mRNA_Ecto-sp8_S_contig11372.1737.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11372.1737.1
Unique NamemRNA_Ecto-sp8_S_contig11372.1737.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: D8LTG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG8_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 1.480e-98
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 1
Query:    1 AVAKLATVYWEMEQRVPKTSFGTEGCTRYRDMMSPEDIIPVFEGVFVASSDERRQFVMQSVGAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVSETFPQDPLPSVHPS 444
            AVAKLATVYWEMEQRVPKTSFGTEGCTRYRDMMSPEDIIPVFEGVFVASSDERRQFVMQS+GAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVSETFPQD LP VHPS
Sbjct:   34 AVAKLATVYWEMEQRVPKTSFGTEGCTRYRDMMSPEDIIPVFEGVFVASSDERRQFVMQSIGAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVSETFPQDALPPVHPS 181          
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0A6H5JRR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR5_9PHAE)

HSP 1 Score: 293 bits (749), Expect = 1.870e-94
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 1
Query:    1 AVAKLATVYWEMEQRVPKTSFGTEGCTRYRDMMSPEDIIPVFEGVFVASSDERRQFVMQSVGAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVSETFPQDPLP 429
            AVAKLATVYWEMEQRVPKTSFGTEGCTRYRDMMSPEDIIP+FEGVFVASSDERRQ +MQS+GAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVSETFPQD LP
Sbjct:   80 AVAKLATVYWEMEQRVPKTSFGTEGCTRYRDMMSPEDIIPIFEGVFVASSDERRQTIMQSIGAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVSETFPQDALP 222          
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0A7S4IRR6_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IRR6_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 2.440e-12
Identity = 41/121 (33.88%), Postives = 61/121 (50.41%), Query Frame = 1
Query:   43 RVPKTSFGTEGCTRYRDMMSPEDIIPVFEGVFVASSDERRQFVMQSVGAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAFHPHGMHYRAETGE--LFVVNHAYSQGGERIDVFKV 399
            +V + S   + C     ++  ED   V E + +  SD+R     +  G E    G L  ++  +    + K A L +E FP    FHPHG+H      +  LFV+NHAY+ GGER+DVF+V
Sbjct:   28 KVLRVSQNADECQLLEGIVGAEDSAIVSERIVIFGSDDRMTLWEKKGGMEIVQNGSLVVVFAAENG--ETKVATLSLENFPTDVDFHPHGIHLLRNNNQMLLFVINHAYTAGGERVDVFEV 146          
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0A4D9CTG9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTG9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 9.530e-12
Identity = 41/119 (34.45%), Postives = 61/119 (51.26%), Query Frame = 1
Query:  106 EDIIPVFEGVFVASSDER-RQFVMQSVGAEAAPWGDLFAIWDVDTPGQDPKS----------------------AVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVF 393
            EDI+ +   +F+  +D+R R +     G    P G L A+++ +  G+  +                       A + +  FP+G AFHPHGM+Y   T +LFV+NHAY +GGERIDVF
Sbjct:    8 EDIVTLTPSLFITGTDDRLRLWENPDFGPTRTPQGGLVALFE-EKEGEGLRKGGREGEMRXXXXXXXXXXXXRVASIPLLDFPKGVAFHPHGMYYHRSTSKLFVINHAYDKGGERIDVF 125          
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: I2CS19_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS19_NANGC)

HSP 1 Score: 67.4 bits (163), Expect = 9.940e-12
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:  253 KSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVS 402
            + A + +  FP+G AFHPHGM+Y   T +LFV+NHAY +GGERIDVF ++
Sbjct:    9 RVASIPLLDFPKGVAFHPHGMYYHRPTSKLFVINHAYDKGGERIDVFHLT 58          
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0A6B2L681_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L681_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 4.790e-10
Identity = 49/125 (39.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   46 VPKTSFGTEGCTRY--RDMMSPEDIIPVFEGVFVASSDERRQFVMQSVGAEAA-PWGDLFAIWDVDTPGQDPKSAVLEIEGFP-EGNAFHPHGMHYRAETGE--LFVVNHAYSQGGERIDVFKVS 402
            VP T   T+GC R     ++  ED    ++GV +  +D+R    +  +G  A  P G LF    VD  G   +   L + GFP +  AFHPHG+      G   L+VVNHAY++GGERI+VF VS
Sbjct:   33 VPLTYAPTDGCVRLTAEGLVGAEDFAE-YKGVLITGTDDR--ISLWELGTPAGTPSGGLFV---VDPVGDGVRR--LNLGGFPWDTLAFHPHGLFLHEHQGAHFLYVVNHAYAKGGERIEVFAVS 149          
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0A7S4ER95_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ER95_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.800e-8
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:  253 KSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVS 402
            K   L I  +PEG  FHPHG++ R E   L+V+NHAY +GGERIDVF ++
Sbjct:  112 KIQELPIINYPEGVNFHPHGIYIRKEDRTLYVINHAYEKGGERIDVFGIA 161          
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0A448Z0G3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0G3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.780e-8
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 1
Query:  253 KSAVLEIEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKV 399
            K   L I  +PE   FHPHGM+ R E   L+V+NHAY  GGERIDVF V
Sbjct:  110 KIQELPIFNYPENIDFHPHGMYIRKEDSTLYVINHAYENGGERIDVFGV 158          
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0A6B2L869_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L869_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 1.140e-7
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  172 MQSVGAEAAPWGDLFAIWDVDTPGQDPKSAVLE---IEGFPEGNAFHPHGMHYRAETGELFVVNHAYSQGGERIDVFKVS 402
            M SV  +   W +     D    G DPK+  ++   +  FP+G  FHPHG+        L+V+NHA+ +GGER++VFKV+
Sbjct:    1 MISVAEDTMGWWENAEPEDGGLFGIDPKTDAIKPLPLTNFPKGVPFHPHGLSIDPSRSFLYVINHAFDKGGERVEVFKVT 80          
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Match: A0DR75_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DR75_PARTE)

HSP 1 Score: 58.9 bits (141), Expect = 2.320e-7
Identity = 39/124 (31.45%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   49 PKTSFGTEGCTRY--RDMMSPEDIIPVFEGVFVASSDERRQFVMQSVGAEAAPWGDLFAIWDVDTPGQDPKSAV-LEIEGFPEGNAFHPHGMHYRAET--GELFVVNHAYSQGGERIDVFKVSE 405
            P T++   G  +Y   D+  PED+        +  S        Q V A+  P  +   I+ +    +   S + LE++ FP+  A + HG++ R +     LFV+NHAY  GGERI+VFK+ E
Sbjct:   28 PVTNYNEYGNCKYLKEDIRGPEDMTQYNSTTIIIGSGN-----FQKVYAQGKPELEQQGIYAILNSNKKNYSVLQLEVKNFPKDVALYMHGIYVRKQQDGNYLFVINHAYHNGGERIEVFKIDE 146          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11372.1737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LTG8_ECTSI1.480e-9897.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRR5_9PHAE1.870e-9496.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4IRR6_9EUKA2.440e-1233.88Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A4D9CTG9_9STRA9.530e-1234.45Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
I2CS19_NANGC9.940e-1256.00Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A6B2L681_9EUKA4.790e-1039.20Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A7S4ER95_9STRA2.800e-854.00Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448Z0G3_9STRA3.780e-857.14Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6B2L869_9EUKA1.140e-737.50Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0DR75_PARTE2.320e-731.45Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11372contigEcto-sp8_S_contig11372:1019..2463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size447
Hectar predicted targeting categoryother localisation
Exons3
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143212.8821738-CDS-Ecto-sp8_S_contig11372:1019..12171681143212.8821738-CDS-Ecto-sp8_S_contig11372:1019..1217Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11372 1020..1217 -
1681143212.8897884-CDS-Ecto-sp8_S_contig11372:1903..20751681143212.8897884-CDS-Ecto-sp8_S_contig11372:1903..2075Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11372 1904..2075 -
1681143212.900848-CDS-Ecto-sp8_S_contig11372:2389..24631681143212.900848-CDS-Ecto-sp8_S_contig11372:2389..2463Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11372 2390..2463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11372.1737.1prot_Ecto-sp8_S_contig11372.1737.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11372 1020..2463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11372.1737.1

>prot_Ecto-sp8_S_contig11372.1737.1 ID=prot_Ecto-sp8_S_contig11372.1737.1|Name=mRNA_Ecto-sp8_S_contig11372.1737.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=148bp
AVAKLATVYWEMEQRVPKTSFGTEGCTRYRDMMSPEDIIPVFEGVFVASS
DERRQFVMQSVGAEAAPWGDLFAIWDVDTPGQDPKSAVLEIEGFPEGNAF
HPHGMHYRAETGELFVVNHAYSQGGERIDVFKVSETFPQDPLPSVHPS
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mRNA from alignment at Ecto-sp8_S_contig11372:1019..2463-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11372.1737.1 ID=mRNA_Ecto-sp8_S_contig11372.1737.1|Name=mRNA_Ecto-sp8_S_contig11372.1737.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1445bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11372:1019..2463- (Ectocarpus species8 EcLAC_412)
GCCGTTGCCAAGCTCGCGACGGTGTACTGGGAGATGGAGCAGCGGGTGCC TAAGACGTCCTTCGGGACGGAAGGGTGAGATTGCGGCGAGTTTAGGTTGG GGCTGCGGCGATTTTCTCAGGCAGGCTCATCACTGCTGCTGTTGCTCTTG AACCCTCTATGACCGCCATGCTGTCTGAGAAGTCGTCTCGCCTACGTCCG CAGCCGCCGCGCCCCGCACGAGCGAGCCTGCCGCAAGCGCCTGCTTGCAG CTGTGCACCATCTCGAACCGCGTGAAGGTTTGCGCCCCTCTTGCGTATTT CTCGCCGGCGTTTGTCGTCCGTCACAAATTTAACTTTTACTCACCTCACC TTTCCCGATGCCTCCGCGAAATAACGCTTCCTTGCCAGGTGCACTCGTTA CCGGGACATGATGTCCCCTGAGGACATAATCCCGGTCTTCGAAGGCGTGT TCGTAGCCTCCAGCGACGAGCGCAGGCAGTTCGTGATGCAGTCTGTCGGG GCTGAGGCTGCACCCTGGGGCGACCTGTTCGCCATCTGGGATGTCGACAC TCCTGGGCAGGTATATGCATGGTGTCCCACACGCACGGGTGCCGTTTCGT TGTTATTCCCGCAACCTCAATATTTTAGTGTTTTCCCCTCCAGCATGATG CTCAAGCTTTTTCACCGATACAATCGAGTGTCTGTACAGGTAGTTCCCGT CCAATCATCTTCCGAGCTGTTGACACCTATAACGTATCTTAAGCTGTCCC CGATTCAGGAGGAAAAGTTAACACACATCTGTGTTTTCAGGTCGTTCACA GTGGAGACTGATTGTTCGGGGAGCTGTTCGACTTTTTTCCAGTGGCTGTC GACTGTTGACCTGTTGAGAGCAGCAATCTACCGCTTCGCTTGAAAACAAC GACTGAAAAACGCACGTTGGAAGGCACTACTGCTGTGTGGGTGTGTTTGC GACACGTTTGGCGCAACAAAAACACCGTGTTTTCTTTTCGATTTTCTGTG GGGAGTAACAATGCTCACTTTCAGCTTCTCCGTACCCCAAATCAACCAGA ATGCCGTGCCGTTGCGACAGGAGCAAGGGAAATATCCAACCCACAACCCA TACGAGAAAATGGAAGACGAAGTTTACTCAGATGCATGTTGCACCCAATA TCGTGGCGCCAACCAAGCTCAACCCCGGCCCCTCCCGTTTGTCCCCTCCT CGGTGTGATCGCGCAATGCCCACCACGACGCCCGTCTGGCCCACAGGACC CCAAATCAGCGGTGCTGGAAATCGAAGGGTTTCCAGAGGGGAATGCGTTT CACCCCCACGGTATGCACTACCGTGCCGAAACCGGGGAGCTGTTCGTGGT GAACCATGCCTACTCCCAGGGAGGGGAGCGGATAGACGTGTTCAAGGTGT CGGAGACCTTCCCGCAGGACCCCCTGCCGTCTGTGCACCCTTCCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11372:1019..2463-

>mRNA_Ecto-sp8_S_contig11372.1737.1 ID=mRNA_Ecto-sp8_S_contig11372.1737.1|Name=mRNA_Ecto-sp8_S_contig11372.1737.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11372:1019..2463- (Ectocarpus species8 EcLAC_412)
GCCGTTGCCAAGCTCGCGACGGTGTACTGGGAGATGGAGCAGCGGGTGCC
TAAGACGTCCTTCGGGACGGAAGGGTGCACTCGTTACCGGGACATGATGT
CCCCTGAGGACATAATCCCGGTCTTCGAAGGCGTGTTCGTAGCCTCCAGC
GACGAGCGCAGGCAGTTCGTGATGCAGTCTGTCGGGGCTGAGGCTGCACC
CTGGGGCGACCTGTTCGCCATCTGGGATGTCGACACTCCTGGGCAGGACC
CCAAATCAGCGGTGCTGGAAATCGAAGGGTTTCCAGAGGGGAATGCGTTT
CACCCCCACGGTATGCACTACCGTGCCGAAACCGGGGAGCTGTTCGTGGT
GAACCATGCCTACTCCCAGGGAGGGGAGCGGATAGACGTGTTCAAGGTGT
CGGAGACCTTCCCGCAGGACCCCCTGCCGTCTGTGCACCCTTCC
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