacterized protein n=13 Tax=Phytophthora TaxI... [more]
A0A0P1B556_PLAHL9.810e-2347.00Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11391contigEcto-sp8_S_contig11391:4722..6492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score141.7
Seed ortholog evalue1.5e-31
Seed eggNOG ortholog2880.D8LR81
Model size482
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG OGs2CMNQ@1,2QR22@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_010660.1
Cds size249
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143214.2436442-CDS-Ecto-sp8_S_contig11391:4721..48651681143214.2436442-CDS-Ecto-sp8_S_contig11391:4721..4865Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11391 4722..4865 -
1681143214.2520843-CDS-Ecto-sp8_S_contig11391:5560..56651681143214.2520843-CDS-Ecto-sp8_S_contig11391:5560..5665Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11391 5561..5665 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143214.266298-UTR-Ecto-sp8_S_contig11391:5665..56761681143214.266298-UTR-Ecto-sp8_S_contig11391:5665..5676Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11391 5666..5676 -
1681143214.2743587-UTR-Ecto-sp8_S_contig11391:6270..64921681143214.2743587-UTR-Ecto-sp8_S_contig11391:6270..6492Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11391 6271..6492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11391.1756.1prot_Ecto-sp8_S_contig11391.1756.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11391 4722..5665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11391.1756.1

>prot_Ecto-sp8_S_contig11391.1756.1 ID=prot_Ecto-sp8_S_contig11391.1756.1|Name=mRNA_Ecto-sp8_S_contig11391.1756.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=83bp
MTLVLVTVAWLAVNIGLTLWMQPTLFHNAEFWVLQIPKLAFMIVVSILAG
SLCRHFCPADDTGYIMTSKNSWFKARTMLCAP*
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mRNA from alignment at Ecto-sp8_S_contig11391:4722..6492-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11391.1756.1 ID=mRNA_Ecto-sp8_S_contig11391.1756.1|Name=mRNA_Ecto-sp8_S_contig11391.1756.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1771bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11391:4722..6492- (Ectocarpus species8 EcLAC_412)
CGCTCTAGTCCGTACAAACGACGCTTCCTTCCCCCCCCCATCCTCCCCAT
CTCGCCGCTGTCCTTCTGCCCAGCGGTTATTACTCCGTGGAGAGTGGGCG
TGGGGACGGTCCCGGGAAGGATGCCGTCAAGGGCAGCGGCACCTCCACCG
GGTCTACAGGGACGAAGAAGTCGGTGATAGAGGCCGGCGAGGTGGCGGGG
GACTACTCTTTGGACTGGAAGGGTGAGAGAGGAACCGGGTCCGACCTGAC
AGGGCTCACGCAACCGTAGAGGTCTGTAGCACATCAACGCGTGTTCACGA
GTCAGGAAGACCACAATGATGATGGATTCAACGTGACCCTTCCTTGGTTC
GGGCGGCGAAATTTGTTCGTTGTTTTCTGTCGTTACCCCTCCCCAACGCA
GACTCGCGCAATTTTCCAGGAAGGATAGCAGGCGTATCAGCCTTGCTGTA
GCAGGCTAGCCTTACAGCAGGGGGATAGTAAGCCGGACTGAAAGAGCAGT
GAGCAGGCTTGTTTTGTTGTAGTATAGGCGATGAGCAGGTGGTTCGGCTG
ACAGGCGACAGACTGGTTGGACGTCATGGATGCCTTGAGAAAACACCTCG
AGCTAGAGGCGTGATTTACACGGCGTACAAAGTCGGTCAAAGTGGGCTGC
AGTAGCATGGCACCTGAATCAGATCCGATTTCATGGAAAGGGGCGATGAG
AAAACACGTTAAGTTGCAAGGGCGCGTTTTGTATGTAATTTTTGTCTTGA
ACTCCCCAAAACATGCAGCACGACCGTACCCAATCATCCCTCTCCCACCC
CTCCCCTCTCCATCAGGCACATTCGACATGACACTGGTGCTGGTGACGGT
GGCCTGGTTGGCAGTAAACATCGGGCTCACACTGTGGATGCAGCCGACCC
TGTTCCATAACGCAGAATTCTGGGTGCTACAGGTGCGTTGTCCTTGGTGT
CGAGGCTAGGATTGGTACAGTAGTGTTGTCCGATCATGTAGTAGCATGTG
CGGATTCTGGTTGAGTACATATTCACACCTCCTTCGTATTTACCTCCTTG
CTCTTTGGTCGGTGGAAGCTATTGTACCGCTGGGGCTTCAGGGAAGCTTC
GGTGGCAAAGGTTTTATGTACACCTTTGTTATTTGTGTGGTGGTGGGAGT
AGCGTAGCGCGAAGGTGGACATACCGATTCTGGAAAAGAGTCAATCGACG
GATATCCTGGGAATCGGGTCCTCCGTAGATACCAGTAGCGGAAACCCTAC
ATAGACTACATGTCGATTGGTTTGCAAACAGGTGTACTGTTCTGTTTTCC
TTCCCCGCCCCCACCGGGTGACTCCGGCTGGTGCGTCAAACATATCAATA
CATCAATAAGCCAAGACTGGTGGCCAGAAGAGATAGGATGAAACCACGCC
AACCGAGACCCACACCGCCGTACTTTCAGTTGGCTCCACTACGCTAATAG
TGCTGTCCGTTTCTCCTAATGATGAAATGGGCTTGCCGTTTGTAGGCTGA
CCGGACGTCCATCGCATTTACGTTCATTGCATGAACAATAGCCGTCGCTC
GGTTGCGCTCTTTGCTTGATTGTGCTCTGATTCGCACCGCCGCCACCGCC
GCCGACTTGTTTGTGACCATGTTGCAGATCCCTAAGCTGGCCTTCATGAT
AGTGGTATCTATTTTGGCCGGCTCCCTGTGCCGGCACTTCTGCCCTGCGG
ATGACACGGGGTATATCATGACATCCAAGAACTCGTGGTTCAAGGCGAGA
ACTATGCTGTGTGCGCCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11391:4722..6492-

>mRNA_Ecto-sp8_S_contig11391.1756.1 ID=mRNA_Ecto-sp8_S_contig11391.1756.1|Name=mRNA_Ecto-sp8_S_contig11391.1756.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11391:4722..6492- (Ectocarpus species8 EcLAC_412)
ATGACACTGGTGCTGGTGACGGTGGCCTGGTTGGCAGTAAACATCGGGCT
CACACTGTGGATGCAGCCGACCCTGTTCCATAACGCAGAATTCTGGGTGC
TACAGATCCCTAAGCTGGCCTTCATGATAGTGGTATCTATTTTGGCCGGC
TCCCTGTGCCGGCACTTCTGCCCTGCGGATGACACGGGGTATATCATGAC
ATCCAAGAACTCGTGGTTCAAGGCGAGAACTATGCTGTGTGCGCCGTAG
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