mRNA_Ecto-sp8_S_contig11356.1723.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11356.1723.1
Unique NamemRNA_Ecto-sp8_S_contig11356.1723.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig11356.1723.1 vs. uniprot
Match: A0A6H5KL00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL00_9PHAE)

HSP 1 Score: 306 bits (785), Expect = 2.250e-104
Identity = 145/151 (96.03%), Postives = 148/151 (98.01%), Query Frame = 1
Query:   85 FVLQLCAFHNDKHGTSLTPESFNSYYFHEVWGGTRAEADAKMVDFFKTPYFLDGIPPLAGAAEVLRKHSRSLTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECASAGIRALLF 537
            FVLQLC FHNDKHGTSLTPESFNSYYFHEVWGGTRAEADAKMV+FFK+PYFLDGIPPLAGAAEVLRKHSRSL FYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNT YATECASAGIR+LLF
Sbjct:    2 FVLQLCTFHNDKHGTSLTPESFNSYYFHEVWGGTRAEADAKMVEFFKSPYFLDGIPPLAGAAEVLRKHSRSLNFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTTYATECASAGIRSLLF 152          
BLAST of mRNA_Ecto-sp8_S_contig11356.1723.1 vs. uniprot
Match: D7FZT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZT5_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 2.550e-71
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 1
Query:  208 MVDFFKTPYFLDGIPPLAGAAEVLRKHSRSLTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECASAGIRALLFGE 543
            M++FFKTPYFLDGIPPLAGAAEVLRKHSR+LTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECASAGIR LLFG+
Sbjct:    1 MIEFFKTPYFLDGIPPLAGAAEVLRKHSRTLTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECASAGIRTLLFGD 112          
BLAST of mRNA_Ecto-sp8_S_contig11356.1723.1 vs. uniprot
Match: A0A6J1JK81_CUCMA (uncharacterized protein LOC111485341 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1JK81_CUCMA)

HSP 1 Score: 177 bits (448), Expect = 1.100e-51
Identity = 83/169 (49.11%), Postives = 118/169 (69.82%), Query Frame = 1
Query:   31 SSRNKPVIAVDLDEVLGEFVLQLCAFHNDKHGTSLTPESFNSYYFHEVWGGTRAEADAKMVDFFKTPYFLDGIPPLAGAAEVLRKHSRSLTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECASAGIRALLF 537
            SSR+K V+AVD+DEVLG FV  L  F  D++ ++ +   ++ Y F  +W  +R EA+ ++ +FFKTPYF  GI P+ GA  +L K SR     +VTSRQ++++ HT +WID HYPG+F  + FGNHF+ +G  RSK ++C+ +GA ++IDDN +YA ECA AGIR LLF
Sbjct:  109 SSRDKLVVAVDIDEVLGNFVSALNKFVADQYSSNHSVSEYHVYEFFRIWNCSRDEANIRVHEFFKTPYFQSGIWPIPGAQSMLLKLSRFCHLSVVTSRQNAIKEHTLKWIDRHYPGLFQEIHFGNHFALDGESRSKAEICKSLGASVLIDDNPRYAIECAEAGIRVLLF 277          
BLAST of mRNA_Ecto-sp8_S_contig11356.1723.1 vs. uniprot
Match: UPI0011D1A36E (uncharacterized protein LOC115671235 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D1A36E)

HSP 1 Score: 176 bits (446), Expect = 6.780e-51
Identity = 83/168 (49.40%), Postives = 114/168 (67.86%), Query Frame = 1
Query:   34 SRNKPVIAVDLDEVLGEFVLQLCAFHNDKHGTSLTPESFNSYYFHEVWGGTRAEADAKMVDFFKTPYFLDGIPPLAGAAEVLRKHSRSLTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECASAGIRALLF 537
            S  K V+AVD+DEVLG FV  L  F  D+  ++ +   ++ Y F ++WG +R EAD ++ +FFKTPYF  GI PL GA  VL K +R   F +VTSRQ++++ HT  WID HYPG+F  + FGNHF+  G  R K ++CR +GA+++IDDN +YA ECA  GI+ LLF
Sbjct:  155 SPEKIVVAVDIDEVLGNFVSALNRFIADRFSSNHSVSEYHVYEFFKIWGCSRNEADLRVHEFFKTPYFKKGIHPLPGAQRVLHKLARHCKFSVVTSRQNAIKDHTIEWIDKHYPGLFEEIHFGNHFALNGESRPKSEICRSLGAKVLIDDNPRYAIECADVGIKVLLF 322          
BLAST of mRNA_Ecto-sp8_S_contig11356.1723.1 vs. uniprot
Match: A0A803NUY5_CANSA (Uncharacterized protein n=5 Tax=Cannabis sativa TaxID=3483 RepID=A0A803NUY5_CANSA)

HSP 1 Score: 174 bits (441), Expect = 4.070e-50
Identity = 80/167 (47.90%), Postives = 116/167 (69.46%), Query Frame = 1
Query:   37 RNKPVIAVDLDEVLGEFVLQLCAFHNDKHGTSLTPESFNSYYFHEVWGGTRAEADAKMVDFFKTPYFLDGIPPLAGAAEVLRKHSRSLTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECASAGIRALLF 537
            R K  +AVD+DEVLG FV  L  F  D++ ++ +   ++ Y F ++W  +R EAD ++ +FFKTPYF  GI PL GA + + K SR  +  +VTSRQ++++ HT +WI+ H+PG+F  + FGNHF+  GA R K D+CR +GA+++IDDN +YA ECA+ GIR LLF
Sbjct:  159 REKIAVAVDVDEVLGNFVSALNRFIADRYSSNHSVSEYHVYEFFKIWNCSRDEADIRVHEFFKTPYFKTGIHPLPGAQKAIHKLSRFCSLSVVTSRQNAIKDHTIQWIEEHFPGLFQEIHFGNHFALNGASRPKSDICRSLGAKVLIDDNPRYAIECANVGIRVLLF 325          
BLAST of mRNA_Ecto-sp8_S_contig11356.1723.1 vs. uniprot
Match: A0A6P8CHT5_PUNGR (uncharacterized protein LOC116197610 n=3 Tax=Punica granatum TaxID=22663 RepID=A0A6P8CHT5_PUNGR)

HSP 1 Score: 173 bits (439), Expect = 4.360e-50
Identity = 82/170 (48.24%), Postives = 117/170 (68.82%), Query Frame = 1
Query:   28 SSSRNKPVIAVDLDEVLGEFVLQLCAFHNDKHGTSLTPESFNSYYFHEVWGGTRAEADAKMVDFFKTPYFLDGIPPLAGAAEVLRKHSRSLTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECASAGIRALLF 537
            S+S  K V+AVD+DEVLG FV  L  F  D++ ++ +   ++ Y F+++W  +R EAD ++ +FFKTPYF  GI P+ GA   L K S      +VTSRQ++++ HT RWI+ HYPG+F  + FGNHF+ +G  R K ++CR +GA+++IDDN +YA ECAS GIR LLF
Sbjct:  131 STSPEKIVVAVDVDEVLGNFVSALNRFIADRYSSNHSVSEYHVYEFYKIWNCSRDEADLRVHEFFKTPYFRMGIHPIPGARTALHKLSSFCKLSVVTSRQNAIKDHTIRWIEKHYPGLFHEIHFGNHFALDGVSRPKSEICRSLGAKVLIDDNPRYAIECASVGIRVLLF 300          
BLAST of mRNA_Ecto-sp8_S_contig11356.1723.1 vs. uniprot
Match: UPI001FB1504F (uncharacterized protein LOC124911385 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB1504F)

HSP 1 Score: 172 bits (437), Expect = 6.080e-50
Identity = 83/175 (47.43%), Postives = 119/175 (68.00%), Query Frame = 1
Query:   13 GSSSGSSSRNKPVIAVDLDEVLGEFVLQLCAFHNDKHGTSLTPESFNSYYFHEVWGGTRAEADAKMVDFFKTPYFLDGIPPLAGAAEVLRKHSRSLTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECASAGIRALLF 537
            G+S+  SS +K V+AVD+DEVLG FV  L  F  D++  + +   ++ Y F ++W  TR EA+ ++ +FFKTPYF  GI P+ GA E L+K SR   F +VTSRQ++++  T  WI+ HYPG+F  + FGNHF  EG  R+K ++C  +GA+++IDDN +YA ECA AG+  LLF
Sbjct:  112 GTSNDQSSLDKVVVAVDVDEVLGNFVSTLNLFIADRYSLNHSVSEYHVYEFAKIWNCTRDEANIRVHEFFKTPYFKRGIQPIPGAQEALQKLSRFCNFSVVTSRQNAIKDDTIEWIEKHYPGLFQDIHFGNHFCLEGQSRTKSEICSSVGAKILIDDNPRYAAECAEAGMGVLLF 286          
BLAST of mRNA_Ecto-sp8_S_contig11356.1723.1 vs. uniprot
Match: A0A6J1D1L1_MOMCH (uncharacterized protein LOC111016509 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1D1L1_MOMCH)

HSP 1 Score: 173 bits (438), Expect = 6.480e-50
Identity = 81/169 (47.93%), Postives = 116/169 (68.64%), Query Frame = 1
Query:   31 SSRNKPVIAVDLDEVLGEFVLQLCAFHNDKHGTSLTPESFNSYYFHEVWGGTRAEADAKMVDFFKTPYFLDGIPPLAGAAEVLRKHSRSLTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECASAGIRALLF 537
            SSR+K ++AVD+DEVLG FV  L  F  D++ ++ +   ++ Y F  +W  +R EA+ ++ +FFKTPYF  GI P+ GA   L K SR     +VTSRQ++++ HT  WI+ HYPG+F  + FGNHF+ +G  RSK ++C+ +GA ++IDDN +YA ECA AGIR LLF
Sbjct:  133 SSRDKLIVAVDIDEVLGNFVSALNKFVADRYSSNHSVSEYHVYEFFRIWKCSRDEANVRVHEFFKTPYFKTGIWPIPGAQSTLLKLSRFCHLSVVTSRQNAIKDHTLEWIEKHYPGLFQEIHFGNHFALDGESRSKAEICKSLGASVLIDDNPRYAIECAEAGIRVLLF 301          
BLAST of mRNA_Ecto-sp8_S_contig11356.1723.1 vs. uniprot
Match: A0A6P5ZGW3_DURZI (uncharacterized protein LOC111300391 isoform X1 n=2 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5ZGW3_DURZI)

HSP 1 Score: 172 bits (435), Expect = 1.150e-49
Identity = 78/166 (46.99%), Postives = 111/166 (66.87%), Query Frame = 1
Query:   40 NKPVIAVDLDEVLGEFVLQLCAFHNDKHGTSLTPESFNSYYFHEVWGGTRAEADAKMVDFFKTPYFLDGIPPLAGAAEVLRKHSRSLTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECASAGIRALLF 537
            NKP +AVD+DEVLG FV  L  F  D++  + +   ++ Y F +VW  +R EAD ++ +FFKTPYF  GI P+ GA   + K SR     +VTSRQ+ ++ HT  W++ HYPG+F  + FGNHF+  G  R K ++CR++G++++IDDN +YA ECA  GIR LLF
Sbjct:  115 NKPAVAVDVDEVLGNFVSALNKFIADRYSLNHSVSEYHVYEFFKVWNCSRDEADIRVHEFFKTPYFKKGIDPIPGAQRAIHKLSRFCNLSVVTSRQNVIKDHTIEWLEKHYPGLFQEIHFGNHFALGGESRPKSEICRLLGSKILIDDNPRYAVECAQVGIRVLLF 280          
BLAST of mRNA_Ecto-sp8_S_contig11356.1723.1 vs. uniprot
Match: UPI001CF98AB3 (uncharacterized protein LOC123195153 n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CF98AB3)

HSP 1 Score: 172 bits (435), Expect = 1.820e-49
Identity = 80/165 (48.48%), Postives = 112/165 (67.88%), Query Frame = 1
Query:   43 KPVIAVDLDEVLGEFVLQLCAFHNDKHGTSLTPESFNSYYFHEVWGGTRAEADAKMVDFFKTPYFLDGIPPLAGAAEVLRKHSRSLTFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLCRMIGAEMIIDDNTKYATECASAGIRALLF 537
            K  +AVD+DEVLG FV  L  F  D++ ++ +   ++ Y F ++W  +R EAD ++ +FFKTPYF  GI P+ GA + L K SR     +VTSRQ+ ++ HT  WI+ HYPG+F  + FGNHF+ +G  R K ++CR +GA+++IDDN KYA ECA AGIR LLF
Sbjct:  138 KVAVAVDVDEVLGNFVSALNRFIADRYSSNHSFSEYHVYEFFKIWNCSRDEADIRVHEFFKTPYFKTGIHPIPGAQKALHKLSRFCNLSVVTSRQNVIKDHTIEWIEKHYPGLFEEIHFGNHFALDGTSRPKSEICRSLGAKILIDDNPKYAVECADAGIRVLLF 302          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11356.1723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL00_9PHAE2.250e-10496.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZT5_ECTSI2.550e-7195.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6J1JK81_CUCMA1.100e-5149.11uncharacterized protein LOC111485341 n=3 Tax=Cucur... [more]
UPI0011D1A36E6.780e-5149.40uncharacterized protein LOC115671235 n=1 Tax=Syzyg... [more]
A0A803NUY5_CANSA4.070e-5047.90Uncharacterized protein n=5 Tax=Cannabis sativa Ta... [more]
A0A6P8CHT5_PUNGR4.360e-5048.24uncharacterized protein LOC116197610 n=3 Tax=Punic... [more]
UPI001FB1504F6.080e-5047.43uncharacterized protein LOC124911385 n=1 Tax=Impat... [more]
A0A6J1D1L1_MOMCH6.480e-5047.93uncharacterized protein LOC111016509 n=1 Tax=Momor... [more]
A0A6P5ZGW3_DURZI1.150e-4946.99uncharacterized protein LOC111300391 isoform X1 n=... [more]
UPI001CF98AB31.820e-4948.48uncharacterized protein LOC123195153 n=1 Tax=Mangi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11356contigEcto-sp8_S_contig11356:4737..5279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score228.0
Seed ortholog evalue3.5e-57
Seed eggNOG ortholog2880.D7FZT5
Model size543
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
EggNOG OGs28N75@1,2QUSF@2759
Cds size543
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143212.077271-CDS-Ecto-sp8_S_contig11356:4736..52791681143212.077271-CDS-Ecto-sp8_S_contig11356:4736..5279Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11356 4737..5279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11356.1723.1prot_Ecto-sp8_S_contig11356.1723.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11356 4737..5279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11356.1723.1

>prot_Ecto-sp8_S_contig11356.1723.1 ID=prot_Ecto-sp8_S_contig11356.1723.1|Name=mRNA_Ecto-sp8_S_contig11356.1723.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=181bp
GSSSGSSSGSSSRNKPVIAVDLDEVLGEFVLQLCAFHNDKHGTSLTPESF
NSYYFHEVWGGTRAEADAKMVDFFKTPYFLDGIPPLAGAAEVLRKHSRSL
TFYLVTSRQDSLQAHTKRWIDAHYPGIFAGLRFGNHFSTEGAVRSKPDLC
RMIGAEMIIDDNTKYATECASAGIRALLFGE
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mRNA from alignment at Ecto-sp8_S_contig11356:4737..5279+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11356.1723.1 ID=mRNA_Ecto-sp8_S_contig11356.1723.1|Name=mRNA_Ecto-sp8_S_contig11356.1723.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=543bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11356:4737..5279+ (Ectocarpus species8 EcLAC_412)
GGCAGCAGCAGCGGCAGCAGCAGCGGCAGCAGCAGCCGCAACAAACCGGT CATCGCGGTCGACCTTGACGAGGTCCTGGGCGAGTTCGTCCTCCAGCTGT GCGCCTTCCACAACGACAAGCACGGCACCTCCCTCACCCCGGAGAGCTTC AACAGCTACTACTTCCACGAGGTCTGGGGAGGCACAAGGGCGGAGGCGGA CGCGAAGATGGTCGATTTCTTCAAGACTCCCTACTTCCTGGACGGGATAC CCCCCCTGGCCGGCGCTGCGGAGGTCCTTCGGAAGCACTCGCGGAGCCTT ACCTTCTACTTGGTCACCTCCCGACAGGACTCGCTGCAGGCCCACACGAA AAGGTGGATCGACGCCCACTACCCCGGGATATTCGCCGGGCTCCGGTTCG GCAACCATTTCTCGACGGAGGGAGCGGTGCGGTCGAAGCCCGACCTCTGC AGGATGATCGGCGCCGAGATGATCATCGACGACAACACCAAGTACGCCAC AGAGTGCGCCTCTGCAGGGATCAGGGCGCTGTTGTTCGGTGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11356:4737..5279+

>mRNA_Ecto-sp8_S_contig11356.1723.1 ID=mRNA_Ecto-sp8_S_contig11356.1723.1|Name=mRNA_Ecto-sp8_S_contig11356.1723.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11356:4737..5279+ (Ectocarpus species8 EcLAC_412)
GGCAGCAGCAGCGGCAGCAGCAGCGGCAGCAGCAGCCGCAACAAACCGGT
CATCGCGGTCGACCTTGACGAGGTCCTGGGCGAGTTCGTCCTCCAGCTGT
GCGCCTTCCACAACGACAAGCACGGCACCTCCCTCACCCCGGAGAGCTTC
AACAGCTACTACTTCCACGAGGTCTGGGGAGGCACAAGGGCGGAGGCGGA
CGCGAAGATGGTCGATTTCTTCAAGACTCCCTACTTCCTGGACGGGATAC
CCCCCCTGGCCGGCGCTGCGGAGGTCCTTCGGAAGCACTCGCGGAGCCTT
ACCTTCTACTTGGTCACCTCCCGACAGGACTCGCTGCAGGCCCACACGAA
AAGGTGGATCGACGCCCACTACCCCGGGATATTCGCCGGGCTCCGGTTCG
GCAACCATTTCTCGACGGAGGGAGCGGTGCGGTCGAAGCCCGACCTCTGC
AGGATGATCGGCGCCGAGATGATCATCGACGACAACACCAAGTACGCCAC
AGAGTGCGCCTCTGCAGGGATCAGGGCGCTGTTGTTCGGTGAG
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