mRNA_Ecto-sp8_S_contig11345.1712.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11345.1712.1
Unique NamemRNA_Ecto-sp8_S_contig11345.1712.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11345.1712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11345contigEcto-sp8_S_contig11345:3766..6505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size567
Hectar predicted targeting categoryother localisation
Exons5
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143211.3962617-CDS-Ecto-sp8_S_contig11345:3765..38601681143211.3962617-CDS-Ecto-sp8_S_contig11345:3765..3860Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11345 3766..3860 +
1681143211.4037094-CDS-Ecto-sp8_S_contig11345:4487..45361681143211.4037094-CDS-Ecto-sp8_S_contig11345:4487..4536Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11345 4488..4536 +
1681143211.4106934-CDS-Ecto-sp8_S_contig11345:5126..52681681143211.4106934-CDS-Ecto-sp8_S_contig11345:5126..5268Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11345 5127..5268 +
1681143211.4180117-CDS-Ecto-sp8_S_contig11345:5776..59521681143211.4180117-CDS-Ecto-sp8_S_contig11345:5776..5952Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11345 5777..5952 +
1681143211.4256034-CDS-Ecto-sp8_S_contig11345:6400..65051681143211.4256034-CDS-Ecto-sp8_S_contig11345:6400..6505Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11345 6401..6505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11345.1712.1prot_Ecto-sp8_S_contig11345.1712.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11345 3766..6505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11345.1712.1

>prot_Ecto-sp8_S_contig11345.1712.1 ID=prot_Ecto-sp8_S_contig11345.1712.1|Name=mRNA_Ecto-sp8_S_contig11345.1712.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=189bp
MSHGGDETTWEYVRPSSSFQNAGHYAPPSTPRVHAFPALPRTEPADRKGQ
PPVGGVGMDVCKGRHNPYRGGFASFDLRFTYLREGGHQVSRSPGPGNYDT
RHLTGGALVKRPKTPSPCFRRPGGRLDFGVGGTWHKETPLESAEGYGTVR
GNLKKQAQHYSLSFRSKADRLIVNKPAKTTHEGIGPGCY
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mRNA from alignment at Ecto-sp8_S_contig11345:3766..6505+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11345.1712.1 ID=mRNA_Ecto-sp8_S_contig11345.1712.1|Name=mRNA_Ecto-sp8_S_contig11345.1712.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2740bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11345:3766..6505+ (Ectocarpus species8 EcLAC_412)
ATGAGCCACGGGGGCGACGAGACCACCTGGGAGTATGTTCGGCCGTCATC
TAGTTTCCAGAACGCAGGGCATTATGCGCCCCCATCAACCCCAAGGTGAC
TTGCATCGCTGGGTGATAGCCGAGGGGAAGCGGTATTCGAAACCTGGGCG
TCTCGTTTAGAGGTACAGCAGAGAGAAAACCATTCACCACCAGCAGAGCA
TGCTACTGGTACGTATGGCTTTAAACAATATGTGTTATTGTAGCAAGGTA
GTTTTCATCGTGGCTTGAGCTGTTCCCTCACAACCTTGCGACGTTTAGAT
GCATATTCAGTCAGGAGATTGTAGAGATCGATGCTTTGAGAGAACATTCA
GAGAGTACCCGTTGAGTACAGTACAGTACAGTAGTACAGGGTGTTCGCGT
TCAAGCCGGCCGGAAGACTGACGTCTTTACACTGGTCTGCCATTTAGCGC
AGTCGATCCATATTTAAACAGTATACATACACGCCTCCACACCTCCAACA
TACCGCGCACCTGGCTGTCCGCGGACGCAGTTGGTATGCACTGCGTGTGT
CCTACCGTGGAAGTACTACATGAAATTGGAATGAGCTGAGCGTTCCCCAC
TACCGCAGGGTGCTGGTTCGTGATATCTACATAGACTACAGATCGTTTTC
GTGTGCATTATCATTTCCCTGTTCTTCCATGTATTGTTGGGCCCTGCCAC
GGTGAATGGGCTTCGTGGGCAGGGTGCATGCCTTCCCAGCTTTGCCGCGG
ACGGAGCCGGCGGATCGGAAGGTACCACGATTTCTGGACACAGCCAGTGC
TCGTTGCCCTGAGTTCGTGTCCGCAACACAACACAACAAGTAGTCTACTG
TTTACGGGAGATTCTTGTCCGTGACATGCAAATGAACCACGACAACCGAT
GGACTCATTAGTTGGTACCCATCGATTCACAATTAGTTCTTGCGGAACCC
TGCGGCCCTCACCATCGGTTGCCAAGCGAAAGGCCAGAATTCCACTGTGA
TTGAGCCTGTGTCGTTGCATTATCTCACTTCATAGGCAGCCAATATTCTT
CCGTTATGTCGCTGTTATCATGCCTCACCGGCCAGGACACCCTAAACATG
CATCACTTTCTTGCTGCTACCTAGAAGCGTGCGGTGGTGACAGCGTTTGT
ACCACGAGTGAGTTCCCCCAGTGCGGAAAAATTCGTTTCTGAAACGAGTG
AAGCTCGTAAACCATACGAACAGTATAACCCTGTCCGAGGAGTCAGTTGA
TTGTCAACAACAATAGCAGTAGTAGCGCCACACGTATCAATACCAGCAGC
CGTACCACCAACAACCTGGACCCATCAACACAACCATCGTGCTTTACCAC
TACCGATGCAGGGGCAGCCACCTGTCGGGGGTGTTGGCATGGACGTGTGC
AAGGGTCGCCACAATCCTTATCGCGGAGGGTTCGCGTCGTTCGACCTCCG
CTTCACATACCTCAGGGAGGGTGGGCATCAGGTGTCTCGATCGCCGGGAC
CTGGTAAGAACAGCCAGAGGCATTGTAGATCATTCTAAGCGCAACCGCCT
GCCGCGGATACTCCATACAATCGTTCCAAAGTTGGACCGCACTATTAATG
GTACGCGTACCACGATGCATAGATTGCCAGGACCTCCAGAACGATTCGCA
ACACTCAGGACGATATCATTCTATATATTTGTCACGGATAAGTCATAAGC
TTTACCATACCTACACTAGGAAGAGGATTTCACCAGGTTCATCCAACTAC
CTCGACATGATTTCGCCGACCTGGTTCCCGAGTACATATAGGTGGTTTCT
CAACAATTTTTCAGAGCTGTTCACTCCTCCCATGTACTTCCACTGTCGAC
AAACGTTGGTCTCAAGTCGGCCTGCTGCCGCCCTAGACCAGTTGATCGAG
AGTTATTCGAGGAGAGCGTCGGAGTGACGGACCTTATGACTGTGTCTTCA
GGCATAAACTGGCTTGCGAGATCACTACCTTTTCATGAACCTGTTGGCCC
AACTGCTGCAGGCAACTACGACACTCGGCACCTTACCGGCGGTGCCCTGG
TTAAGCGTCCGAAGACCCCGTCCCCGTGCTTCCGTCGCCCTGGTGGCCGG
CTGGACTTCGGCGTCGGTGGGACATGGCACAAGGAAACGCCGCTCGAGAG
CGCTGAGGGGTACGGCACTGTTCGGGGCAACTTGAAGGTAATGACTTCGG
GCCGCAGCTCTCTACAGAATGTACTCTTGAGATCAACCGTACTTCTTCTC
TTCTCGAAGAAAGCTGTTTTATAGCAAGCCCAGCGAGTGACTACAGCAAT
GTACGTGGCTGTTTGGAGCGACACGACCTCATACGTGTCAGCACTGTGCC
GCAACGCTAGCTGTTGCGGCACGAGCAACTCGTTCACTTCGCCTCGGGGC
GGTACAGATGCATTCAACGGGCGCTTACGATATTGGCAGCCAAGCAACTG
CTTCAGGCTTGTTGAGCCTTGGTGTGAAAACGTAACCACGTCGCCTTTTC
GGTTTGGAACGGTCCATCTCGGAAAGCCCCAGCAAGATTGGAGGCAGACA
CATATTCACAGCGCCTCCCTGCTCGCTGTGAAATCTTTCCCGACTCACCA
CTCCTTCAAATTCAACCCAAACTCCAAACCACCAGAAGCAGGCTCAGCAC
TACAGCCTAAGCTTTCGGTCGAAGGCGGACAGGCTAATAGTTAACAAACC
GGCCAAGACCACCCACGAAGGGATCGGTCCCGGCTGCTAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11345:3766..6505+

>mRNA_Ecto-sp8_S_contig11345.1712.1 ID=mRNA_Ecto-sp8_S_contig11345.1712.1|Name=mRNA_Ecto-sp8_S_contig11345.1712.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11345:3766..6505+ (Ectocarpus species8 EcLAC_412)
ATGAGCCACGGGGGCGACGAGACCACCTGGGAGTATGTTCGGCCGTCATC
TAGTTTCCAGAACGCAGGGCATTATGCGCCCCCATCAACCCCAAGGGTGC
ATGCCTTCCCAGCTTTGCCGCGGACGGAGCCGGCGGATCGGAAGGGGCAG
CCACCTGTCGGGGGTGTTGGCATGGACGTGTGCAAGGGTCGCCACAATCC
TTATCGCGGAGGGTTCGCGTCGTTCGACCTCCGCTTCACATACCTCAGGG
AGGGTGGGCATCAGGTGTCTCGATCGCCGGGACCTGGCAACTACGACACT
CGGCACCTTACCGGCGGTGCCCTGGTTAAGCGTCCGAAGACCCCGTCCCC
GTGCTTCCGTCGCCCTGGTGGCCGGCTGGACTTCGGCGTCGGTGGGACAT
GGCACAAGGAAACGCCGCTCGAGAGCGCTGAGGGGTACGGCACTGTTCGG
GGCAACTTGAAGAAGCAGGCTCAGCACTACAGCCTAAGCTTTCGGTCGAA
GGCGGACAGGCTAATAGTTAACAAACCGGCCAAGACCACCCACGAAGGGA
TCGGTCCCGGCTGCTAC
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