mRNA_Ecto-sp8_S_contig11277.1641.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11277.1641.1
Unique NamemRNA_Ecto-sp8_S_contig11277.1641.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11277.1641.1 vs. uniprot
Match: D7G8A8_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A8_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 3.430e-73
Identity = 155/164 (94.51%), Postives = 157/164 (95.73%), Query Frame = 1 
Query:   37 ELELRNNKGDTALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPGEKFDSVFVPQVVENFFTADEDNERASAAGQEDIMFDDDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAENDDASLAGEEGGDGEPEEEVLGPRENILQMLEEARAEAALETK 528
            ELELRNNKGDTALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPG+ FDSVFVPQVVENFFTADEDNERASAAGQEDIMFDDDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  A  +DASLAGEEGGDGEPEEEVLGPRENILQMLEEARAEA LE K
Sbjct:  199 ELELRNNKGDTALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPGDSFDSVFVPQVVENFFTADEDNERASAAGQEDIMFDDDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPAGKEDASLAGEEGGDGEPEEEVLGPRENILQMLEEARAEATLEAK 362
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11277.1641.1 vs. uniprot
Match: A0A835ZGL3_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGL3_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.200e-10
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   58 KGDTALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPGEKFDSVFV 198
            +GDTAL++AC WGN D  +YLL+ GADPN  N  G+R G++F++VFV
Sbjct:  173 RGDTALNVACHWGNVDTAQYLLDRGADPNCANHDGKRAGDEFETVFV 219
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11277.1641.1 vs. uniprot
Match: A0A812IYA1_SYMMI (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812IYA1_SYMMI)

HSP 1 Score: 57.8 bits (138), Expect = 4.090e-7
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   61 GDTALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPGEKFDSVFVPQVVENFFTA 228
            G TAL +ACF GNED VE+LL A ADP+SRN+ G  P +        +V+E+F  A
Sbjct:  114 GSTALGVACFCGNEDMVEFLLLASADPDSRNNRGHTPVQLARHTHTRRVLEDFVGA 169
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11277.1641.1 vs. uniprot
Match: A0A812V9A4_9DINO (Ank2 protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812V9A4_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 4.150e-7
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   61 GDTALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPGEKFDSVFVPQVVENFFTA 228
            G TAL +ACF GNED VE+LL AGADP+SRN+ G  P          +V+E+F  A
Sbjct:  531 GSTALGVACFCGNEDMVEFLLLAGADPDSRNNRGHTPLHLARHAHTQRVLEDFVGA 586
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11277.1641.1 vs. uniprot
Match: A0A1Q9DRY8_SYMMI (Haloacid dehalogenase-like hydrolase domain-containing protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DRY8_SYMMI)

HSP 1 Score: 56.2 bits (134), Expect = 4.940e-6
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   16 LVTEGDAELELRN-NKGDTALSLACFWGNEDAVEYLLNAGADPNSRNDAGERP 171
            L++ G A++  R    G TAL +ACF GNED VE+LL A ADP+SRN+ G  P
Sbjct:  705 LISRGYAKVTTRKVTSGSTALGVACFCGNEDMVEFLLLASADPDSRNNRGHTP 757
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11277.1641.1 vs. uniprot
Match: A0A844TY91_9BORD (Peptidase A2 domain-containing protein n=2 Tax=unclassified Bordetella TaxID=2630031 RepID=A0A844TY91_9BORD)

HSP 1 Score: 53.9 bits (128), Expect = 2.220e-5
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:   34 AELELRNNKGDTALSLACFWGNEDAV-EYLLNAGADPNSRNDAGERPGEKFDSVFVPQVVENFFTA 228
            A++  R+NKGDTAL  ACF+  +  V ++LL  GADPNS ND G  P     + +  +V+E    A
Sbjct:  203 ADINARDNKGDTALHAACFYRPDPTVIQWLLQHGADPNSPNDGGITPLFSASATYQFEVIEMLLKA 268
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11277.1641.1 vs. uniprot
Match: A0A2T4BK76_9HYPO (Ankyrin (Fragment) n=1 Tax=Trichoderma citrinoviride TaxID=58853 RepID=A0A2T4BK76_9HYPO)

HSP 1 Score: 52.4 bits (124), Expect = 5.290e-5
Identity = 20/48 (41.67%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 DLARVLVTEGDAELELRNNKGDTALSLACFWGNEDAVEYLLNAGADPN 144
            ++AR+LV EG+ ++E ++  G T L   C WG+ D V+ +L+ GADP+
Sbjct:   47 EMARILVEEGNVDIEAKDEDGFTTLYFGCIWGHHDVVKLMLDLGADPH 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11277.1641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G8A8_ECTSI3.430e-7394.51Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A8... [more]
A0A835ZGL3_9STRA3.200e-1057.45Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A812IYA1_SYMMI4.090e-750.00Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]
A0A812V9A4_9DINO4.150e-751.79Ank2 protein n=2 Tax=unclassified Symbiodinium Tax... [more]
A0A1Q9DRY8_SYMMI4.940e-652.83Haloacid dehalogenase-like hydrolase domain-contai... [more]
A0A844TY91_9BORD2.220e-542.42Peptidase A2 domain-containing protein n=2 Tax=unc... [more]
A0A2T4BK76_9HYPO5.290e-541.67Ankyrin (Fragment) n=1 Tax=Trichoderma citrinoviri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11277contigEcto-sp8_S_contig11277:109..1053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score233.8
Seed ortholog evalue6.2e-59
Seed eggNOG ortholog2880.D7G8A8
Model size531
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Cds size531
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143206.5763707-CDS-Ecto-sp8_S_contig11277:108..2211681143206.5763707-CDS-Ecto-sp8_S_contig11277:108..221Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11277 109..221 +
1681143206.587219-CDS-Ecto-sp8_S_contig11277:635..10531681143206.587219-CDS-Ecto-sp8_S_contig11277:635..1053Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11277 636..1053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11277.1641.1prot_Ecto-sp8_S_contig11277.1641.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11277 109..1053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11277.1641.1

>prot_Ecto-sp8_S_contig11277.1641.1 ID=prot_Ecto-sp8_S_contig11277.1641.1|Name=mRNA_Ecto-sp8_S_contig11277.1641.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=177bp
DLARVLVTEGDAELELRNNKGDTALSLACFWGNEDAVEYLLNAGADPNSR
NDAGERPGEKFDSVFVPQVVENFFTADEDNERASAAGQEDIMFDDDDEED
IMFEELDEKDANLQEGDKKDVTVDDGEEKEPAENDDASLAGEEGGDGEPE
EEVLGPRENILQMLEEARAEAALETK*
back to top

mRNA from alignment at Ecto-sp8_S_contig11277:109..1053+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11277.1641.1 ID=mRNA_Ecto-sp8_S_contig11277.1641.1|Name=mRNA_Ecto-sp8_S_contig11277.1641.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=945bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11277:109..1053+ (Ectocarpus species8 EcLAC_412)
GACCTTGCGCGAGTACTCGTCACGGAAGGCGACGCGGAACTAGAGCTGCG
CAATAACAAGGGGGACACGGCGCTGAGCTTGGCTTGCTTCTGGGGAAACG
AGGATGCGGTCGAGTGAGTGAAACCTGGGCCGAATCTTTATGTTCAATCC
CACCAAATGGTAGTTCAAACCGGGATCCCTGCCACTGCCCTGCAGAAGCA
TACCACGCTACGAGGGAGACCATCCACGGAGGTGGCCGTGTGGTCAAGGG
TACAACATCTAACCTCAAAAGGCTGGTGACATTTTTCGTGCGCCTCCACC
GTCCCACTCTCCATGCCTTCACACGTTGTGGCTTTTGTGAAAAGCTTGCC
ATGTCGGCATGACGCTTTGACAACGAGGAGCACCGAGATCGATTCCTCCA
AAGTGTACCTTTGGATGTAGAGAAGACATGGGTCGTTTCTGTTCACTCTT
CTCTCTCACCTCCCTACGCTGTGCATACTACATCAAGGGTTCATATTTCA
TGCTTGTTTGTCTTCGTGTGTTGAAAGGTATCTTCTCAACGCCGGAGCGG
ACCCGAACAGCCGTAACGACGCGGGTGAGCGGCCCGGAGAAAAGTTCGAC
TCTGTTTTCGTGCCCCAAGTTGTCGAGAACTTCTTCACCGCGGACGAAGA
CAACGAACGCGCAAGTGCCGCCGGCCAGGAAGACATCATGTTCGACGACG
ATGACGAAGAGGACATCATGTTCGAGGAATTAGATGAAAAGGACGCCAAT
CTTCAAGAGGGAGATAAAAAAGACGTGACGGTTGACGACGGAGAGGAGAA
GGAACCCGCGGAGAATGACGACGCATCGTTGGCAGGGGAGGAGGGTGGAG
ATGGCGAGCCAGAGGAAGAGGTTCTAGGCCCAAGGGAAAACATCCTCCAG
ATGCTGGAAGAAGCGCGGGCAGAAGCGGCCCTCGAGACCAAGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11277:109..1053+

>mRNA_Ecto-sp8_S_contig11277.1641.1 ID=mRNA_Ecto-sp8_S_contig11277.1641.1|Name=mRNA_Ecto-sp8_S_contig11277.1641.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11277:109..1053+ (Ectocarpus species8 EcLAC_412)
GACCTTGCGCGAGTACTCGTCACGGAAGGCGACGCGGAACTAGAGCTGCG
CAATAACAAGGGGGACACGGCGCTGAGCTTGGCTTGCTTCTGGGGAAACG
AGGATGCGGTCGAGTATCTTCTCAACGCCGGAGCGGACCCGAACAGCCGT
AACGACGCGGGTGAGCGGCCCGGAGAAAAGTTCGACTCTGTTTTCGTGCC
CCAAGTTGTCGAGAACTTCTTCACCGCGGACGAAGACAACGAACGCGCAA
GTGCCGCCGGCCAGGAAGACATCATGTTCGACGACGATGACGAAGAGGAC
ATCATGTTCGAGGAATTAGATGAAAAGGACGCCAATCTTCAAGAGGGAGA
TAAAAAAGACGTGACGGTTGACGACGGAGAGGAGAAGGAACCCGCGGAGA
ATGACGACGCATCGTTGGCAGGGGAGGAGGGTGGAGATGGCGAGCCAGAG
GAAGAGGTTCTAGGCCCAAGGGAAAACATCCTCCAGATGCTGGAAGAAGC
GCGGGCAGAAGCGGCCCTCGAGACCAAGTAA
back to top