mRNA_Ecto-sp8_S_contig11279.1643.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11279.1643.1
Unique NamemRNA_Ecto-sp8_S_contig11279.1643.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11279.1643.1 vs. uniprot
Match: D8LFS0_ECTSI (Defective in cullin neddylation protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFS0_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.070e-25
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 3 
Query:    3 TKDMWAQTLAFFFQVDPDLSNFDESDAWPVVVDEFVEAKMAQKKASKSETERP 161
            TKDMWAQTLAFF QVDPDLSNFDESDAWPVVVDEFVEAKMAQKKASKSETERP
Sbjct:  226 TKDMWAQTLAFFCQVDPDLSNFDESDAWPVVVDEFVEAKMAQKKASKSETERP 278
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BLAST of mRNA_Ecto-sp8_S_contig11279.1643.1 vs. uniprot
Match: A0A1V9ZCC0_9STRA (Defective in cullin neddylation protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCC0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.460e-7
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 3 
Query:    3 TKDMWAQTLAFFFQVDPDLSNFDESDAWPVVVDEFVEAKMAQKK 134
            +KD+W QTL F   V PDLSN+DE+ AWPV++D+FV A M +KK
Sbjct:  217 SKDVWTQTLEFTIHVKPDLSNYDENSAWPVLIDDFV-AHMKEKK 259
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BLAST of mRNA_Ecto-sp8_S_contig11279.1643.1 vs. uniprot
Match: A0A7S0IWR0_9EUKA (Defective in cullin neddylation protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IWR0_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 5.040e-7
Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = 3 
Query:    3 TKDMWAQTLAFFFQVDPDLSNFDESDAWPVVVDEFVEAKMAQK 131
            TKD+W   L F  Q++ + SNFDE  AWPVV+D+FVEA++A++
Sbjct:  208 TKDVWEMLLTFATQINDEFSNFDEDGAWPVVIDDFVEAEIARR 250
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BLAST of mRNA_Ecto-sp8_S_contig11279.1643.1 vs. uniprot
Match: A0A6H5KQQ2_9PHAE (Defective in cullin neddylation protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ2_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 5.420e-7
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 3 
Query:    3 TKDMWAQTLAFFFQVDPDLSNFDES 77
            TKDMWAQTLAFF QVDPDLSNFDES
Sbjct:   50 TKDMWAQTLAFFCQVDPDLSNFDES 74
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BLAST of mRNA_Ecto-sp8_S_contig11279.1643.1 vs. uniprot
Match: A0A067CSX7_SAPPC (Defective in cullin neddylation protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CSX7_SAPPC)

HSP 1 Score: 55.8 bits (133), Expect = 7.620e-7
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 3 
Query:    3 TKDMWAQTLAFFFQVDPDLSNFDESDAWPVVVDEFV 110
            +KD+W QTL F   V PDLSN+DE+ AWPV++D+FV
Sbjct:  223 SKDVWTQTLEFSLHVKPDLSNYDENSAWPVLIDDFV 258
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BLAST of mRNA_Ecto-sp8_S_contig11279.1643.1 vs. uniprot
Match: F0WHZ2_9STRA (Defective in cullin neddylation protein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WHZ2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.000e-6
Identity = 21/36 (58.33%), Postives = 30/36 (83.33%), Query Frame = 3 
Query:    3 TKDMWAQTLAFFFQVDPDLSNFDESDAWPVVVDEFV 110
            +KD+W Q L F  Q+ PD+SN+DE++AWPV++DEFV
Sbjct:  232 SKDLWIQVLEFGSQIRPDMSNYDENEAWPVLLDEFV 267
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11279.1643.1 vs. uniprot
Match: A0A662WF18_9STRA (Defective in cullin neddylation protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WF18_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.190e-6
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 3 
Query:    3 TKDMWAQTLAFFFQVDPDLSNFDESDAWPVVVDEFVEAKMAQ 128
            +KD+W Q L F  Q+ PDLSNFDE+ AWPV++D+F    +A+
Sbjct:  240 SKDLWLQVLEFGHQIQPDLSNFDENGAWPVLLDDFAAHMLAR 281
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11279.1643.1 vs. uniprot
Match: M4BRH2_HYAAE (Defective in cullin neddylation protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRH2_HYAAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.010e-6
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 3 
Query:    3 TKDMWAQTLAFFFQVDPDLSNFDESDAWPVVVDEFV 110
            +KD+W Q L F  Q++PDLSN+DE+ AWPV++DEF 
Sbjct:  210 SKDLWLQVLDFGLQINPDLSNYDENGAWPVLLDEFA 245
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11279.1643.1 vs. uniprot
Match: A0A5D6YBE0_9STRA (Defective in cullin neddylation protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBE0_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.090e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 3 
Query:    3 TKDMWAQTLAFFFQVDPDLSNFDESDAWPVVVDEFV 110
            +KD+W Q L F  Q+ PDLSNFDE+ AWPV++D+FV
Sbjct:  224 SKDVWMQVLEFGTQIKPDLSNFDENGAWPVLLDDFV 259
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11279.1643.1 vs. uniprot
Match: A0A485LPP4_9STRA (Defective in cullin neddylation protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPP4_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.440e-6
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 3 
Query:    3 TKDMWAQTLAFFFQVDPDLSNFDESDAWPVVVDEFVEAKMAQKKA 137
            ++D+W Q L F  QV PDLSN+DE+ AWPV++D+FV A M +K A
Sbjct:  237 SRDVWMQLLEFSTQVKPDLSNYDENGAWPVLIDDFV-AHMLEKGA 280
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11279.1643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFS0_ECTSI2.070e-2598.11Defective in cullin neddylation protein n=1 Tax=Ec... [more]
A0A1V9ZCC0_9STRA1.460e-759.09Defective in cullin neddylation protein n=1 Tax=Th... [more]
A0A7S0IWR0_9EUKA5.040e-753.49Defective in cullin neddylation protein n=1 Tax=Ca... [more]
A0A6H5KQQ2_9PHAE5.420e-796.00Defective in cullin neddylation protein n=1 Tax=Ec... [more]
A0A067CSX7_SAPPC7.620e-761.11Defective in cullin neddylation protein n=2 Tax=Sa... [more]
F0WHZ2_9STRA3.000e-658.33Defective in cullin neddylation protein n=1 Tax=Al... [more]
A0A662WF18_9STRA3.190e-652.38Defective in cullin neddylation protein n=2 Tax=No... [more]
M4BRH2_HYAAE4.010e-658.33Defective in cullin neddylation protein n=1 Tax=Hy... [more]
A0A5D6YBE0_9STRA4.090e-661.11Defective in cullin neddylation protein n=1 Tax=Py... [more]
A0A485LPP4_9STRA5.440e-655.56Defective in cullin neddylation protein n=1 Tax=Ap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11279contigEcto-sp8_S_contig11279:3380..4918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score100.1
Seed ortholog evalue3.1e-19
Seed eggNOG ortholog2880.D8LFS0
Model size341
KEGG koko:K17822
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.cullin family protein binding
EggNOG OGsKOG3077@1,KOG3077@2759
Cds size153
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143206.6567783-UTR-Ecto-sp8_S_contig11279:3379..35561681143206.6567783-UTR-Ecto-sp8_S_contig11279:3379..3556Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11279 3380..3556 -
1681143206.6898322-UTR-Ecto-sp8_S_contig11279:4907..49181681143206.6898322-UTR-Ecto-sp8_S_contig11279:4907..4918Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11279 4908..4918 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143206.670298-CDS-Ecto-sp8_S_contig11279:3556..36421681143206.670298-CDS-Ecto-sp8_S_contig11279:3556..3642Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11279 3557..3642 -
1681143206.682396-CDS-Ecto-sp8_S_contig11279:4840..49071681143206.682396-CDS-Ecto-sp8_S_contig11279:4840..4907Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11279 4841..4907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11279.1643.1prot_Ecto-sp8_S_contig11279.1643.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11279 3557..4907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11279.1643.1

>prot_Ecto-sp8_S_contig11279.1643.1 ID=prot_Ecto-sp8_S_contig11279.1643.1|Name=mRNA_Ecto-sp8_S_contig11279.1643.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=51bp
MWAQTLAFFFQVDPDLSNFDESDAWPVVVDEFVEAKMAQKKASKSETERP
*
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mRNA from alignment at Ecto-sp8_S_contig11279:3380..4918-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11279.1643.1 ID=mRNA_Ecto-sp8_S_contig11279.1643.1|Name=mRNA_Ecto-sp8_S_contig11279.1643.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1539bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11279:3380..4918- (Ectocarpus species8 EcLAC_412)
TAACGAAGGACATGTGGGCTCAAACGCTTGCGTTCTTCTTCCAGGTGGAC
CCGGACCTCTCCAACTTCGACGAGAGTGGTGAGTTGCTCCCCTTGTCTCT
GCTTTGTAAGAATGTAAGCATAACCTCACAGAAATAATACCCGTTCGAGA
CATGTATGACCTCAGTCGAAAGGGATGTGTTGAAGTCTTTTTCAGTAAGT
GGATTGAAACCGACTGGAGTTAAGCAGTATACCTTTTGGCGGCTGGACGC
TGATGGTTCCTAGGATTTTTTTTTCATCTTGTCTATCCTTTTCGAAATAC
ACTAGCAGTCTTTTTGTTTCGCTCCCGCAGCCACTCTGTCTAGAGCGGGA
GGCTCACAGAAGGCTTCCTCTCTCCCCCTAGGCGTCCCACCCTCTATCTG
GGATTCATGCCTTCGCTTATATATTGTAGTCAGAACGGGCCATGTATTGT
CTTCCGATTCTTGGTAATGTAGGTGGGTGCCTTGATTCAGGTGTGATCCG
ATTATCAAATTTGACGAACATGTCGTGTTTAACAACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGTTGATCGGG
CTGTTCGAGCTAGCCCCCCTCGGACTACATTGCTGGAGGAACCTGCGGTG
GTATTATCATAGCTTTCGCCCTCTGGCGAGGGCTGACACAGCCGTTCTCT
CCCTTGTGTGACTTAGCGCAAGGAGAGGCCAGAAGAAGCGAGGCGGGGCG
GTGTCTCGAAGAGAGCTTCGTCGCCTGCGTATTGCCAACAGACACCGCCG
TACGGAAAATAGTCATGTTGCTATAGACGGCGTCTTGACCTCGCGCGCGG
GTTTTCATCGATTCTTTGTTGATATACCTTTGCAGTCTTGTACGACTGAT
CGCCAAGACCAGTCCATACCACGCAGTAGCTTTGTTTTTCACCTACCCAC
CCCGCACCCAAAGTAGGAGGGAACGATTGGCCATCGGTAATCGGTCCTGT
GGGAACAATGCTCCGTCCTCTCTATGATAGGACGCGTGGTCAATGATGTA
ATAACTAAGGCATGCAAAACATGAGTGCAACCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCGCTCCCTCACCACCCCCACCCACCCCTTACACAAAAAAAA
CANNNNNNNNNNCGAAGATAGCCCCGGTTCATAATGAACGAACAACCCAC
GTCTGCAAAACATGATTGCACCCCCCCCCCCCCCCCGCCCGCTCCTATCT
CCCATGCCCCCCCCCCCGTTGTCCAGACGCATGGCCTGTTGTGGTGGATG
AGTTTGTGGAGGCGAAGATGGCGCAGAAGAAGGCGAGCAAATCGGAGACG
GAGCGCCCATAGCACCGGCGGAACCACTCTCACGGAGAAGAGACCTAAAC
GGGCTCGGAGAAGTAATAAGATCGGGGGTGGTGCGGTATGAAGTATTTTT
CCTTCTCCTCCTCCTCCTCTGCTGCTACCGCTGCTGCTGCCACCGCTACG
TGGTAGGACCGTCACACGTCGGTTCTTCGTCCAGCGCGC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11279:3380..4918-

>mRNA_Ecto-sp8_S_contig11279.1643.1 ID=mRNA_Ecto-sp8_S_contig11279.1643.1|Name=mRNA_Ecto-sp8_S_contig11279.1643.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11279:3380..4918- (Ectocarpus species8 EcLAC_412)
ATGTGGGCTCAAACGCTTGCGTTCTTCTTCCAGGTGGACCCGGACCTCTC
CAACTTCGACGAGAGTGACGCATGGCCTGTTGTGGTGGATGAGTTTGTGG
AGGCGAAGATGGCGCAGAAGAAGGCGAGCAAATCGGAGACGGAGCGCCCA
TAG
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