mRNA_Ecto-sp8_S_contig11272.1636.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11272.1636.1
Unique NamemRNA_Ecto-sp8_S_contig11272.1636.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig11272.1636.1 vs. uniprot
Match: D8LHU9_ECTSI (Diacylglycerol kinase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU9_ECTSI)

HSP 1 Score: 601 bits (1549), Expect = 6.630e-211
Identity = 297/315 (94.29%), Postives = 301/315 (95.56%), Query Frame = 1
Query:    1 MPRLQDGPAGGDDNSNVNKHRRAAAAGEPQQSSAGMAVGAGIAARTTEQLADAWRVWPVMTISAVHSAVKGWFTRMDAALLGLPRGLGPAVSSLIRLLSLAIAASIVTSVITRTSQDLLKLPSRASKAVGDPPSHTPGRHNWVAAPSRWDPHYCSVCSEAIAWNSDAGVRCQICGSHAHASCSKRAHKEGFGCKTLCSTDVEMSHKRLYHPLEEAEDEDDDACLLPEPEDKPPPVMRHQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCVWCKLQVHEGCISRMAHTECSLGRHRRLILPPIAVLKDQPRKKR 945
            MPRLQDGPAGGDD+SNVNKH+RAAAAGEPQQSSAGMAVGAGIAARTTEQLADAWR+WPVMTISAVHSAVKGWFTRMDAALLGLPRGLGPAVSSLIRLLSLAIAASIVTSVITRTSQDLLKLPSRASKAVGDP S+TPGRHNWVAAPSRWDPHYCSVCSEAIAWNSDAGVRCQICGSHAHASCSKRAHKEGFGCKTLCS DVEMSHKRLYHPLEEAEDED      PE    PPPVMRHQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSC WCKLQVHEGCISRMAHTECSLGRHRRLILPP AVLKDQPRKKR
Sbjct:    1 MPRLQDGPAGGDDSSNVNKHKRAAAAGEPQQSSAGMAVGAGIAARTTEQLADAWRIWPVMTISAVHSAVKGWFTRMDAALLGLPRGLGPAVSSLIRLLSLAIAASIVTSVITRTSQDLLKLPSRASKAVGDPSSYTPGRHNWVAAPSRWDPHYCSVCSEAIAWNSDAGVRCQICGSHAHASCSKRAHKEGFGCKTLCSADVEMSHKRLYHPLEEAEDEDXXXXXXPEXXXXPPPVMRHQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCAWCKLQVHEGCISRMAHTECSLGRHRRLILPPTAVLKDQPRKKR 315          
BLAST of mRNA_Ecto-sp8_S_contig11272.1636.1 vs. uniprot
Match: A0A6H5LB27_9PHAE (Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB27_9PHAE)

HSP 1 Score: 593 bits (1529), Expect = 4.610e-199
Identity = 294/315 (93.33%), Postives = 297/315 (94.29%), Query Frame = 1
Query:    1 MPRLQDGPAGGDDNSNVNKHRRAAAAGEPQQSSAGMAVGAGIAARTTEQLADAWRVWPVMTISAVHSAVKGWFTRMDAALLGLPRGLGPAVSSLIRLLSLAIAASIVTSVITRTSQDLLKLPSRASKAVGDPPSHTPGRHNWVAAPSRWDPHYCSVCSEAIAWNSDAGVRCQICGSHAHASCSKRAHKEGFGCKTLCSTDVEMSHKRLYHPLEEAEDEDDDACLLPEPEDKPPPVMRHQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCVWCKLQVHEGCISRMAHTECSLGRHRRLILPPIAVLKDQPRKKR 945
            MPRLQDGPAGGDDNSNVNKHRRAAAAGEPQQSSAGMAVGAGIAARTTEQLADAWR+WPVMTISAVHSAVKGWFTRMDAALLGLPRGLGPAVSSLIRLLSLAIAASIVTSVITRTSQDLLKLPSRASKAVGDP S+TPGRHNWVAAPSRWDPHYCSVCSEAIAWNSDAGVRCQICGSHAHASCSKRAHKEG GCKTLCS DVE SHKRLYHPLEEAEDE       P     PPPVMRHQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSC WCKLQVHEGCISR+ HTECSLGRHRRLILPPIAVLKDQPRKKR
Sbjct:   11 MPRLQDGPAGGDDNSNVNKHRRAAAAGEPQQSSAGMAVGAGIAARTTEQLADAWRIWPVMTISAVHSAVKGWFTRMDAALLGLPRGLGPAVSSLIRLLSLAIAASIVTSVITRTSQDLLKLPSRASKAVGDPSSYTPGRHNWVAAPSRWDPHYCSVCSEAIAWNSDAGVRCQICGSHAHASCSKRAHKEGLGCKTLCSADVETSHKRLYHPLEEAEDEXXXXXXXPXXXXXPPPVMRHQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCAWCKLQVHEGCISRVTHTECSLGRHRRLILPPIAVLKDQPRKKR 325          
BLAST of mRNA_Ecto-sp8_S_contig11272.1636.1 vs. uniprot
Match: A0A5D6Y0E8_9STRA (Diacylglycerol kinase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0E8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 9.430e-15
Identity = 58/185 (31.35%), Postives = 79/185 (42.70%), Query Frame = 1
Query:  412 GRHNWVAAPSRWDPHYCSVCSEAIAWNSDAGVRCQICGSHAHASCSKRAHKEGFGCKTLCSTDVEMSHKRLYHPLEEAEDEDDDAC----LLPEPEDKPPPVMRHQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCVWCKLQVHEGCIS--RMAHT-----ECSLGRHRRLILPPIAVLKDQP 933
            G H W    +   P +C++C   +       V C ICG +AHA C+    K  F      S       K    P          AC    +    + + PP  RH W++G+ID    C+ CG  C    A    G  C WC ++VHE C +    +H      +C  GRHRRLILPP AV+  +P
Sbjct:   67 GMHQWRPG-NLAGPQWCNICESIVYGIRSYVVTCDICGMYAHAQCAATTTKPKFKAAAAAS-------KPAASPC---------ACKAAAVSSRAQAQQPP--RHLWVKGNIDPMDTCSLCGLFCGSILALS--GMKCAWCHMRVHENCFTAHETSHRHVFLRQCDFGRHRRLILPPAAVVVLEP 230          
BLAST of mRNA_Ecto-sp8_S_contig11272.1636.1 vs. uniprot
Match: A0A836CH11_9STRA (Diacylglycerol kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH11_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.200e-11
Identity = 73/251 (29.08%), Postives = 100/251 (39.84%), Query Frame = 1
Query:  196 HSAVKGWFTRMDAALLG-LPRG-LGPAVSSLIRLLSLAIAASIVTSVITRTSQDLLKL----PSRASKAVGDPPSHTPGRHNWVAAPSRW-----DPHYCSVCSEAIAWNSDAGVRCQICGSHAHASCSKRAHKEGFGCKTLCSTDVEMSHKRLYHPLEEAEDEDDDACLLPEPEDKPPPVMR---HQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCVWCKLQVHEGCISRMAHTECSLGRHRRLILP 906
             SA +G   R+D  +L  LP     P V  L+RL        ++  ++ R S   +      P R+ K  G      PGRH+WV           DP YC +C E     SD  ++C IC   AH  C +++     G    C     +   +L  P      ++    L P  +     +     HQ +  S+   +PCA CG        TGQ    C WC   +H  C        CSLGRHRRLILP
Sbjct:   45 QSAFQGVVQRLDDVVLWTLPSSWANPLVVMLVRL--------VIFYLLVRASAFFISAARFKPLRSDKVGG---KFVPGRHSWVQIKETGLLRTLDPRYCGICKEVAHGISDGAMQCSICSCRAHNRCLRKS-----GASLPCKA---VHRGQLLAPFPARAQKE---LLAPSGQRGALAIATRTPHQLVGCSVAAGKPCACCG-ELFRDERTGQR---CTWCGGNLHNRCARSFGDRCCSLGRHRRLILP 269          
BLAST of mRNA_Ecto-sp8_S_contig11272.1636.1 vs. uniprot
Match: A0A1X7VU47_AMPQE (Diacylglycerol kinase n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VU47_AMPQE)

HSP 1 Score: 66.2 bits (160), Expect = 2.060e-8
Identity = 50/177 (28.25%), Postives = 72/177 (40.68%), Query Frame = 1
Query:  418 HNWVAAPSRWDPHYCSVCSEAIAWNSDAGVRCQICGSHAHASCSKRAHKEGFGCKTLCSTDVEMSHKRLYHPLEEAEDEDDDACLLPEPEDKPPPVMRHQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCVWCKLQVHEGCIS------RMAHTECSLGRHRRLILPPIAVLKDQ 930
            H W+A+     P YC+ C +  A    +G  C++CG      C + A          C   V  S K                 L  +P +K    MRH W+RG++  +  C  C   C    A     + C+WC   VHE CI       R    +C+LG H+RLI+PP  V  ++
Sbjct:   91 HRWLASDFLDKPTYCNSCMQCCA----SGSLCEVCGL---CVCPEEA----------CLQSVATSSKTC-------------KPLSTQPGEK---TMRHAWIRGNLPLASRCFKCLTPCGTVPALAD--YRCLWCHNTVHEDCIDEEKGEGRRERGDCTLGDHKRLIIPPNCVTLEE 232          
BLAST of mRNA_Ecto-sp8_S_contig11272.1636.1 vs. uniprot
Match: T2M296_HYDVU (Diacylglycerol kinase (Fragment) n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M296_HYDVU)

HSP 1 Score: 64.7 bits (156), Expect = 6.730e-8
Identity = 46/170 (27.06%), Postives = 68/170 (40.00%), Query Frame = 1
Query:  412 GRHNWVAAPSRWDPHYCSVCSEAIA-WNSDAGVRCQICGSHAHASCSKRAHKEGFGCKTLCSTDVEMSHKRLYHPLEEAEDEDDDACLLPEPEDKPPPVMRHQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCVWCKLQVHEGCISRMAHTECSLGRHRRLILPPIAV 918
            G+H W     +    YC++C  A+  ++   G+ C  C    H  C KR         T   + ++ +                              VM H W+ G+   S  C+ C  +   +  TG H   CVWC+ +VH  C+  M   ECSLG+HR  ILPPI +
Sbjct:   87 GKHQWQMKHFK-SQAYCNICHSALTGFHRKQGLVCIFCHFTCHERCVKRVPNSCIQTYTESKSKMKAT------------------------------VMDHHWVEGNC--SGKCSKCNKTIKMNCLTGLH---CVWCQAKVHNRCVQYM-QVECSLGKHRVHILPPICI 219          
BLAST of mRNA_Ecto-sp8_S_contig11272.1636.1 vs. uniprot
Match: A0A8B7DT16_HYDVU (Diacylglycerol kinase n=3 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7DT16_HYDVU)

HSP 1 Score: 64.7 bits (156), Expect = 7.490e-8
Identity = 46/170 (27.06%), Postives = 68/170 (40.00%), Query Frame = 1
Query:  412 GRHNWVAAPSRWDPHYCSVCSEAIA-WNSDAGVRCQICGSHAHASCSKRAHKEGFGCKTLCSTDVEMSHKRLYHPLEEAEDEDDDACLLPEPEDKPPPVMRHQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCVWCKLQVHEGCISRMAHTECSLGRHRRLILPPIAV 918
            G+H W     +    YC++C  A+  ++   G+ C  C    H  C KR         T   + ++ +                              VM H W+ G+   S  C+ C  +   +  TG H   CVWC+ +VH  C+  M   ECSLG+HR  ILPPI +
Sbjct:  279 GKHQWQMKHFK-SQAYCNICHSALTGFHRKQGLVCIFCHFTCHERCVKRVPNSCIQTYTESKSKMKAT------------------------------VMDHHWVEGNC--SGKCSKCNKTIKMNCLTGLH---CVWCQAKVHNRCVQYM-QVECSLGKHRVHILPPICI 411          
BLAST of mRNA_Ecto-sp8_S_contig11272.1636.1 vs. uniprot
Match: F0WTL9_9STRA (Diacylglycerol kinase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WTL9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.400e-7
Identity = 34/76 (44.74%), Postives = 42/76 (55.26%), Query Frame = 1
Query:  709 RHQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCVWCKLQVHEGCIS--RMAHT---ECSLGRHRRLILPPIAVL 921
            +H W+RG+ D    C+ C   C GS  T   G  C WC ++VHE C S  R  H     C LGRHR+ ILPP AV+
Sbjct:  109 QHFWVRGNTDPMDKCSICDMFC-GSILT-LSGMKCAWCHVRVHESCFSAQRSRHQTLRRCELGRHRKSILPPYAVI 182          
BLAST of mRNA_Ecto-sp8_S_contig11272.1636.1 vs. uniprot
Match: A0A2Y9JWJ5_ENHLU (Diacylglycerol kinase n=10 Tax=Caniformia TaxID=379584 RepID=A0A2Y9JWJ5_ENHLU)

HSP 1 Score: 61.2 bits (147), Expect = 1.070e-6
Identity = 40/156 (25.64%), Postives = 57/156 (36.54%), Query Frame = 1
Query:  457 YCSVCSEAIAWNSDAGVRCQICGSHAHASCSKRAHKEGFGCKTL--CSTDVEMSHKRLYHPLEEAEDEDDDACLLPEPEDKPPPVMRHQWMRGSIDDSQPCAACGGSCAGSGATGQHGFSCVWCKLQVHEGCISRMAHTECSLGRHRRLILPPIAV 918
            +C+VC +A+       +RC++C  H H  C        F C     C  D    H   +H                             W  G++     C  C  +C  S      G  C WC +Q H  C + +A  EC+ GR R L+LPP+ V
Sbjct:  141 FCAVCRKAL---EAPALRCEVCELHVHPDCVP------FACSDCRQCHWDGHRDHDTHHH----------------------------HWREGNLPSGARCEVCRKTCGSSDVLA--GLRCEWCGVQAHSVCSAVLA-PECTFGRLRTLVLPPVCV 256          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11272.1636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LHU9_ECTSI6.630e-21194.29Diacylglycerol kinase (Partial) (Fragment) n=1 Tax... [more]
A0A6H5LB27_9PHAE4.610e-19993.33Diacylglycerol kinase n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A5D6Y0E8_9STRA9.430e-1531.35Diacylglycerol kinase n=1 Tax=Pythium brassicum Ta... [more]
A0A836CH11_9STRA1.200e-1129.08Diacylglycerol kinase n=1 Tax=Tribonema minus TaxI... [more]
A0A1X7VU47_AMPQE2.060e-828.25Diacylglycerol kinase n=2 Tax=Amphimedon queenslan... [more]
T2M296_HYDVU6.730e-827.06Diacylglycerol kinase (Fragment) n=1 Tax=Hydra vul... [more]
A0A8B7DT16_HYDVU7.490e-827.06Diacylglycerol kinase n=3 Tax=Hydra vulgaris TaxID... [more]
F0WTL9_9STRA5.400e-744.74Diacylglycerol kinase n=1 Tax=Albugo laibachii Nc1... [more]
A0A2Y9JWJ5_ENHLU1.070e-625.64Diacylglycerol kinase n=10 Tax=Caniformia TaxID=37... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11272contigEcto-sp8_S_contig11272:1109..5993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score601.7
Seed ortholog evalue2e-169
Seed eggNOG ortholog2880.D8LHU9
Preferred nameDGKK
Model size945
KEGG rclassRC00002,RC00017
KEGG koko:K00901
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006638,GO:0006639,GO:0006793,GO:0006796,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0009611,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0023052,GO:0030168,GO:0032501,GO:0035556,GO:0042060,GO:0044237,GO:0044238,GO:0044255,GO:0044464,GO:0046339,GO:0046486,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051716,GO:0065007,GO:0065008,GO:0071704,GO:0071944
Exons7
EggNOG free text desc.diacylglycerol kinase activity
EggNOG OGsKOG1170@1,KOG1170@2759
EC2.7.1.107
Cds size945
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11272.1636.1prot_Ecto-sp8_S_contig11272.1636.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11272 1109..5993 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143206.2121153-CDS-Ecto-sp8_S_contig11272:1108..13901681143206.2121153-CDS-Ecto-sp8_S_contig11272:1108..1390Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11272 1109..1390 +
1681143206.2243361-CDS-Ecto-sp8_S_contig11272:2523..26421681143206.2243361-CDS-Ecto-sp8_S_contig11272:2523..2642Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11272 2524..2642 +
1681143206.2330272-CDS-Ecto-sp8_S_contig11272:3587..37021681143206.2330272-CDS-Ecto-sp8_S_contig11272:3587..3702Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11272 3588..3702 +
1681143206.2413225-CDS-Ecto-sp8_S_contig11272:4262..43821681143206.2413225-CDS-Ecto-sp8_S_contig11272:4262..4382Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11272 4263..4382 +
1681143206.2495666-CDS-Ecto-sp8_S_contig11272:4590..47011681143206.2495666-CDS-Ecto-sp8_S_contig11272:4590..4701Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11272 4591..4701 +
1681143206.2645383-CDS-Ecto-sp8_S_contig11272:5001..50851681143206.2645383-CDS-Ecto-sp8_S_contig11272:5001..5085Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11272 5002..5085 +
1681143206.2728202-CDS-Ecto-sp8_S_contig11272:5879..59931681143206.2728202-CDS-Ecto-sp8_S_contig11272:5879..5993Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11272 5880..5993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11272.1636.1

>prot_Ecto-sp8_S_contig11272.1636.1 ID=prot_Ecto-sp8_S_contig11272.1636.1|Name=mRNA_Ecto-sp8_S_contig11272.1636.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=315bp
MPRLQDGPAGGDDNSNVNKHRRAAAAGEPQQSSAGMAVGAGIAARTTEQL
ADAWRVWPVMTISAVHSAVKGWFTRMDAALLGLPRGLGPAVSSLIRLLSL
AIAASIVTSVITRTSQDLLKLPSRASKAVGDPPSHTPGRHNWVAAPSRWD
PHYCSVCSEAIAWNSDAGVRCQICGSHAHASCSKRAHKEGFGCKTLCSTD
VEMSHKRLYHPLEEAEDEDDDACLLPEPEDKPPPVMRHQWMRGSIDDSQP
CAACGGSCAGSGATGQHGFSCVWCKLQVHEGCISRMAHTECSLGRHRRLI
LPPIAVLKDQPRKKR
back to top

mRNA from alignment at Ecto-sp8_S_contig11272:1109..5993+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11272.1636.1 ID=mRNA_Ecto-sp8_S_contig11272.1636.1|Name=mRNA_Ecto-sp8_S_contig11272.1636.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4885bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11272:1109..5993+ (Ectocarpus species8 EcLAC_412)
ATGCCCCGCTTGCAGGACGGGCCGGCCGGGGGCGATGACAACAGCAACGT CAACAAGCACAGGCGGGCAGCGGCGGCAGGAGAACCGCAGCAGAGCTCGG CCGGCATGGCTGTCGGTGCGGGCATCGCCGCGCGGACGACGGAGCAACTG GCGGACGCTTGGCGGGTCTGGCCGGTGATGACGATTTCAGCCGTGCACTC GGCGGTGAAGGGCTGGTTCACACGGATGGATGCTGCCCTTCTTGGGCTGC CAAGGGGGCTAGGACCAGCGGTGTCGTCGTTGGTGAGCGAAACGCTGGTC CTGCATGCATTCGTTCTTGACCCGCAAACTTTATTCGGCCACCTTGAAGC GTCTGTGCACCTTTGCTCAGCGCTAGAGGAATCAACGTTGCAGTCGGAGC GTTGTTCTACGAACAAGGTGCTCATCTTAGGGTGCCGTGCCATCTGTCAA TCCGCGCATTTTTGAACTGGTTTCACGTCTCCGCTCGATTGACGCACAGA GGGACAGAAGTCCCGCCGCACCGCAAAAGTGCTCTGTGCGCAGCGTCGAC GGGAGCAGTCAGTCGGGGCAAGCATGCCCTCGATCATGCATACGACGTGT CTCGTTGACACACGCACGGCAATGCTTCGTTTTTCACCTCAAGAGCGTAG ACACGTGGTGCAAGTCGAAGTCTGTAATTTTTGTCTACATTATTGAGGGC AACAGCAGCTAGCTACGTGTTCTCTTGTAGCTACAAACACCTTCATAAGT GTGTGTTGCGGTGGACGTAGGAACGCCTCCTAGCGACCAGATGGAAACCG GAAAACATGGTGAATCTATGAATCGAGCAGAAGAGGGGAAGGTGCTACAC TCACACACCACTACATCAATCCTTTCGCAGTAGTCATGTTCAACTCTACA GCTGCCCTGCCCCTCAGGGTGCCAGCTACGTGTTCGAAAACAAACACCAT CGTGACATCCGGCTCAAGACCTACTAGTGCAATATACATATGCATACCCC TGCACACGTGCCCTATTGATCCACGTGCAAAGCCGATGTAAGCGAAATGG CAGTGAGATGCAGAACTACCGTGGGAGACGGACAGATGGCACCGGTCGGG TAGATGGTACCGGTCGGAGAGATCGCACGGGCGCCACCATAAGAAAACAG AAGAAAAAAACCGTAACAATAATAAAACGATCGCGCCTGGTGCCATCTCT CCGCCTCCTACATACGGTAACTCCTGTAAGTGCGTTATGGCTCCCTTCTT TTTTTCTCTTCATGCAGGTCCCCGAACACGGGTGCTAGGTGGTGATGCCC TCCTCTGCTGTGTTGTTGATTCCTTTTGCCTCAGCCGTTTGTTCTGTCTG CCCCGCCGCCCCCTTGGGCACGCGCGTGCGCTGCGCACACAACCTCCCCT TCATCCCCCTGGCAGATTCGTCTCTTGTCGCTGGCGATCGCCGCTTCCAT AGTCACCTCAGTGATCACCAGGACTTCCCAGGACCTGCTGAAGCTGCCAT CGAGGGCTTCCAAGGCCGTTGGAGACCCTCCCAGGTACACCCAAGCTCTT GCTCCCGCTCTGCGTGGCTGGCATGCATGCGCAGCGTGCTCTTCTTTATC GTATACAGAAACAATACAATATCGTTTATTTCCACAGGTCAAGAGTCAAG GATATACTCATGTTTTCGGTTTTTGGCACCTTCTTTGCCCCGTGAAGAAC GAAGTACACGGAATGGGTGTGGCATTCAGAGGGCTACAGCACTGCCAGGA CCACTGGCTTATCTTGTTGTAGTTGAAAGGTGGTGCTTGCATTGCTTGCA CTCGGCTTCCTCGGACCTACGAGCTACCCCTGCACCCTCACGGCGAACCA CAATCGAATCTGAAACCGATTTCGCAACTGTCGAGGCCCTGCCTACCATC CTCCAGTTGTCGTCGCACGTTTCCCGGTGGCCACAATCTAGCCTTAAGTC GATATTAGCCCTGAGCCTGGTCTCAAACTTGCTCTGAGAGCGCCCGAGGC AGTCCGGAAACTTTCGATGATGGCGTGAACCCACATAAGGTTGACTATCG GTAGCATATTGCAAACCCAGCCGCCTTTCCAAGCTCGCTATTCCGCCTAA GTACATGGAAGGTCAAGATAAACACCAGCCCCCCAATCCCTTTCTTGTCG CCACCAATTCCGTGTTCTGGAAGTTGGCCTTGAGAATATGTGTGTACACA CCGCTTGCGCGTTTTTGTTTTGAGGCTATCAGTATCGCCCCGGGTGTCGT TTCGTTATCCACTACTCTCTCGTTGCTGTCGCACTTTTTGAGATCCCTTC ACCCGGTTTTGTGGTGGGTTGGCGTACGTACCCGCACACGACAACTTACT ACTGAAAATGTTTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCCGACTCTC TCTCTCTCTGTCATCGTTCCCCAAATCCCGCTGTCGATGCCTGCGGGATA CCCTCACCACGCTCACACGTCGGTTACAGCCACACTCCGGGAAGGCACAA CTGGGTGGCGGCTCCCTCTCGGTGGGACCCGCACTACTGCAGCGTGTGCA GCGAAGCCATCGCATGGAACTCAGACGCCGGCGTCCGTTGCCAGGTGGGT CGTCATGCCGTTGTAGATTCGTTAATGATCGTGGAGCTCCTAGGCTGCAA ATTATCGTTACACTCATGCTAATTGGTGCCTGGCGCTACTGCTGTAACGT GACGTGGCAGCAACGCCGTGGGGGTTCGTGGGTAGGTATTGGAAGTCAAC GAATGCGTGCTACGAGATCAGGCCGAGGCAGCGTTGGCAATCGTGCTTGA CGGGCTTGCCAGTTGTTTCTAGCGTGACCCTTGCTGTTCGTCGGCTACGC ATGGTTATGGGCGGCGGTTGTTATTTCCAAGACACTGTGATGTTTTGTCC AGTCTCCGGGAGGAAGCTTTTGGCCATGGGTTGTTGTGTGTCCCTGGTTA TTCCTTGCCTTCCGGTAGTCTACTCGCGCTTGCGCGGAGTAGAAAAAATC ACACCTCTTTACCGTTCGGGAACTGCGGTGTAGCCCACCCTCCCGTTTGC GGAACGGAGGCGGTTCCCAGTGCTGCGCCCCCTCCCCCCCCTCGAACATT TGATGTTAAATGCCGCCCTCTTGTTCCGCGACGTCCCTCATCGTTCCGTT GCAGATTTGCGGGTCGCATGCGCATGCGAGCTGCAGCAAGCGCGCCCATA AGGAAGGGTTCGGATGCAAGACCCTGTGCAGCACAGACGTGGAGATGTCT CACAAGCGGCTGTATCATCCACTGGTATGTGTGCTGCCCGTTTTGTGGTT GTCATGGTGGTTCGTAGGCTACGAGTAGCAGTGCCGCTAGCATAAGTTCC ATTCATGTTCGGTGTTTTTTTGTTTTTGATCAGTTTTGTTCTGCTGTCGA CCGTTCACTGACCACGTATATGTTGCAATTTCATCGTAAACATGATATGG CTATACTGCTGCTGTGCGGCGGACGTTTCCAGGAGGAGGCCGAGGACGAA GACGACGACGCTTGCCTCCTCCCGGAGCCGGAGGACAAGCCTCCTCCTGT CATGCGGCACCAGTGGATGCGCGGGAGCATCGACGACTCTCAGGTAGACA CGGCGTCAGTGCGTTCACACACGAGGTCTGCGCGTGTTTTGTGTGTGTCT TAGTTTTTCCCATTGAACGCGCCTACCCGGCTGGCCATATGAATAGACGT CAGTGTCAATGAGATTATAGTAACGGAGAATTGTGTGTGTGTGTGTGTAT GTGTGTGTGTGTTTATTGTTTGCATCGACCGTGCTAACTAACCTACTGAC CTATTCATTAGACTTGAGTCTCAGTGCGACTAATAACGGAGACTGCTGTG TGTTTTGTTTTTTGTTTGCTGTGCTGTGCTGCGAACCTGGTAGCCGTGTG CCGCCTGCGGAGGTTCTTGCGCTGGCAGCGGCGCCACGGGACAGCACGGG TTCTCCTGCGTCTGGTGTAAGCTACAGGTGAACCGGCCGTGATGCAGAGA GGAGAATTTTTTTTGCCGGAGTCTCGTCGGCACAACGCTAGCGGTACCAA TAGTTGTGGCCAGGTTTTGATGTAGTGCGGTCCCTATGGACAACCCAGCG CTGTTTTGGTAGAGAACAGGATGTGTTTGGTGACCAACACATTACTCGCA TACTCTCCTCCAGGGATATTTAAAGCATTGTGGAGTGTTCTTAGTTTGGT TCGGCACCACCTACAAACGACCCCATTGACTTCCCCCAGCAACGGTTGAG ATGCCGGTTGAAGGCCGCATCCGTGCCATCACCCGGTGATGTACTACGCC GAAAGCTTCGTACACAGCCGTCACCGCGTCGTCGTCCATACCACAATAAT TGCCTTAGAGGATTGTGCCATGTTGTCGTTTACCACTTTTTAGCTGGAGA GGATGGTGTACCGCTGGCTGGAGAGGATTTGTGATGTTGTGTGGTTGGGG GCGCCTCGGAAATACGAAAAAGCGCCGGCCTGCTACGCTTCTGTGTCCCC TTTCGCCACCCCTATCGTCGCCACGCAACATGGAATTTAAGCCGTGGAAG CCAGGCCTTGTGGCCGGGACGGACGTGATTACTTGCCAAGGAAGGAAAAA TCAAACGAACCCCTTCGAACGGGGTGTCATGTCGCTCACAGCAGTAGTAT TTCTTCGATGTTGTGAAGAATTTTTCGACGGACGAGGTGGCCAGAAACTG CTGGTCTGGTGCTTGTTTTTTAGGTTGGTGCCCCCTTGTTGTTGACTTTG TCTTCGTTTCGCCCCCCTCAGGTGCACGAGGGCTGCATCTCCCGCATGGC CCACACGGAGTGCTCGCTCGGCCGACACCGCCGGTTGATCCTCCCGCCGA TCGCCGTGCTCAAGGACCAGCCGCGAAAAAAACGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11272:1109..5993+

>mRNA_Ecto-sp8_S_contig11272.1636.1 ID=mRNA_Ecto-sp8_S_contig11272.1636.1|Name=mRNA_Ecto-sp8_S_contig11272.1636.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=945bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11272:1109..5993+ (Ectocarpus species8 EcLAC_412)
ATGCCCCGCTTGCAGGACGGGCCGGCCGGGGGCGATGACAACAGCAACGT
CAACAAGCACAGGCGGGCAGCGGCGGCAGGAGAACCGCAGCAGAGCTCGG
CCGGCATGGCTGTCGGTGCGGGCATCGCCGCGCGGACGACGGAGCAACTG
GCGGACGCTTGGCGGGTCTGGCCGGTGATGACGATTTCAGCCGTGCACTC
GGCGGTGAAGGGCTGGTTCACACGGATGGATGCTGCCCTTCTTGGGCTGC
CAAGGGGGCTAGGACCAGCGGTGTCGTCGTTGATTCGTCTCTTGTCGCTG
GCGATCGCCGCTTCCATAGTCACCTCAGTGATCACCAGGACTTCCCAGGA
CCTGCTGAAGCTGCCATCGAGGGCTTCCAAGGCCGTTGGAGACCCTCCCA
GCCACACTCCGGGAAGGCACAACTGGGTGGCGGCTCCCTCTCGGTGGGAC
CCGCACTACTGCAGCGTGTGCAGCGAAGCCATCGCATGGAACTCAGACGC
CGGCGTCCGTTGCCAGATTTGCGGGTCGCATGCGCATGCGAGCTGCAGCA
AGCGCGCCCATAAGGAAGGGTTCGGATGCAAGACCCTGTGCAGCACAGAC
GTGGAGATGTCTCACAAGCGGCTGTATCATCCACTGGAGGAGGCCGAGGA
CGAAGACGACGACGCTTGCCTCCTCCCGGAGCCGGAGGACAAGCCTCCTC
CTGTCATGCGGCACCAGTGGATGCGCGGGAGCATCGACGACTCTCAGCCG
TGTGCCGCCTGCGGAGGTTCTTGCGCTGGCAGCGGCGCCACGGGACAGCA
CGGGTTCTCCTGCGTCTGGTGTAAGCTACAGGTGCACGAGGGCTGCATCT
CCCGCATGGCCCACACGGAGTGCTCGCTCGGCCGACACCGCCGGTTGATC
CTCCCGCCGATCGCCGTGCTCAAGGACCAGCCGCGAAAAAAACGT
back to top