mRNA_Ecto-sp8_S_contig11272.1635.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11272.1635.1
Unique NamemRNA_Ecto-sp8_S_contig11272.1635.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11272.1635.1 vs. uniprot
Match: D8LHU8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHU8_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 8.950e-7
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = -2 
Query:  328 MGNCCDCFGKNDGTGSYLHTPGGKS 402
            MGNCCDCFGKNDGTGSYLH+P G S
Sbjct:    1 MGNCCDCFGKNDGTGSYLHSPRGGS 25
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11272.1635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHU8_ECTSI8.950e-788.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11272contigEcto-sp8_S_contig11272:181..601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size421
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143206.145336-UTR-Ecto-sp8_S_contig11272:180..2021681143206.145336-UTR-Ecto-sp8_S_contig11272:180..202Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11272 181..202 +
1681143206.1648967-UTR-Ecto-sp8_S_contig11272:535..6011681143206.1648967-UTR-Ecto-sp8_S_contig11272:535..601Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11272 536..601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143206.154937-CDS-Ecto-sp8_S_contig11272:202..5351681143206.154937-CDS-Ecto-sp8_S_contig11272:202..535Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11272 203..535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11272.1635.1prot_Ecto-sp8_S_contig11272.1635.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11272 203..535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11272.1635.1

>prot_Ecto-sp8_S_contig11272.1635.1 ID=prot_Ecto-sp8_S_contig11272.1635.1|Name=mRNA_Ecto-sp8_S_contig11272.1635.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=111bp
MMTCVHMTHLDRLSKLDYSIAESVAASKMAGLEPSRRELSENAFLDYGIP
ILFGMESSLQKRSVGTVWYLTYVRERLQVALILPSYYVLRAGCCDSLGSN
RDDLPPGVCR*
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mRNA from alignment at Ecto-sp8_S_contig11272:181..601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11272.1635.1 ID=mRNA_Ecto-sp8_S_contig11272.1635.1|Name=mRNA_Ecto-sp8_S_contig11272.1635.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=421bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11272:181..601+ (Ectocarpus species8 EcLAC_412)
ACTCGCAACCTTAAAGTACTTCATGATGACCTGTGTACATATGACACACC
TTGACAGATTGTCAAAGCTCGATTACTCCATAGCAGAAAGTGTGGCGGCG
TCGAAAATGGCGGGGTTGGAACCATCTCGTCGAGAGCTTTCCGAAAACGC
ATTCCTTGATTATGGCATCCCAATCCTCTTCGGCATGGAATCGAGCTTGC
AAAAACGGTCCGTGGGTACAGTATGGTATCTTACGTACGTGCGTGAACGA
CTCCAAGTTGCGCTGATATTGCCGTCCTATTACGTACTGCGAGCTGGCTG
TTGCGACTCGCTCGGAAGCAATCGTGATGACTTACCTCCCGGGGTGTGCA
GATAGCTGCCCGTTCCGTCATTTTTCCCGAAGCAATCACAGCAGTTCCCC
ATGCTGTAGCGATGGTTTCCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11272:181..601+

>mRNA_Ecto-sp8_S_contig11272.1635.1 ID=mRNA_Ecto-sp8_S_contig11272.1635.1|Name=mRNA_Ecto-sp8_S_contig11272.1635.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11272:181..601+ (Ectocarpus species8 EcLAC_412)
ATGATGACCTGTGTACATATGACACACCTTGACAGATTGTCAAAGCTCGA
TTACTCCATAGCAGAAAGTGTGGCGGCGTCGAAAATGGCGGGGTTGGAAC
CATCTCGTCGAGAGCTTTCCGAAAACGCATTCCTTGATTATGGCATCCCA
ATCCTCTTCGGCATGGAATCGAGCTTGCAAAAACGGTCCGTGGGTACAGT
ATGGTATCTTACGTACGTGCGTGAACGACTCCAAGTTGCGCTGATATTGC
CGTCCTATTACGTACTGCGAGCTGGCTGTTGCGACTCGCTCGGAAGCAAT
CGTGATGACTTACCTCCCGGGGTGTGCAGATAG
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