mRNA_Ecto-sp8_S_contig11281.1646.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11281.1646.1
Unique NamemRNA_Ecto-sp8_S_contig11281.1646.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11281.1646.1 vs. uniprot
Match: D7FR27_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR27_ECTSI)

HSP 1 Score: 575 bits (1481), Expect = 3.070e-193
Identity = 421/529 (79.58%), Postives = 426/529 (80.53%), Query Frame = 1 
Query:  124 TTGKSETGQPRQAMVAGQHHKTTASTLAARDRAAADAHAAPRRRLHQGEELDSIEGFTEQRQAPKLMPPTRELLASXXXXXXXXXXXXXNTGFYGDGGSGPKKAAGPGSSTGLEAATSGGVVESIADVVSKVMGDTAAMADGLVTPPPVAPSTWDWDKNSGGPAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMTSLALSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVTVEDASRMLAPLVAQEVEKETKKIEIRMQ---------------------------NEMNSALRTMRSEMEAIDREGLMARVAMEKRLKTGIKRLLERIDHLERRFSKLEREDRKRLALEAASVAAAPTPXXXXPLALGGAADVVVRLQSPSSASETSAALTKSNRAPDTPEARPLVTWSGGDGDFSSAAGSTAASLCDGEYSEAGDDTEADIVRMLEEKMAALEGKLLGHEERQRADPRAAEGLGMTPAMW 1629
            T GK ETGQPRQ +VAGQHHKTT +TLAARDRAA DAHAAP RRLHQGEELDSIEGFTEQRQAPKLMPPTRELLASXXXXXXXXXXXXXNTGFYGD     KKAAGPG S GLEA+ SGGVVESIADVVSKVMGDTAA+ADGLVTPPPVAPSTWDWD NSGGPAGS     XXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXX                 GMTSLALSDG                  XXXXXXXXXXLVTVEDASRMLAPLVAQEVEKETKKIEIRMQ                           NEMNSALRTMRSEMEAIDREGLMARVAMEKRLKTGIKRLLERIDHLERRFSKLEREDRKRLALEAASVAA    XXXX    GGAADVVVRLQSPSSASETSAAL KSNRAPDTPEARPLVTWSGGDGDFSSAAGSTAAS CDGEYSEAGDDTEADIVRMLEEKMAALEGKLLGHEERQR DPRAAEGLGM+PAMW
Sbjct:  427 TAGKPETGQPRQPVVAGQHHKTTTATLAARDRAAVDAHAAPHRRLHQGEELDSIEGFTEQRQAPKLMPPTRELLASXXXXXXXXXXXXXNTGFYGDXXXXXKKAAGPGPSAGLEASASGGVVESIADVVSKVMGDTAAVADGLVTPPPVAPSTWDWDTNSGGPAGSAATGKXXXXXXXXXXXXXXXXXXXMVPSSVGPVSXXXXXXXXXXXXXXXXXXXXASFSTAPESSSEPEVAAGMTSLALSDGSRSGLNSSSQGTTAIEVSXXXXXXXXXXLVTVEDASRMLAPLVAQEVEKETKKIEIRMQRRVPSSVVCAAAKRVRLALLKHLGAWQNEMNSALRTMRSEMEAIDREGLMARVAMEKRLKTGIKRLLERIDHLERRFSKLEREDRKRLALEAASVAAXXXXXXXX---XGGAADVVVRLQSPSSASETSAALNKSNRAPDTPEARPLVTWSGGDGDFSSAAGSTAASSCDGEYSEAGDDTEADIVRMLEEKMAALEGKLLGHEERQRTDPRAAEGLGMSPAMW 952
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11281.1646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FR27_ECTSI3.070e-19379.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11281contigEcto-sp8_S_contig11281:2..3935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score587.8
Seed ortholog evalue5.2e-165
Seed eggNOG ortholog2880.D7FR27
Model size1635
KEGG koko:K17576
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Cds size1635
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143206.8822567-CDS-Ecto-sp8_S_contig11281:1..8151681143206.8822567-CDS-Ecto-sp8_S_contig11281:1..815Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11281 2..815 +
1681143206.8974864-CDS-Ecto-sp8_S_contig11281:1259..13621681143206.8974864-CDS-Ecto-sp8_S_contig11281:1259..1362Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11281 1260..1362 +
1681143206.9056654-CDS-Ecto-sp8_S_contig11281:2122..22461681143206.9056654-CDS-Ecto-sp8_S_contig11281:2122..2246Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11281 2123..2246 +
1681143206.913915-CDS-Ecto-sp8_S_contig11281:3341..39351681143206.913915-CDS-Ecto-sp8_S_contig11281:3341..3935Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11281 3342..3935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11281.1646.1prot_Ecto-sp8_S_contig11281.1646.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11281 2..3935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11281.1646.1

>prot_Ecto-sp8_S_contig11281.1646.1 ID=prot_Ecto-sp8_S_contig11281.1646.1|Name=mRNA_Ecto-sp8_S_contig11281.1646.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=545bp
GAGGPRPSPPSGGGVGTSASSSGPGGLQRTSSKASMRGGGGTTGKSETGQ
PRQAMVAGQHHKTTASTLAARDRAAADAHAAPRRRLHQGEELDSIEGFTE
QRQAPKLMPPTRELLASQAAAATLAAGGGGNTGFYGDGGSGPKKAAGPGS
STGLEAATSGGVVESIADVVSKVMGDTAAMADGLVTPPPVAPSTWDWDKN
SGGPAGSAAAGKKEENDADDSPSTTASGASTMVPSSVGPVSTAQQGGGGA
KAVALSRKSSAASFSTAPESSSEPEVAAGMTSLALSDGRRSGSNSSSQGT
TAIEVSSGGGGGSQQQLVTVEDASRMLAPLVAQEVEKETKKIEIRMQNEM
NSALRTMRSEMEAIDREGLMARVAMEKRLKTGIKRLLERIDHLERRFSKL
EREDRKRLALEAASVAAAPTPPTPPPLALGGAADVVVRLQSPSSASETSA
ALTKSNRAPDTPEARPLVTWSGGDGDFSSAAGSTAASLCDGEYSEAGDDT
EADIVRMLEEKMAALEGKLLGHEERQRADPRAAEGLGMTPAMWT*
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mRNA from alignment at Ecto-sp8_S_contig11281:2..3935+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11281.1646.1 ID=mRNA_Ecto-sp8_S_contig11281.1646.1|Name=mRNA_Ecto-sp8_S_contig11281.1646.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3934bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11281:2..3935+ (Ectocarpus species8 EcLAC_412)
GGAGCGGGGGGTCCGCGACCTTCTCCGCCGTCTGGAGGAGGGGTTGGAAC
AAGCGCGTCGTCCTCGGGACCCGGTGGCCTTCAACGGACGTCGAGCAAGG
CGTCCATGCGAGGAGGCGGGGGAACCACGGGGAAATCTGAAACGGGACAA
CCGAGACAGGCGATGGTGGCGGGTCAGCATCACAAGACGACGGCGTCGAC
GCTTGCCGCTCGCGACCGCGCCGCCGCCGATGCCCACGCCGCCCCCCGCA
GGCGCTTGCACCAGGGGGAGGAGCTGGACTCGATCGAAGGGTTCACGGAG
CAACGGCAAGCTCCGAAGTTGATGCCGCCAACCCGGGAGTTGCTGGCGAG
CCAGGCAGCCGCCGCGACGTTAGCAGCCGGTGGTGGTGGCAACACCGGAT
TTTATGGTGACGGCGGCAGCGGGCCGAAGAAGGCGGCGGGGCCAGGGTCC
TCGACAGGCTTGGAGGCCGCCACCAGTGGGGGTGTCGTAGAATCGATCGC
GGATGTGGTTTCCAAGGTGATGGGGGACACTGCGGCCATGGCGGACGGTC
TGGTAACGCCTCCTCCCGTCGCGCCTTCGACGTGGGATTGGGACAAGAAT
AGTGGTGGCCCTGCTGGATCTGCGGCGGCGGGGAAGAAAGAGGAGAACGA
TGCCGACGACTCCCCTTCTACCACCGCCAGCGGTGCTTCTACGATGGTCC
CGTCTTCGGTTGGGCCGGTGTCGACGGCACAGCAAGGGGGCGGCGGGGCC
AAGGCGGTGGCGCTGTCGCGGAAATCGTCGGCCGCGAGCTTCTCTACCGC
ACCCGAGTCGAGCTGTGAGTGCCGTGCGTCGCAGACGGTGTGTGGCGTGA
GAATATGGGGGAATAAATTCCGGGGTTGTGCCGAGCATAAACTAAGCAGC
AGCTGCGAAAATGTTCGACCAGCCGCTCCCAGTTCGTGCATCTCCCGAGA
TACCGTTGTGTGCTTGCGGCCCGTGATTCGGAAGGCTCTCGAAGTTGATG
TACTTTTCTCCAGATAATTCTTCTACATACCCTCTCTGTTCCAGCGCCAA
CATGCCGCCGAATTTGACATGTTTGATTGAAAAGTCGCGGCGTGACTTGA
TTTCTTCCCTGTGTTTCGATGGGAGTGTGGAAGAATGGCATTGGTTTTCT
ATCACGATACCATATGAAGCATCGGCTCGTGTGAATGAATAGGCTTGGCT
GACTGGCCGCGTTTCCGCTCTTCTCGATGTCAACCTTACGAATCCGTGCG
AACCTCAGCGGAGCCAGAGGTGGCGGCGGGGATGACGTCTCTAGCGCTGA
GCGACGGCCGCAGATCAGGCTCGAACTCGAGCTCTCAGGGTACTACGGCT
ATTGAAGTCAGGTATGTCTTGTGCGTTTGTGCTGTTTGCCGGTTGACTGC
TGTGGCAGCGGCATATCTGCGCTGCCCAGGCCGTGGTGTCTCGTTTGTTG
GAAGCCTATCCCGTCGACGTATGTGCATGCTTATTTGTGGCGAAACCGTT
TCTCCGTGTTTCAGCTGAAATCGAGTTGTAGGAATTGTCTCTTTCCAGCG
AGCGGCAAACGTTGGCGCTTGTGGTTGTCTTGACGATGCGGCTACAGAAA
AAAACAGCACGTGTACTATGTGAGAGTCGTGCATGGTCGCGCAAACGCTC
TCGTGTGCTTGGGAAACCCCACCCAACGGCTTCGTATTGTATTCTTCGTA
GTATATATAGGTACTGGTAACCCCCATGCAGCATTTTCTAGCCGCGGGCA
GGTAGGTGCCTTGTCGCGTGGCTCTCTCGCACGTAAGGGGCCCCTTTTCT
TTCTTGGGGCATCCAGATGAGAGCTTGAACTGACGTCTGCTACCGAATCC
AGCGGCTTGGGGTTAGAGAGAGAGAGAAGAGGGAGGGAGAGAGAGAGAGA
GAGAAAGAGGGAGGGAGGGGGGGGCGATACAGAAAGACAGACAGAGGCAG
AGCGAGAGACAAAAGATAGAGGCGAGCGCAGAGAGAGACAAAGACAGAGG
CAAGCAGAGAGACAGACAGACTGAGAGGGAGAAAGAGACTGTTTTGAGCC
CCGAGACCTAACCTTCGTCGGCTGCCGTTGATGCGCATTGTTTTTCCCGG
TCACACTTGGAAACGAAGCAGCTCTGGCGGGGGCGGCGGTAGCCAGCAGC
AGCTGGTTACCGTGGAAGACGCGAGTCGGATGCTCGCTCCCCTTGTCGCC
CAAGAGGTGGAAAAGGAGACCAAAAAGATTGAGATCAGGATGCAGGTGCG
TGTGCGTGTGTTTGTTTCACCGCATCGACCGGGCTCTCACCGGCTGACCA
ATGAAACGACGCCAGTCTCAGTGAGGGTGAAAACGGAAAATGCGGTGGTT
GGTTGCTGTTTCTTGTCGGCTGTAAGCCCTTGCAGAGAGACGCGTGCGTT
CTTACCGTCGTGTGCGCAGCTGCGTACCACGTACGGTTAGCGCTATTAAA
GCACGTAGGAGCTTGGCAGTTAAGAAATTGATGTGATATAGCCTCGAAAA
ACCCATAATCTAAGAATTTGAGCACTATTTGTGAGCCCGGTTCAGAAGCT
CTACACTCAATCCTATGTGGCGGCCCATTTGTAGCATGACCCTAGCAGTA
CAGTAAGAACCCCAGCCTCAGCCAACAAAAGAGGTTTTCAACTGCGGGCG
CTTGCTGTAGTTTGTTTTGCATAAGGTTAGGTAGAAGCTCACACGGTAGC
CCCGGCATCGCGAATTCGTTGCCGTTCCCTTACCGTCGTCCCCCCACTTC
CCTCATGAGTCTCCTCCCTAAAAAGATTCCTTGCAACAGGAAAGTGTCCT
TGAGATAATACCACCTCTGCGTTGTTGCGTTTGCATTCTGCGGGGCGCCA
TGCCTCTGAACTCAATACAGTAGCTTCCTCTTGAAAGCGGGGACTGCAGT
GCTGCTTTGATGGTTTCTGTGAGGCAGAATGATGTCTTTTTCGGTCGCAA
GGCGAACGCGTTTTGAGCGGGATGAATGATTGGAAGTGTCGAAGGAACTG
TTTTTGAGAGCAGCGGTTGTTGTCTGGCGTTGACCTGCCACCATGAAACG
CCAATGCACCTGCAGCAGTGGTTCAGGACACACATGATTTTTTCGTAAAA
GCTGGTGGGTGCCCTTAAGCCAGGGAAGTCTCCTTAGGTAAGACATCCCT
CCTTATTTTGTGCATTCGGCGGGGCACCATGCCTGTGAGAGAAAAGTTGT
CCTTAAACCGGGGGAGCGTTATGTCCTTCACAAAGGGACAACTGTAATGT
ACTCCTAAAACGAAAGTGCAAGCAGTGCTTAGGACCCCAATAGCAAACAC
GCGCACCCACCCGCCCACCCACCCACGCTTTCTTCTCCAGAACGAGATGA
ACTCAGCGTTGCGGACGATGAGGTCGGAGATGGAGGCTATCGACCGCGAG
GGGCTGATGGCGCGGGTGGCCATGGAGAAGCGCCTCAAGACGGGCATCAA
GCGGCTGCTGGAGCGCATCGACCACCTGGAGCGGCGGTTCTCCAAGCTAG
AGCGAGAGGACCGGAAGCGACTGGCCCTGGAAGCGGCTTCTGTCGCAGCA
GCGCCGACGCCGCCGACGCCGCCGCCGCTGGCCTTGGGGGGTGCCGCCGA
CGTTGTTGTGCGTCTGCAGTCCCCCTCCTCGGCAAGCGAAACCTCGGCTG
CCTTGACCAAGAGCAATCGCGCGCCGGATACACCGGAGGCTCGGCCGCTC
GTGACGTGGTCGGGCGGCGACGGGGATTTCAGCAGCGCGGCCGGGTCTAC
CGCCGCCTCTTTGTGCGACGGAGAGTACTCCGAGGCAGGAGATGACACCG
AGGCGGACATCGTCCGGATGCTGGAGGAGAAGATGGCGGCGCTGGAGGGA
AAGCTCCTGGGCCACGAGGAGCGGCAGCGCGCCGACCCGAGGGCCGCGGA
AGGGCTGGGGATGACCCCCGCGATGTGGACTTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11281:2..3935+

>mRNA_Ecto-sp8_S_contig11281.1646.1 ID=mRNA_Ecto-sp8_S_contig11281.1646.1|Name=mRNA_Ecto-sp8_S_contig11281.1646.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1635bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11281:2..3935+ (Ectocarpus species8 EcLAC_412)
GGAGCGGGGGGTCCGCGACCTTCTCCGCCGTCTGGAGGAGGGGTTGGAAC
AAGCGCGTCGTCCTCGGGACCCGGTGGCCTTCAACGGACGTCGAGCAAGG
CGTCCATGCGAGGAGGCGGGGGAACCACGGGGAAATCTGAAACGGGACAA
CCGAGACAGGCGATGGTGGCGGGTCAGCATCACAAGACGACGGCGTCGAC
GCTTGCCGCTCGCGACCGCGCCGCCGCCGATGCCCACGCCGCCCCCCGCA
GGCGCTTGCACCAGGGGGAGGAGCTGGACTCGATCGAAGGGTTCACGGAG
CAACGGCAAGCTCCGAAGTTGATGCCGCCAACCCGGGAGTTGCTGGCGAG
CCAGGCAGCCGCCGCGACGTTAGCAGCCGGTGGTGGTGGCAACACCGGAT
TTTATGGTGACGGCGGCAGCGGGCCGAAGAAGGCGGCGGGGCCAGGGTCC
TCGACAGGCTTGGAGGCCGCCACCAGTGGGGGTGTCGTAGAATCGATCGC
GGATGTGGTTTCCAAGGTGATGGGGGACACTGCGGCCATGGCGGACGGTC
TGGTAACGCCTCCTCCCGTCGCGCCTTCGACGTGGGATTGGGACAAGAAT
AGTGGTGGCCCTGCTGGATCTGCGGCGGCGGGGAAGAAAGAGGAGAACGA
TGCCGACGACTCCCCTTCTACCACCGCCAGCGGTGCTTCTACGATGGTCC
CGTCTTCGGTTGGGCCGGTGTCGACGGCACAGCAAGGGGGCGGCGGGGCC
AAGGCGGTGGCGCTGTCGCGGAAATCGTCGGCCGCGAGCTTCTCTACCGC
ACCCGAGTCGAGCTCGGAGCCAGAGGTGGCGGCGGGGATGACGTCTCTAG
CGCTGAGCGACGGCCGCAGATCAGGCTCGAACTCGAGCTCTCAGGGTACT
ACGGCTATTGAAGTCAGCTCTGGCGGGGGCGGCGGTAGCCAGCAGCAGCT
GGTTACCGTGGAAGACGCGAGTCGGATGCTCGCTCCCCTTGTCGCCCAAG
AGGTGGAAAAGGAGACCAAAAAGATTGAGATCAGGATGCAGAACGAGATG
AACTCAGCGTTGCGGACGATGAGGTCGGAGATGGAGGCTATCGACCGCGA
GGGGCTGATGGCGCGGGTGGCCATGGAGAAGCGCCTCAAGACGGGCATCA
AGCGGCTGCTGGAGCGCATCGACCACCTGGAGCGGCGGTTCTCCAAGCTA
GAGCGAGAGGACCGGAAGCGACTGGCCCTGGAAGCGGCTTCTGTCGCAGC
AGCGCCGACGCCGCCGACGCCGCCGCCGCTGGCCTTGGGGGGTGCCGCCG
ACGTTGTTGTGCGTCTGCAGTCCCCCTCCTCGGCAAGCGAAACCTCGGCT
GCCTTGACCAAGAGCAATCGCGCGCCGGATACACCGGAGGCTCGGCCGCT
CGTGACGTGGTCGGGCGGCGACGGGGATTTCAGCAGCGCGGCCGGGTCTA
CCGCCGCCTCTTTGTGCGACGGAGAGTACTCCGAGGCAGGAGATGACACC
GAGGCGGACATCGTCCGGATGCTGGAGGAGAAGATGGCGGCGCTGGAGGG
AAAGCTCCTGGGCCACGAGGAGCGGCAGCGCGCCGACCCGAGGGCCGCGG
AAGGGCTGGGGATGACCCCCGCGATGTGGACTTGA
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