mRNA_Ecto-sp8_S_contig11372.1737.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: D8LTG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG8_ECTSI) HSP 1 Score: 305 bits (780), Expect = 1.480e-98 Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1
Query: 1 AVAKLATVYWEMEQRVPKTSFGTEGCTRYRDMMSPEDIIPVFEGVFVASSDERRQFVMQSVGAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVSETFPQDPLPSVHPS 444
AVAKLATVYWEMEQRVPKTSFGTEGCTRYRDMMSPEDIIPVFEGVFVASSDERRQFVMQS+GAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVSETFPQD LP VHPS
Sbjct: 34 AVAKLATVYWEMEQRVPKTSFGTEGCTRYRDMMSPEDIIPVFEGVFVASSDERRQFVMQSIGAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVSETFPQDALPPVHPS 181
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0A6H5JRR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR5_9PHAE) HSP 1 Score: 293 bits (749), Expect = 1.870e-94 Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 1
Query: 1 AVAKLATVYWEMEQRVPKTSFGTEGCTRYRDMMSPEDIIPVFEGVFVASSDERRQFVMQSVGAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVSETFPQDPLP 429
AVAKLATVYWEMEQRVPKTSFGTEGCTRYRDMMSPEDIIP+FEGVFVASSDERRQ +MQS+GAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVSETFPQD LP
Sbjct: 80 AVAKLATVYWEMEQRVPKTSFGTEGCTRYRDMMSPEDIIPIFEGVFVASSDERRQTIMQSIGAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVSETFPQDALP 222
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0A7S4IRR6_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IRR6_9EUKA) HSP 1 Score: 73.2 bits (178), Expect = 2.440e-12 Identity = 41/121 (33.88%), Postives = 61/121 (50.41%), Query Frame = 1
Query: 43 RVPKTSFGTEGCTRYRDMMSPEDIIPVFEGVFVASSDERRQFVMQSVGAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAFHPHGMHYRAETGE--LFVVNHAYSQGGERIDVFKV 399
+V + S + C ++ ED V E + + SD+R + G E G L ++ + + K A L +E FP FHPHG+H + LFV+NHAY+ GGER+DVF+V
Sbjct: 28 KVLRVSQNADECQLLEGIVGAEDSAIVSERIVIFGSDDRMTLWEKKGGMEIVQNGSLVVVFAAENG--ETKVATLSLENFPTDVDFHPHGIHLLRNNNQMLLFVINHAYTAGGERVDVFEV 146
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0A4D9CTG9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTG9_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 9.530e-12 Identity = 41/119 (34.45%), Postives = 61/119 (51.26%), Query Frame = 1
Query: 106 EDIIPVFEGVFVASSDER-RQFVMQSVGAEAAPWGDLFAIWDVDTPGQDPKS----------------------AVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVF 393
EDI+ + +F+ +D+R R + G P G L A+++ + G+ + A + + FP+G AFHPHGM+Y T +LFV+NHAY +GGERIDVF
Sbjct: 8 EDIVTLTPSLFITGTDDRLRLWENPDFGPTRTPQGGLVALFE-EKEGEGLRKGGREGEMRXXXXXXXXXXXXRVASIPLLDFPKGVAFHPHGMYYHRSTSKLFVINHAYDKGGERIDVF 125
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: I2CS19_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS19_NANGC) HSP 1 Score: 67.4 bits (163), Expect = 9.940e-12 Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query: 253 KSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVS 402
+ A + + FP+G AFHPHGM+Y T +LFV+NHAY +GGERIDVF ++
Sbjct: 9 RVASIPLLDFPKGVAFHPHGMYYHRPTSKLFVINHAYDKGGERIDVFHLT 58
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0A6B2L681_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L681_9EUKA) HSP 1 Score: 66.6 bits (161), Expect = 4.790e-10 Identity = 49/125 (39.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 46 VPKTSFGTEGCTRY--RDMMSPEDIIPVFEGVFVASSDERRQFVMQSVGAEAA-PWGDLFAIWDVDTPGQDPKSAVLEIEGFP-EGNAFHPHGMHYRAETGE--LFVVNHAYSQGGERIDVFKVS 402
VP T T+GC R ++ ED ++GV + +D+R + +G A P G LF VD G + L + GFP + AFHPHG+ G L+VVNHAY++GGERI+VF VS
Sbjct: 33 VPLTYAPTDGCVRLTAEGLVGAEDFAE-YKGVLITGTDDR--ISLWELGTPAGTPSGGLFV---VDPVGDGVRR--LNLGGFPWDTLAFHPHGLFLHEHQGAHFLYVVNHAYAKGGERIEVFAVS 149
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0A7S4ER95_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ER95_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.800e-8 Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 253 KSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVS 402
K L I +PEG FHPHG++ R E L+V+NHAY +GGERIDVF ++
Sbjct: 112 KIQELPIINYPEGVNFHPHGIYIRKEDRTLYVINHAYEKGGERIDVFGIA 161
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0A448Z0G3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0G3_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 3.780e-8 Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 1
Query: 253 KSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKV 399
K L I +PE FHPHGM+ R E L+V+NHAY GGERIDVF V
Sbjct: 110 KIQELPIFNYPENIDFHPHGMYIRKEDSTLYVINHAYENGGERIDVFGV 158
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0A6B2L869_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L869_9EUKA) HSP 1 Score: 59.7 bits (143), Expect = 1.140e-7 Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 172 MQSVGAEAAPWGDLFAIWDVDTPGQDPKSAVLE---IEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVS 402
M SV + W + D G DPK+ ++ + FP+G FHPHG+ L+V+NHA+ +GGER++VFKV+
Sbjct: 1 MISVAEDTMGWWENAEPEDGGLFGIDPKTDAIKPLPLTNFPKGVPFHPHGLSIDPSRSFLYVINHAFDKGGERVEVFKVT 80
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0DR75_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DR75_PARTE) HSP 1 Score: 58.9 bits (141), Expect = 2.320e-7 Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 1
Query: 49 PKTSFGTEGCTRY--RDMMSPEDIIPVFEGVFVASSDERRQFVMQSVGAEAAPWGDLFAIWDVDTPGQDPKSAV-LEIEGFPEGNAFHPHGMHYRAET--GELFVVNHAYSQGGERIDVFKVSE 405
P T++ G +Y D+ PED+ + S Q V A+ P + I+ + + S + LE++ FP+ A + HG++ R + LFV+NHAY GGERI+VFK+ E
Sbjct: 28 PVTNYNEYGNCKYLKEDIRGPEDMTQYNSTTIIIGSGN-----FQKVYAQGKPELEQQGIYAILNSNKKNYSVLQLEVKNFPKDVALYMHGIYVRKQQDGNYLFVINHAYHNGGERIEVFKIDE 146 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig11372.1737.1 >prot_Ecto-sp8_S_contig11372.1737.1 ID=prot_Ecto-sp8_S_contig11372.1737.1|Name=mRNA_Ecto-sp8_S_contig11372.1737.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=148bp AVAKLATVYWEMEQRVPKTSFGTEGCTRYRDMMSPEDIIPVFEGVFVASSback to top mRNA from alignment at Ecto-sp8_S_contig11372:1019..2463- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig11372.1737.1 ID=mRNA_Ecto-sp8_S_contig11372.1737.1|Name=mRNA_Ecto-sp8_S_contig11372.1737.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1445bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11372:1019..2463- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11372:1019..2463- >mRNA_Ecto-sp8_S_contig11372.1737.1 ID=mRNA_Ecto-sp8_S_contig11372.1737.1|Name=mRNA_Ecto-sp8_S_contig11372.1737.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11372:1019..2463- (Ectocarpus species8 EcLAC_412)back to top |