mRNA_Ecto-sp8_S_contig11377.1744.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11377.1744.1
Unique NamemRNA_Ecto-sp8_S_contig11377.1744.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11377.1744.1 vs. uniprot
Match: D8LPH0_ECTSI (EsV-1-146 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPH0_ECTSI)

HSP 1 Score: 487 bits (1253), Expect = 7.440e-172
Identity = 248/321 (77.26%), Postives = 261/321 (81.31%), Query Frame = 1 
Query:    1 MTRWDCDVKLRRGVPCSFPAFHGWPEARQGLLAEGLVSFVFCPACEQWISGHHCCHSESPESGLDDSSSTCSS---------EYVVCSDDTPDTYFCHACKERIHLTYHKETKEWVYRECVEHDGEIVHKTCRDVAREKSPDSTGXXXXXXXXXXXCSMDPDVYVVCPRDTPDTHHCHLCQDRIHLEYRHEIEEWVYRDCVEHDGEIIHKTCRDVVFG---GSGGSGXXXXXXXXXXXXX-------------SSPLVESDAGGVYVVCTEGDSASSRCRLCYDRVHLKFLRQIDKWVYRDCVELDGEIVHKVCRNLAFDL 888
            MTRWDCDV+L RGVPCSFPAFHGWP+ARQGLLA+GLVSFVFCPAC QWISGHHCCHSESPESGLDDS STCSS         EYVVCSDDTPDTYFCHACK RIHLTY KE K WVYRECVEH GEI+HKTCRDV REK PDS G            S DPDVYVVC    PDT+HCHLCQDRIHL+YRHEIEEWVYRDCVEHDGEI+HK CRD+VFG   GS GSG  XXXXXXXXXXX             S PLV+S+AG VYVVCTE DSASSRCRLCY+RVHLKFL++IDKWVYRDCVELDGEIVHKVCRNLAFDL
Sbjct:    1 MTRWDCDVRLHRGVPCSFPAFHGWPDARQGLLADGLVSFVFCPACHQWISGHHCCHSESPESGLDDSGSTCSSDSRDWSSRSEYVVCSDDTPDTYFCHACKGRIHLTYLKEIKAWVYRECVEHKGEIMHKTCRDVGREKFPDSPGSTGSNGSTR---SKDPDVYVVCSNHAPDTYHCHLCQDRIHLQYRHEIEEWVYRDCVEHDGEILHKACRDLVFGDSSGSSGSGGFXXXXXXXXXXXXXXXXXXXXXXXHSEPLVDSEAG-VYVVCTERDSASSRCRLCYERVHLKFLQEIDKWVYRDCVELDGEIVHKVCRNLAFDL 317
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BLAST of mRNA_Ecto-sp8_S_contig11377.1744.1 vs. uniprot
Match: Q8QND6_ESV1K (EsV-1-146 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND6_ESV1K)

HSP 1 Score: 468 bits (1203), Expect = 1.980e-164
Identity = 243/318 (76.42%), Postives = 253/318 (79.56%), Query Frame = 1 
Query:    1 MTRWDCDVKLRRGVPCSFPAFHGWPEARQGLLAEGLVS-------FVFCPACEQWISGHHCCHSESPESGLDDSSSTCSSE---------YVVCSDDTPDTYFCHACKERIHLTYHKETKEWVYRECVEHDGEIVHKTCRDVAREKSPDSTGXXXXXXXXXXXCSMDPDVYVVCPRDTPDTHHCHLCQDRIHLEYRHEIEEWVYRDCVEHDGEIIHKTCRDVVFGGSGGSGXXXXXXXXXXXXX------SSPLVESDAGGVYVVCTEGDSASSRCRLCYDRVHLKFLRQIDKWVYRDCVELDGEIVHKVCRNLAFDL 888
            MTRWDCDVKLRRGVPCSFPAFHGWP ARQGLLAE +VS       FVFCPAC QWISGHHCCHSES    LDDS STCSSE         Y+VCSDDTPD Y CHACK RIHLTYHKE KEWVYRECVEHDGEI+HKTCRDV RE     TG            SMDP VYVVCP DTP T+HCHLC DR+HLEYRHE+EEWVYRDCVEHDGE++HK CRD VF GS    XXXXXXXXXXXXX      SSPLV+SDAG VYVVCTEGDSASSRC LCYDRVHLKFLRQIDKWVYRDCVELDGEIVHKVCRNLAF+L
Sbjct:    1 MTRWDCDVKLRRGVPCSFPAFHGWPRARQGLLAEDIVSSSTTVRRFVFCPACHQWISGHHCCHSESV---LDDSRSTCSSESRASSGRSEYLVCSDDTPDAYHCHACKGRIHLTYHKEMKEWVYRECVEHDGEIIHKTCRDVVREMLTGGTGSAL---------SMDPGVYVVCPSDTPYTYHCHLCMDRLHLEYRHEMEEWVYRDCVEHDGEVVHKLCRDAVFSGSSXXXXXXXXXXXXXXXXXXXXXXSSPLVDSDAG-VYVVCTEGDSASSRCHLCYDRVHLKFLRQIDKWVYRDCVELDGEIVHKVCRNLAFEL 305
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BLAST of mRNA_Ecto-sp8_S_contig11377.1744.1 vs. uniprot
Match: Q8QND7_ESV1K (EsV-1-145 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND7_ESV1K)

HSP 1 Score: 279 bits (714), Expect = 3.810e-90
Identity = 172/233 (73.82%), Postives = 187/233 (80.26%), Query Frame = -1 
Query:  211 SQIKSQVTTHLVYDLTVELYTVPINPFIYLAKELEMHTIVAQATPGTRRVAFRTHHIHAACVRLNQGAGTAGTSKTXXXXXXXXXXXXX------EHYVTTRLVYDFTVVLDAVPIHPFLYLVTILEVNAILAQVTMVGIWRVTRAYNVHVWVHRACGTSXXXXXXXXXXXXXLFTSDVTTRLVHDFTVVLNAFPINPFFRLLMVCEMNALLASVTKIGIWRVIRAYNILART 891
            SQ+KSQVTTHLVYDLTVELYTVPINPFIYLAKELEMHTIVAQ TPGTRRVAFR +HIHA CVR++QGA TAG    XXXXXXXXXXXXX      E+ V+T+ V+DFTVVL+AVPI+PFL+LVTILEV AI AQVTMVGI RVTRAYN+H  VHR  GT               FT+ VTTRLV+D TVVLNAFPINPFF LLMVCEMNA LASVT +GIWRVIRAY IL  T
Sbjct:   79 SQLKSQVTTHLVYDLTVELYTVPINPFIYLAKELEMHTIVAQVTPGTRRVAFRAYHIHA-CVRIHQGARTAGXXXXXXXXXXXXXXXXXXXXXXXENCVSTQFVHDFTVVLNAVPINPFLHLVTILEVKAIHAQVTMVGIRRVTRAYNIHARVHREGGTGSTGEH---------FTNYVTTRLVYDLTVVLNAFPINPFFHLLMVCEMNASLASVTMVGIWRVIRAYKILGTT 301
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11377.1744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LPH0_ECTSI7.440e-17277.26EsV-1-146 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QND6_ESV1K1.980e-16476.42EsV-1-146 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
Q8QND7_ESV1K3.810e-9073.82EsV-1-145 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11377contigEcto-sp8_S_contig11377:2068..2958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size891
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-146
Ec32 orthologEc-06_005410.1
Cds size891
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143213.377276-CDS-Ecto-sp8_S_contig11377:2067..29581681143213.377276-CDS-Ecto-sp8_S_contig11377:2067..2958Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11377 2068..2958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11377.1744.1prot_Ecto-sp8_S_contig11377.1744.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11377 2068..2958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11377.1744.1

>prot_Ecto-sp8_S_contig11377.1744.1 ID=prot_Ecto-sp8_S_contig11377.1744.1|Name=mRNA_Ecto-sp8_S_contig11377.1744.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=297bp
MTRWDCDVKLRRGVPCSFPAFHGWPEARQGLLAEGLVSFVFCPACEQWIS
GHHCCHSESPESGLDDSSSTCSSEYVVCSDDTPDTYFCHACKERIHLTYH
KETKEWVYRECVEHDGEIVHKTCRDVAREKSPDSTGSSGSAGSTGSTCSM
DPDVYVVCPRDTPDTHHCHLCQDRIHLEYRHEIEEWVYRDCVEHDGEIIH
KTCRDVVFGGSGGSGGFGSSSGFGSSSGSSPLVESDAGGVYVVCTEGDSA
SSRCRLCYDRVHLKFLRQIDKWVYRDCVELDGEIVHKVCRNLAFDL*
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mRNA from alignment at Ecto-sp8_S_contig11377:2068..2958+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11377.1744.1 ID=mRNA_Ecto-sp8_S_contig11377.1744.1|Name=mRNA_Ecto-sp8_S_contig11377.1744.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=891bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11377:2068..2958+ (Ectocarpus species8 EcLAC_412)
ATGACGAGGTGGGATTGCGACGTCAAGCTGCGCAGGGGTGTGCCGTGCTC
TTTCCCTGCCTTTCACGGGTGGCCTGAAGCGCGCCAGGGGTTGTTGGCCG
AAGGTCTGGTTTCCTTCGTGTTTTGCCCGGCATGTGAGCAGTGGATCTCC
GGGCACCACTGCTGTCACTCTGAATCTCCTGAATCCGGCCTGGATGATTC
CAGTTCCACCTGTTCGAGCGAGTATGTTGTATGCTCGGATGACACGCCAG
ATACCTATTTTTGTCACGCTTGCAAGGAGCGCATTCATCTCACATACCAT
AAGGAGACGAAAGAATGGGTTTATCGGGAATGCGTTGAGCACGACGGTGA
AATCGTGCACAAGACGTGTCGTGACGTCGCTCGTGAAAAGTCCCCCGATT
CCACCGGTTCCTCCGGTTCCGCTGGTTCCACTGGTTCCACATGCTCGATG
GACCCAGACGTGTACGTTGTATGCCCGCGTGACACGCCAGATACCCACCA
TTGTCACTTGTGCCAGGATCGCATTCACCTCGAGTATCGTCACGAGATAG
AGGAATGGGTGTATCGGGACTGCGTCGAGCACGACGGTGAAATCATACAC
AAGACGTGTCGTGACGTAGTGTTCGGTGGTTCCGGCGGTTCCGGTGGTTT
TGGAAGTTCCAGTGGTTTTGGAAGTTCCAGCGGTTCCAGCCCCCTGGTTG
AGTCGGACGCAGGCGGCGTGTATGTGGTGTGTACGGAAGGCGACTCTGCG
AGTTCCCGGTGTCGCCTGTGCTACGATCGTGTGCATCTCAAGTTCCTTCG
CCAGATAGATAAATGGGTTTATCGGGACTGTGTAGAGCTCGACGGTGAGA
TCGTACACAAGGTGTGTCGTAACCTGGCTTTTGATTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11377:2068..2958+

>mRNA_Ecto-sp8_S_contig11377.1744.1 ID=mRNA_Ecto-sp8_S_contig11377.1744.1|Name=mRNA_Ecto-sp8_S_contig11377.1744.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=891bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11377:2068..2958+ (Ectocarpus species8 EcLAC_412)
ATGACGAGGTGGGATTGCGACGTCAAGCTGCGCAGGGGTGTGCCGTGCTC
TTTCCCTGCCTTTCACGGGTGGCCTGAAGCGCGCCAGGGGTTGTTGGCCG
AAGGTCTGGTTTCCTTCGTGTTTTGCCCGGCATGTGAGCAGTGGATCTCC
GGGCACCACTGCTGTCACTCTGAATCTCCTGAATCCGGCCTGGATGATTC
CAGTTCCACCTGTTCGAGCGAGTATGTTGTATGCTCGGATGACACGCCAG
ATACCTATTTTTGTCACGCTTGCAAGGAGCGCATTCATCTCACATACCAT
AAGGAGACGAAAGAATGGGTTTATCGGGAATGCGTTGAGCACGACGGTGA
AATCGTGCACAAGACGTGTCGTGACGTCGCTCGTGAAAAGTCCCCCGATT
CCACCGGTTCCTCCGGTTCCGCTGGTTCCACTGGTTCCACATGCTCGATG
GACCCAGACGTGTACGTTGTATGCCCGCGTGACACGCCAGATACCCACCA
TTGTCACTTGTGCCAGGATCGCATTCACCTCGAGTATCGTCACGAGATAG
AGGAATGGGTGTATCGGGACTGCGTCGAGCACGACGGTGAAATCATACAC
AAGACGTGTCGTGACGTAGTGTTCGGTGGTTCCGGCGGTTCCGGTGGTTT
TGGAAGTTCCAGTGGTTTTGGAAGTTCCAGCGGTTCCAGCCCCCTGGTTG
AGTCGGACGCAGGCGGCGTGTATGTGGTGTGTACGGAAGGCGACTCTGCG
AGTTCCCGGTGTCGCCTGTGCTACGATCGTGTGCATCTCAAGTTCCTTCG
CCAGATAGATAAATGGGTTTATCGGGACTGTGTAGAGCTCGACGGTGAGA
TCGTACACAAGGTGTGTCGTAACCTGGCTTTTGATTTGTGA
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