mRNA_Ecto-sp8_S_contig11356.1722.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11356.1722.1
Unique NamemRNA_Ecto-sp8_S_contig11356.1722.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11356.1722.1 vs. uniprot
Match: D7FZT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZT4_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 2.220e-67
Identity = 171/236 (72.46%), Postives = 172/236 (72.88%), Query Frame = 1 
Query:   79 MSQSRVNLATAKRELAERRDEANLCMVELKHAQEVLAAGGTGPKVLSVTVQEVFGPITVDRVAVRPDASPAQEKVVAQGIPCTFPLDAAVESFDLVLMAENDSDAGATKSAAVDQASASKEDSSQLAETAAVAVAGDGHETDEVVISAEDAAEAVEAEAEAAATAAVPDAXXXXXXXXXXXXXXXXAAAGG-----VPGQGNDAEEELHDASGAAAPVADAAEAPVVGETEAVGAE 771
            MSQSRVNLATAKRELAERRDEANLCMVELKHAQEVLAAGGTGPKVLSV                           VAQGIPCTFPLDAAVESFDLVLMAENDS AGATKSAAVDQAS S+EDSSQLAE AAVAV GDGHETDEVVISAEDAA                  XXXXXXXXXXXXXXXX          V  QGNDAEEE HD SGAAAPVADAAEAPV GETEAVGAE
Sbjct:    1 MSQSRVNLATAKRELAERRDEANLCMVELKHAQEVLAAGGTGPKVLSV---------------------------VAQGIPCTFPLDAAVESFDLVLMAENDSGAGATKSAAVDQASVSQEDSSQLAEAAAVAVPGDGHETDEVVISAEDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSEQGNDAEEEFHDDSGAAAPVADAAEAPVAGETEAVGAE 209
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11356.1722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZT4_ECTSI2.220e-6772.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11356contigEcto-sp8_S_contig11356:1811..3841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size965
Hectar predicted targeting categoryother localisation
Exons3
Cds size885
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143212.0216167-CDS-Ecto-sp8_S_contig11356:1810..24731681143212.0216167-CDS-Ecto-sp8_S_contig11356:1810..2473Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11356 1811..2473 -
1681143212.029781-CDS-Ecto-sp8_S_contig11356:2851..29321681143212.029781-CDS-Ecto-sp8_S_contig11356:2851..2932Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11356 2852..2932 -
1681143212.0392616-CDS-Ecto-sp8_S_contig11356:3622..37631681143212.0392616-CDS-Ecto-sp8_S_contig11356:3622..3763Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11356 3623..3763 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143212.0491-UTR-Ecto-sp8_S_contig11356:3763..38411681143212.0491-UTR-Ecto-sp8_S_contig11356:3763..3841Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11356 3764..3841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11356.1722.1prot_Ecto-sp8_S_contig11356.1722.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11356 1811..3763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11356.1722.1

>prot_Ecto-sp8_S_contig11356.1722.1 ID=prot_Ecto-sp8_S_contig11356.1722.1|Name=mRNA_Ecto-sp8_S_contig11356.1722.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=295bp
MSQSRVNLATAKRELAERRDEANLCMVELKHAQEVLAAGGTGPKVLSVTV
QEVFGPITVDRVAVRPDASPAQEKVVAQGIPCTFPLDAAVESFDLVLMAE
NDSDAGATKSAAVDQASASKEDSSQLAETAAVAVAGDGHETDEVVISAED
AAEAVEAEAEAAATAAVPDAAEPGEAGVDEVATAAAAAAGGVPGQGNDAE
EELHDASGAAAPVADAAEAPVVGETEAVGAEAGQGETAESEAAGEVDEAK
EATDEASPVVTGTTDEESNANVADAATTPASAAAAAAAAAGEEVA
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mRNA from alignment at Ecto-sp8_S_contig11356:1811..3841-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11356.1722.1 ID=mRNA_Ecto-sp8_S_contig11356.1722.1|Name=mRNA_Ecto-sp8_S_contig11356.1722.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2031bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11356:1811..3841- (Ectocarpus species8 EcLAC_412)
ATCAGCAGAGCAGCGCACGGCGACAGCTGTCCACGGGGGTGAATTGAGTA
AAGCCTAGCCCACGCACACCTATCGATCATGTCCCAGTCCCGCGTGAACC
TGGCGACAGCCAAGCGGGAGCTGGCGGAGCGCCGAGACGAGGCGAACCTG
TGTATGGTGGAGCTGAAGCACGCGCAGGAGGTGCTGGCCGCTGGGGGCAC
AGGGCCCAAGGTTCTGTCGGTGAGAGAACGAGAGAGAGACAGAGAGCACT
GCGACGAGTGGATTGCTTTTTACCGAATCCCTGATCGGCTGCTTGATGAG
CCGTTGCATTGCGCGCCTTGTGTACGGTACGGCCTTCAATCAAAACTTGC
GGTGAATAAAACTCGTCTCTCCCTCCGAACTCCGCGCTGTGCGTGCGGTC
GTGTTCGTCCACTCGCCGGGGAGGAAAGACACCTATAGACTTCTCCAGCA
CATTTCTTGTGTTGTTGTGCTGCCAGGACACACCCGGTTGCGGCCGCCAT
TTTGCCCGTCAATCTTGCCCTGCAACGCGCTTGATCGCTCCCGAACACGC
CTTGGAAAAGCTCATCTACACCAGCCGTCCGTGAGAGCTCCCTCAAGATT
TTTCAGAGACAGCCTACGGAGTGGTACAGCAGTAAAGTACATGCGTACGA
TCACGAACACCACGTGCATCGTCGAAATATGCCACACCTACACATACATG
CATGCATGCATGAGTCATAAGTTGCCCGTGCTAATTCACTGTTGTGCAGC
ACACATACGTGTTCCGTGAGTGCCCTTTGTGTGTCTGGTGTTTTTTTTTT
GCTTTTTTCACACACCGGTTAATTTCTCGAACCTCGAATCCCTGATTCCG
CCGCGTTTCTTGTCCGACGCTCGGGCACTCGGCTTCCGTGTGGGGAAAAC
GACAACAAGGTTACGGTGCAAGAGGTATTCGGCCCGATCACGGTGGACAG
GGTAGCAGTTCGTCCAGACGCTTCACCAGCGCAGGAAAAGGTATGGGAGA
TATTTAAGTACCACGGCATTTGGCTGGGCGGCAAGCGGGGTCTCACGTCG
GGGAGGACCACTGGCGGAGTCTTGAAAAGACCTGCTCGACTTGTTGTTTC
ACCCAGCGTTTCTCGGGGGATTGGTGTTACAGGGATTGGATTGGATTAGA
CTGCGGGATGCTTGAATGGGAGTTGACAGGCTTACTCGCACAACAACTCG
AGCCAACCATATGAATGTATTATCATGGTAAGATCAAGTGCACCAGGGTA
CCTCTGGTTCTCCTTTCCTGATATGCGTGTTTTGTATCGACTTCCTCTTG
CTCTCTTTTCTGCACCCCCCTTCCCTTCAACGCCGTCGCCTCCACTCCGC
CGCCTCCCCTTCGGGCAGGTCGTGGCGCAAGGCATCCCGTGCACGTTTCC
CCTCGATGCTGCCGTAGAAAGCTTTGACCTGGTTCTCATGGCGGAGAACG
ACAGCGACGCCGGAGCGACGAAATCGGCCGCCGTTGACCAGGCATCAGCA
TCAAAAGAGGACTCGTCTCAATTAGCGGAGACAGCGGCGGTGGCGGTAGC
GGGGGATGGCCACGAAACCGACGAAGTGGTAATCAGCGCGGAGGACGCGG
CCGAAGCCGTCGAGGCGGAAGCGGAAGCGGCAGCAACGGCGGCTGTACCA
GACGCCGCTGAACCCGGAGAAGCCGGTGTAGACGAGGTGGCCACCGCCGC
CGCCGCCGCAGCTGGCGGTGTTCCTGGGCAGGGGAACGATGCCGAAGAGG
AGCTCCACGATGCCTCGGGGGCGGCCGCTCCCGTTGCAGACGCTGCTGAG
GCACCAGTCGTGGGGGAAACGGAGGCGGTGGGAGCGGAGGCCGGCCAGGG
AGAAACCGCGGAGTCCGAAGCAGCGGGTGAGGTGGACGAGGCGAAGGAAG
CAACGGATGAGGCCTCGCCGGTGGTGACGGGGACGACCGACGAAGAGAGT
AACGCTAACGTCGCTGACGCCGCCACCACCCCAGCGAGTGCAGCAGCAGC
AGCAGCAGCAGCAGCAGGGGAGGAGGTGGCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11356:1811..3841-

>mRNA_Ecto-sp8_S_contig11356.1722.1 ID=mRNA_Ecto-sp8_S_contig11356.1722.1|Name=mRNA_Ecto-sp8_S_contig11356.1722.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11356:1811..3841- (Ectocarpus species8 EcLAC_412)
ATGTCCCAGTCCCGCGTGAACCTGGCGACAGCCAAGCGGGAGCTGGCGGA
GCGCCGAGACGAGGCGAACCTGTGTATGGTGGAGCTGAAGCACGCGCAGG
AGGTGCTGGCCGCTGGGGGCACAGGGCCCAAGGTTCTGTCGGTTACGGTG
CAAGAGGTATTCGGCCCGATCACGGTGGACAGGGTAGCAGTTCGTCCAGA
CGCTTCACCAGCGCAGGAAAAGGTCGTGGCGCAAGGCATCCCGTGCACGT
TTCCCCTCGATGCTGCCGTAGAAAGCTTTGACCTGGTTCTCATGGCGGAG
AACGACAGCGACGCCGGAGCGACGAAATCGGCCGCCGTTGACCAGGCATC
AGCATCAAAAGAGGACTCGTCTCAATTAGCGGAGACAGCGGCGGTGGCGG
TAGCGGGGGATGGCCACGAAACCGACGAAGTGGTAATCAGCGCGGAGGAC
GCGGCCGAAGCCGTCGAGGCGGAAGCGGAAGCGGCAGCAACGGCGGCTGT
ACCAGACGCCGCTGAACCCGGAGAAGCCGGTGTAGACGAGGTGGCCACCG
CCGCCGCCGCCGCAGCTGGCGGTGTTCCTGGGCAGGGGAACGATGCCGAA
GAGGAGCTCCACGATGCCTCGGGGGCGGCCGCTCCCGTTGCAGACGCTGC
TGAGGCACCAGTCGTGGGGGAAACGGAGGCGGTGGGAGCGGAGGCCGGCC
AGGGAGAAACCGCGGAGTCCGAAGCAGCGGGTGAGGTGGACGAGGCGAAG
GAAGCAACGGATGAGGCCTCGCCGGTGGTGACGGGGACGACCGACGAAGA
GAGTAACGCTAACGTCGCTGACGCCGCCACCACCCCAGCGAGTGCAGCAG
CAGCAGCAGCAGCAGCAGCAGGGGAGGAGGTGGCG
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