mRNA_Ecto-sp8_S_contig11288.1652.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11288.1652.1
Unique NamemRNA_Ecto-sp8_S_contig11288.1652.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11288.1652.1 vs. uniprot
Match: A0A6H5KY10_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY10_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.750e-33
Identity = 69/92 (75.00%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:   34 MWAQGALRRGSRPELLGWKYPGDGFLSSRRALPVTALVKLRNARRPSTTCAKETAXXXXXXXXXXXXXGVKTLLPHHLSPRWNERHDISIFG 309
            MWAQGA  RG R ELLGWKYPG GFLSSRRALPV A VKLRNARRP+TT AKETA  XXXX       G+K  LPHHLSPRWNERHDI +FG
Sbjct:    1 MWAQGASCRGCRHELLGWKYPGAGFLSSRRALPVAAPVKLRNARRPNTTAAKETASAXXXXAGKGE--GIKAFLPHHLSPRWNERHDICVFG 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11288.1652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY10_9PHAE1.750e-3375.00Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11288contigEcto-sp8_S_contig11288:3996..5091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size311
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143207.3539934-CDS-Ecto-sp8_S_contig11288:3997..41421681143207.3539934-CDS-Ecto-sp8_S_contig11288:3997..4142Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11288 3998..4142 -
1681143207.3645701-CDS-Ecto-sp8_S_contig11288:4927..50911681143207.3645701-CDS-Ecto-sp8_S_contig11288:4927..5091Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11288 4928..5091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11288.1652.1prot_Ecto-sp8_S_contig11288.1652.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11288 3998..5091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11288.1652.1

>prot_Ecto-sp8_S_contig11288.1652.1 ID=prot_Ecto-sp8_S_contig11288.1652.1|Name=mRNA_Ecto-sp8_S_contig11288.1652.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=103bp
AAHAQTQRTSFMWAQGALRRGSRPELLGWKYPGDGFLSSRRALPVTALVK
LRNARRPSTTCAKETASAAAAAAAAGKGGGVKTLLPHHLSPRWNERHDIS
IFG
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mRNA from alignment at Ecto-sp8_S_contig11288:3996..5091-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11288.1652.1 ID=mRNA_Ecto-sp8_S_contig11288.1652.1|Name=mRNA_Ecto-sp8_S_contig11288.1652.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1096bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11288:3996..5091- (Ectocarpus species8 EcLAC_412)
GCTGCACACGCCCAGACACAGAGGACCAGTTTCATGTGGGCTCAGGGAGC
TTTACGTCGAGGAAGCCGGCCTGAATTGCTGGGGTGGAAATATCCTGGCG
ATGGGTTCCTCTCATCACGCAGGGCGCTTCCGGTTACCGCACTCGTAAAA
CTCCGCAATGCCCGGTAGGATAACACACCGGATCGACATATCGGCCGCAT
GTTTCTGTTGTGTATGCAATGACATGATGGTGAAATTTGATGAGCGGTGT
ACCCCAGAACTCAAAGGTCTGCAGTAGCCGTACGCTCTATCAACGAGTTC
GGCAGACTACTGTGCTGTAGTTCATCCGGCATGGAACCTTCACGTTTCCG
TGCGTAGGCCGGCACCCAGTGCGCAGCCGATCCATACAGCACAAGTACAG
CCACCTGCTGCACCTCTCGCCGGCATGTACAGCAGTAGATACTATTCCCG
TAGATACCACACCCGCTTGGACCGAAATTTAAATCTCTAGTGCTCCACAA
CGAAGAGGATGCAAATCAACTGATGCAATGTTGGCCAGCTCTCAACTACG
ATGGTTCCAACGCCGCCGTTTTTGGCACCGTCGCTATGTTGATGCAGAGA
GAGTAAATAATCTCGCTTTGAAAATCAGTCCGGGGGGTGTGATATCTTCT
GTAACCTACCGTACGGTAGTCGACATAGCCACAGCAGTAGCGTAGCTCTA
CGATGGTCTACCCACACAACAAATGTAGAAGCACAGCAGCAGTCATTTAC
CATGGCCTGCTACATACAATCCATCCGTTTGCTTTGCGAATCGCCAACGT
TGCTTTGGTGTGCCTTGTGTTAGTTTCTCTATCGCCTTCTTTGTTGTCAG
ATTGGAGCAGACACACCCGACCCAGTCACCACGCCCACGGACGGATGAAC
CTATGAACCTTCTTGTTTTCCGTCGTGGCCTCTCCTTGCCTACACACAGC
CGACCCAGCACCACCTGCGCCAAGGAGACCGCGTCGGCCGCCGCCGCCGC
CGCCGCCGCCGGAAAGGGTGGGGGTGTTAAGACGTTATTGCCGCACCACC
TCTCCCCTCGCTGGAACGAGCGCCACGACATCTCCATCTTCGGCAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11288:3996..5091-

>mRNA_Ecto-sp8_S_contig11288.1652.1 ID=mRNA_Ecto-sp8_S_contig11288.1652.1|Name=mRNA_Ecto-sp8_S_contig11288.1652.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11288:3996..5091- (Ectocarpus species8 EcLAC_412)
GCTGCACACGCCCAGACACAGAGGACCAGTTTCATGTGGGCTCAGGGAGC
TTTACGTCGAGGAAGCCGGCCTGAATTGCTGGGGTGGAAATATCCTGGCG
ATGGGTTCCTCTCATCACGCAGGGCGCTTCCGGTTACCGCACTCGTAAAA
CTCCGCAATGCCCGCCGACCCAGCACCACCTGCGCCAAGGAGACCGCGTC
GGCCGCCGCCGCCGCCGCCGCCGCCGGAAAGGGTGGGGGTGTTAAGACGT
TATTGCCGCACCACCTCTCCCCTCGCTGGAACGAGCGCCACGACATCTCC
ATCTTCGGC
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