mRNA_Ecto-sp8_S_contig11377.1745.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11377.1745.1
Unique NamemRNA_Ecto-sp8_S_contig11377.1745.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11377.1745.1 vs. uniprot
Match: Q8QKX8_ESV1K (EsV-1-144 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKX8_ESV1K)

HSP 1 Score: 763 bits (1969), Expect = 4.380e-268
Identity = 556/698 (79.66%), Postives = 602/698 (86.25%), Query Frame = 1 
Query:    7 IPFNLNYPIERARADVQKTNIKTNIKQALEEVFGDQLKRIETAVGKGGGXXXXXXXXRGKRPQRTIKRLTKEKQEAIDLAKLHLDQLNALLSTQGGASASDLADAKQKLAEALRNLQTCEGKRNDSAQKILNMKALVNEVTRKKPSQDTIDGLKQSLIDEGEDRFADRIDNLYTAIEGCKVQLEELQSLQTTGSADPQREAEISGLRQKIANLEQTARQAGADCDKRLDSLKKGHKSTVLDLQQQLDECRKQVEGLPTGEAVKALETKLAACKESVKKYRHQVAKLQSLELQGSEKCGALEGEKKLLNEQIDSMKAEATRIENEVKNQREXXXXXXXXXXXXXXXXXXXXXXXEAVEQIKKLLAAKAEAHKAELKEKEGVSAASIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDCQEKLDSLNQNAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDES--GLSIEDILADSDWLQTFMNAVTPKYNQDGKFTHGPGKGTLKTHVVSKLGFVGSKDMVNLGNLLSDKTPSADEPSRKKEQRVKYHQQNFATKTARNITLYRNTPQAKTVNLTNTKAFRIFLGIRSRIVAPGGSLLITRNENARLFSMIVGYFGLITPKSDGVDKQVHLEPNESGQFTRELLSKASFDLSNLFVWM 2094
            IPFNLNYPIERARADVQKTNIKTNIKQALEEVFGDQLKRIETAVG G  XXXXXXX   KR +RTIK+LTKEKQ A+DLAK+ LD+LNAL S QGGASASDLADAKQKLAEALRNLQTCEGKRND AQKIL+MKALV EVTRKKPSQDTID LKQSLID+GE+RFA++ID L+TAIEGCK +L ELQSL+TTG ADPQREAEISGLRQKIANL++TA+QAG DCDKRLD L+  HK  V  L+QQLDECRKQV GLPT EAVKALETKLAAC++SV++YR +VAKLQS EL+GSEKCGAL+ +  LL +QI+SMKAEATRIENEV+    XXXXXXXXXXXXXXXXXXXXXXXEA EQIK LLA KA+ H+AELKEKEG  AASIA XXXXXXXXXXXXXXXXXX               SDCQ KLDSL QNAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +  G+ IE I+AD+ WLQTF NAVTPK NQ GKFTHGPGK TL T+VVSKLGFVG KDM+NLG+LLSDK   ADEPSR  E RV+YH+ NFAT T RNITL     Q KTVNLTNT+AFRIFLGIRSRIVA GGSLLI R ENARLFSMIVGYFGLITPKSDG ++QVHL+PNESGQFTR+ L+KASFDLSNLFVWM
Sbjct:    8 IPFNLNYPIERARADVQKTNIKTNIKQALEEVFGDQLKRIETAVGNGXXXXXXXXXW--KRQKRTIKKLTKEKQHALDLAKIRLDELNALRSNQGGASASDLADAKQKLAEALRNLQTCEGKRNDGAQKILDMKALVTEVTRKKPSQDTIDVLKQSLIDKGEERFANKIDTLFTAIEGCKHRLLELQSLKTTGPADPQREAEISGLRQKIANLQETAQQAGTDCDKRLDYLRGQHKDAVTSLKQQLDECRKQVGGLPTDEAVKALETKLAACEKSVEEYRRRVAKLQSPELEGSEKCGALKDQMGLLEKQIESMKAEATRIENEVEXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAEQIKNLLAEKAKVHEAELKEKEGTPAASIARXXXXXXXXXXXXXXXXXXTRAAQQQAADAKKQASDCQVKLDSLIQNAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVRGVDIEQIIADATWLQTFKNAVTPKTNQAGKFTHGPGKATLSTYVVSKLGFVGKKDMINLGSLLSDKRIPADEPSRNSEHRVQYHKWNFATPTPRNITL-----QEKTVNLTNTEAFRIFLGIRSRIVADGGSLLIARTENARLFSMIVGYFGLITPKSDGKERQVHLKPNESGQFTRDDLNKASFDLSNLFVWM 698
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11377.1745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QKX8_ESV1K4.380e-26879.66EsV-1-144 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11377contigEcto-sp8_S_contig11377:3229..5493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2097
Hectar predicted targeting categoryother localisation
Exons2
Cds size2097
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143213.4090867-CDS-Ecto-sp8_S_contig11377:3228..39231681143213.4090867-CDS-Ecto-sp8_S_contig11377:3228..3923Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11377 3229..3923 -
1681143213.420728-CDS-Ecto-sp8_S_contig11377:4091..54931681143213.420728-CDS-Ecto-sp8_S_contig11377:4091..5493Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11377 4092..5493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11377.1745.1prot_Ecto-sp8_S_contig11377.1745.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11377 3229..5493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11377.1745.1

>prot_Ecto-sp8_S_contig11377.1745.1 ID=prot_Ecto-sp8_S_contig11377.1745.1|Name=mRNA_Ecto-sp8_S_contig11377.1745.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=699bp
MSIPFNLNYPIERARADVQKTNIKTNIKQALEEVFGDQLKRIETAVGKGG
GGGGGDTGGRGKRPQRTIKRLTKEKQEAIDLAKLHLDQLNALLSTQGGAS
ASDLADAKQKLAEALRNLQTCEGKRNDSAQKILNMKALVNEVTRKKPSQD
TIDGLKQSLIDEGEDRFADRIDNLYTAIEGCKVQLEELQSLQTTGSADPQ
REAEISGLRQKIANLEQTARQAGADCDKRLDSLKKGHKSTVLDLQQQLDE
CRKQVEGLPTGEAVKALETKLAACKESVKKYRHQVAKLQSLELQGSEKCG
ALEGEKKLLNEQIDSMKAEATRIENEVKNQREEAEKQATRAQKKAVEAQK
SASEAEAVEQIKKLLAAKAEAHKAELKEKEGVSAASIARATAEAEQARKE
ADEAKALTRAAQQEAADAKKQASDCQEKLDSLNQNAGTGGGTGGASGGAS
GGGGGGGGGGGTGAGTGSGGGGGGGSGGGGGDGGGGGGGSGGGGGGAGVG
GDESGLSIEDILADSDWLQTFMNAVTPKYNQDGKFTHGPGKGTLKTHVVS
KLGFVGSKDMVNLGNLLSDKTPSADEPSRKKEQRVKYHQQNFATKTARNI
TLYRNTPQAKTVNLTNTKAFRIFLGIRSRIVAPGGSLLITRNENARLFSM
IVGYFGLITPKSDGVDKQVHLEPNESGQFTRELLSKASFDLSNLFVWM*
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mRNA from alignment at Ecto-sp8_S_contig11377:3229..5493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11377.1745.1 ID=mRNA_Ecto-sp8_S_contig11377.1745.1|Name=mRNA_Ecto-sp8_S_contig11377.1745.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2265bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11377:3229..5493- (Ectocarpus species8 EcLAC_412)
ATGTCGATACCATTCAACTTGAACTATCCCATCGAGAGGGCGCGCGCCGA
CGTCCAAAAGACCAACATCAAGACCAACATCAAGCAGGCCCTGGAAGAAG
TCTTCGGGGACCAGCTGAAGAGGATTGAAACTGCGGTGGGGAAAGGTGGG
GGGGGGGGGGGGGGTGATACAGGAGGTAGGGGGAAACGGCCACAAAGGAC
AATCAAAAGGCTGACAAAAGAGAAACAAGAGGCAATAGACTTGGCGAAAT
TACATCTCGATCAACTTAATGCGCTTCTATCGACACAAGGTGGTGCGTCG
GCATCCGACTTGGCCGACGCTAAGCAAAAATTAGCAGAGGCACTCCGAAA
TCTACAAACATGCGAAGGGAAGAGAAACGATAGTGCCCAGAAAATACTCA
ACATGAAAGCTTTGGTGAATGAGGTGACAAGAAAGAAACCTTCTCAAGAC
ACTATCGATGGCCTGAAGCAAAGTCTCATTGACGAAGGCGAAGACCGATT
TGCGGATAGAATCGATAATTTGTATACTGCAATCGAAGGGTGTAAGGTTC
AACTGGAAGAATTACAGTCTCTCCAGACAACAGGATCAGCAGATCCCCAG
CGCGAGGCAGAAATCTCTGGTTTGAGACAAAAGATTGCTAATCTTGAACA
AACAGCACGACAGGCCGGCGCCGATTGTGACAAACGGCTTGATTCGTTGA
AGAAAGGACACAAAAGCACAGTCTTAGACCTCCAGCAACAGCTCGACGAG
TGCCGAAAACAAGTGGAAGGTTTGCCCACTGGCGAGGCAGTGAAGGCACT
TGAGACAAAGCTGGCCGCGTGTAAGGAGAGTGTCAAGAAATACAGACATC
AAGTAGCCAAGTTACAATCACTCGAACTTCAAGGCAGCGAGAAATGCGGT
GCCCTGGAAGGAGAGAAGAAACTTTTGAATGAGCAGATCGATTCAATGAA
AGCAGAGGCGACACGAATTGAAAACGAGGTTAAGAATCAAAGGGAAGAGG
CAGAAAAACAAGCAACACGAGCACAAAAAAAAGCAGTTGAAGCACAGAAA
AGCGCGTCGGAAGCCGAAGCAGTCGAACAAATCAAAAAACTGTTGGCAGC
CAAGGCAGAAGCACACAAAGCTGAGCTCAAAGAAAAAGAAGGGGTGTCAG
CAGCCTCGATAGCGCGGGCGACAGCAGAGGCAGAGCAGGCTCGGAAAGAG
GCCGATGAGGCAAAAGCGTTAACCCGCGCAGCACAACAAGAAGCCGCCGA
TGCTAAGAAGCAAGCCAGTGATTGTCAAGAAAAACTCGATAGTTTAAATC
AAAACGCTGGGACTGGAGGTGGGACTGGAGGCGCAAGTGGAGGCGCAAGT
GGAGGCGGAGGCGGAGGCGGAGGCGGAGGTGGGACTGGAGCTGGGACTGG
AAGTGGCACTGGAGCTGGGACTGGAGCTGGGACTGGAGCTGGGACTGGAA
GTGGCAGCGGAGGCGGAGGCGGAGGTGGGCCTGGAGGTGGGACTGGACGT
GGGACTGGACGTGGGACCGGAGGTGGGACTGGACGTGGGACTGGACATGG
GACTGGACGTGGGACTGGAGGTGGAGGCGGAGGCGGAGGTGGCAGCGGAG
GCGGAGGCGGAGACGGAGGCGGAGGCGGAGGTGGCAGCGGAGGTGGAGGC
GGAGGTGCAGGCGTAGGTGGAGACGAAAGTGGATTGAGTATTGAAGACAT
TCTTGCAGACTCAGATTGGCTACAAACCTTCATGAACGCCGTGACACCAA
AATATAATCAAGATGGAAAATTCACTCACGGCCCTGGCAAAGGCACTTTA
AAGACACACGTGGTGTCGAAACTCGGTTTTGTTGGATCGAAGGACATGGT
CAATCTCGGCAACCTTCTTAGCGACAAAACGCCATCAGCAGACGAACCAT
CTCGAAAAAAGGAACAACGCGTTAAATACCATCAACAGAACTTCGCAACG
AAAACTGCGAGAAACATCACACTTTACCGTAACACACCCCAAGCGAAAAC
GGTAAATCTGACAAATACGAAGGCTTTCCGTATCTTCCTCGGGATAAGAT
CACGTATAGTAGCACCTGGCGGTAGTCTTCTCATCACACGCAACGAAAAC
GCCCGTCTGTTCTCAATGATTGTTGGTTATTTCGGATTGATCACTCCGAA
AAGCGATGGGGTAGATAAACAGGTTCATTTGGAACCGAATGAGAGTGGGC
AATTTACCCGGGAACTTCTTAGTAAGGCTTCTTTTGATCTCTCAAATTTG
TTCGTATGGATGTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11377:3229..5493-

>mRNA_Ecto-sp8_S_contig11377.1745.1 ID=mRNA_Ecto-sp8_S_contig11377.1745.1|Name=mRNA_Ecto-sp8_S_contig11377.1745.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=2097bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11377:3229..5493- (Ectocarpus species8 EcLAC_412)
ATGTCGATACCATTCAACTTGAACTATCCCATCGAGAGGGCGCGCGCCGA
CGTCCAAAAGACCAACATCAAGACCAACATCAAGCAGGCCCTGGAAGAAG
TCTTCGGGGACCAGCTGAAGAGGATTGAAACTGCGGTGGGGAAAGGTGGG
GGGGGGGGGGGGGGTGATACAGGAGGTAGGGGGAAACGGCCACAAAGGAC
AATCAAAAGGCTGACAAAAGAGAAACAAGAGGCAATAGACTTGGCGAAAT
TACATCTCGATCAACTTAATGCGCTTCTATCGACACAAGGTGGTGCGTCG
GCATCCGACTTGGCCGACGCTAAGCAAAAATTAGCAGAGGCACTCCGAAA
TCTACAAACATGCGAAGGGAAGAGAAACGATAGTGCCCAGAAAATACTCA
ACATGAAAGCTTTGGTGAATGAGGTGACAAGAAAGAAACCTTCTCAAGAC
ACTATCGATGGCCTGAAGCAAAGTCTCATTGACGAAGGCGAAGACCGATT
TGCGGATAGAATCGATAATTTGTATACTGCAATCGAAGGGTGTAAGGTTC
AACTGGAAGAATTACAGTCTCTCCAGACAACAGGATCAGCAGATCCCCAG
CGCGAGGCAGAAATCTCTGGTTTGAGACAAAAGATTGCTAATCTTGAACA
AACAGCACGACAGGCCGGCGCCGATTGTGACAAACGGCTTGATTCGTTGA
AGAAAGGACACAAAAGCACAGTCTTAGACCTCCAGCAACAGCTCGACGAG
TGCCGAAAACAAGTGGAAGGTTTGCCCACTGGCGAGGCAGTGAAGGCACT
TGAGACAAAGCTGGCCGCGTGTAAGGAGAGTGTCAAGAAATACAGACATC
AAGTAGCCAAGTTACAATCACTCGAACTTCAAGGCAGCGAGAAATGCGGT
GCCCTGGAAGGAGAGAAGAAACTTTTGAATGAGCAGATCGATTCAATGAA
AGCAGAGGCGACACGAATTGAAAACGAGGTTAAGAATCAAAGGGAAGAGG
CAGAAAAACAAGCAACACGAGCACAAAAAAAAGCAGTTGAAGCACAGAAA
AGCGCGTCGGAAGCCGAAGCAGTCGAACAAATCAAAAAACTGTTGGCAGC
CAAGGCAGAAGCACACAAAGCTGAGCTCAAAGAAAAAGAAGGGGTGTCAG
CAGCCTCGATAGCGCGGGCGACAGCAGAGGCAGAGCAGGCTCGGAAAGAG
GCCGATGAGGCAAAAGCGTTAACCCGCGCAGCACAACAAGAAGCCGCCGA
TGCTAAGAAGCAAGCCAGTGATTGTCAAGAAAAACTCGATAGTTTAAATC
AAAACGCTGGGACTGGAGGTGGGACTGGAGGCGCAAGTGGAGGCGCAAGT
GGAGGCGGAGGCGGAGGCGGAGGCGGAGGTGGGACTGGAGCTGGGACTGG
AAGTGGAGGCGGAGGCGGAGGTGGCAGCGGAGGCGGAGGCGGAGACGGAG
GCGGAGGCGGAGGTGGCAGCGGAGGTGGAGGCGGAGGTGCAGGCGTAGGT
GGAGACGAAAGTGGATTGAGTATTGAAGACATTCTTGCAGACTCAGATTG
GCTACAAACCTTCATGAACGCCGTGACACCAAAATATAATCAAGATGGAA
AATTCACTCACGGCCCTGGCAAAGGCACTTTAAAGACACACGTGGTGTCG
AAACTCGGTTTTGTTGGATCGAAGGACATGGTCAATCTCGGCAACCTTCT
TAGCGACAAAACGCCATCAGCAGACGAACCATCTCGAAAAAAGGAACAAC
GCGTTAAATACCATCAACAGAACTTCGCAACGAAAACTGCGAGAAACATC
ACACTTTACCGTAACACACCCCAAGCGAAAACGGTAAATCTGACAAATAC
GAAGGCTTTCCGTATCTTCCTCGGGATAAGATCACGTATAGTAGCACCTG
GCGGTAGTCTTCTCATCACACGCAACGAAAACGCCCGTCTGTTCTCAATG
ATTGTTGGTTATTTCGGATTGATCACTCCGAAAAGCGATGGGGTAGATAA
ACAGGTTCATTTGGAACCGAATGAGAGTGGGCAATTTACCCGGGAACTTC
TTAGTAAGGCTTCTTTTGATCTCTCAAATTTGTTCGTATGGATGTAA
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