mRNA_Ecto-sp8_S_contig11271.1634.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11271.1634.1
Unique NamemRNA_Ecto-sp8_S_contig11271.1634.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11271.1634.1 vs. uniprot
Match: D8LNT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNT6_ECTSI)

HSP 1 Score: 375 bits (964), Expect = 1.410e-127
Identity = 228/254 (89.76%), Postives = 229/254 (90.16%), Query Frame = 1 
Query:    1 MIIHSGLARHISVLLGYFYPALASAKTAVQQDPAAFTQWMTYWVVMSVFALVEIFVDFFVSWVPFYYEAKIVLIVWLAMPRYQASLSAGASQIYRRLLHPYLDKYEDNIDSGLEEMRAGATRRIQSLGASAATEIAKAVTKQGSTA-------------KDLMLARVLGIAAAGGAGALDERPVRSAPTSPIPRPTNDAEGNSRRVALEXXXXXXXXXXXXXXXX--ANTSMLLDFMEVMKAGVFVQARSSLAG 717
            MIIHSGLARHISVLLGYFYPALASAKTAVQQDPAAFTQWMTYWVVMSVFALVE+FVDFFVSWVPFYYEAKIVLIVWLAMPRYQ     GASQIYRRLLHPYLDKYEDNIDSGLEEMRAGATRRIQSLGASAATEIAKAVTKQGSTA             KDLMLARVLGIAAAGGAGALDERPVRSAPTSPIPRPTNDAE NSRR    XXXXXXXXXXXXXXXX  ANTSMLLDFMEVMKAGVFVQARSSLAG
Sbjct:    1 MIIHSGLARHISVLLGYFYPALASAKTAVQQDPAAFTQWMTYWVVMSVFALVEVFVDFFVSWVPFYYEAKIVLIVWLAMPRYQ-----GASQIYRRLLHPYLDKYEDNIDSGLEEMRAGATRRIQSLGASAATEIAKAVTKQGSTAVGVAACRRMDRSFKDLMLARVLGIAAAGGAGALDERPVRSAPTSPIPRPTNDAEENSRRXXXXXXXXXXXXXXXXXXXXXXANTSMLLDFMEVMKAGVFVQARSSLAG 249
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11271.1634.1 vs. uniprot
Match: A0A7S2WB49_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WB49_9STRA)

HSP 1 Score: 111 bits (278), Expect = 3.130e-27
Identity = 51/122 (41.80%), Postives = 80/122 (65.57%), Query Frame = 1 
Query:   19 LARHISVLLGYFYPALASAKTAVQQDPAAFTQWMTYWVVMSVFALVEIFVDFFVSWVPFYYEAKIVLIVWLAMPRYQASLSAGASQIYRRLLHPYLDKYEDNIDSGLEEMRAGATRRIQSLG 384
            L R +   LGYFYPA  S K   Q D A  TQW+T+W+V + F++ E+F D  +SWVPFYY+AK+ +++WL +P +      GA+ +Y +++ PYL +YE +ID G+E ++  + + I +LG
Sbjct:    5 LTRILCHCLGYFYPAYQSYKAVKQNDAALHTQWLTFWIVNTYFSIAEVFGDTLLSWVPFYYQAKVFILIWLVLPYFN-----GATTLYEKVIDPYLHRYEKDIDRGVETVKNRSVKVIGNLG 121
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11271.1634.1 vs. uniprot
Match: A0A2R5GG17_9STRA (Receptor expression-enhancing protein 4 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GG17_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.610e-26
Identity = 51/127 (40.16%), Postives = 82/127 (64.57%), Query Frame = 1 
Query:    1 MIIHSGLARHISVLLGYFYPALASAKTAVQQDPAAFTQWMTYWVVMSVFALVEIFVDFFVSWVPFYYEAKIVLIVWLAMPRYQASLSAGASQIYRRLLHPYLDKYEDNIDSGLEEMRAGATRRIQSL 381
            M++   LAR +   LGY YPA  S K     DP+  TQW+T+W+V + F+  E F D  +SW+PFYYEAK+ +++WL  P+++     GA++IY R++ PYL +YE +ID+ L+ ++  + R + +L
Sbjct:    1 MLVGELLARPVCHFLGYLYPAYQSYKAVKANDPSLHTQWLTFWIVNTYFSFAETFGDTLLSWLPFYYEAKVAVLIWLVAPQFK-----GATKIYERVVDPYLHRYEKDIDANLDHVKRRSARELGNL 122
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11271.1634.1 vs. uniprot
Match: A0A8J9ZSM0_BRALA (REEP2 protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZSM0_BRALA)

HSP 1 Score: 102 bits (253), Expect = 2.600e-22
Identity = 55/149 (36.91%), Postives = 82/149 (55.03%), Query Frame = 1 
Query:   19 LARHISVLLGYFYPALASAKTAVQQDPAAFTQWMTYWVVMSVFALVEIFVDFFVSWVPFYYEAKIVLIVWLAMPRYQASLSAGASQIYRRLLHPYLDKYEDNIDSGLEEMRAGATRRIQSLGAS----AATEIAKAVTKQGSTAKDLML 453
            ++R + +L G  YPA AS K    ++   + +WM YW+V ++F  VE F D F+SWVPFYYE KIV +VWL  P      + G+S IYR+ +HP + K E  ID  + +    +   +  +G S    AAT +AK   K   T  + ++
Sbjct:    6 ISRFVVLLFGTLYPAYASYKAVKTKNVREYVKWMMYWIVFAIFTFVETFADVFISWVPFYYEVKIVFVVWLLSP-----YTKGSSFIYRKFVHPAMSKREKEIDEYIAQASERSYETMVKMGKSGLNMAATAVAKTAIKGQQTITERLI 149
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11271.1634.1 vs. uniprot
Match: UPI00023E8597 (receptor expression-enhancing protein 2-like n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00023E8597)

HSP 1 Score: 99.0 bits (245), Expect = 5.410e-22
Identity = 54/137 (39.42%), Postives = 80/137 (58.39%), Query Frame = 1 
Query:    1 MIIHSGLARHISVLLGYFYPALASAKTAVQQDPAAFTQWMTYWVVMSVFALVEIFVDFFVSWVPFYYEAKIVLIVWLAMPRYQASLSAGASQIYRRLLHPYLDKYEDNID---SGLEEMRAGATRRIQSLGASAATE 402
            M++ S  +R + V++G  YPA  S K    +D   +T WM YW+V ++F   E F D F+SW+PFYYE KIV+++WLA+P  Q     GA  +YRRL+H  L   E+ ID   S   ++  G  R+  S+  + A+E
Sbjct:    1 MVLTSLFSRLVIVIVGVLYPAYCSFKAVKYKDHREYTTWMMYWIVFAIFLTAETFSDVFLSWLPFYYEIKIVIVIWLALPYTQ-----GAKTLYRRLIHHKLVDSENQIDEFVSNAGQVSFGLVRKASSVVVNHASE 132
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11271.1634.1 vs. uniprot
Match: C3ZZ30_BRAFL (Receptor expression-enhancing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZZ30_BRAFL)

HSP 1 Score: 97.1 bits (240), Expect = 6.770e-22
Identity = 53/133 (39.85%), Postives = 74/133 (55.64%), Query Frame = 1 
Query:   37 VLLGYFYPALASAKTAVQQDPAAFTQWMTYWVVMSVFALVEIFVDFFVSWVPFYYEAKIVLIVWLAMPRYQASLSAGASQIYRRLLHPYLDKYEDNIDSGLEEMRAGATRRIQSLGAS----AATEIAKAVTK 423
            +L G  YPA AS K    ++   + +WM YW+V ++F  +E F D F+SWVPFYYE KIV +VWL  P      + G+S IYR+ +HP L K E  ID  + +    +   +  +G S    AAT +AK   K
Sbjct:    8 LLFGTLYPAYASYKAVKTKNVREYVKWMMYWIVFALFTCMETFADVFISWVPFYYEVKIVFVVWLLSP-----YTKGSSFIYRKFVHPALSKREKEIDEYIAQASERSYETMVKMGKSGLNMAATAVAKTAIK 135
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11271.1634.1 vs. uniprot
Match: A0A6P4ZNP2_BRABE (Receptor expression-enhancing protein n=5 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZNP2_BRABE)

HSP 1 Score: 100 bits (248), Expect = 2.800e-21
Identity = 54/149 (36.24%), Postives = 82/149 (55.03%), Query Frame = 1 
Query:   19 LARHISVLLGYFYPALASAKTAVQQDPAAFTQWMTYWVVMSVFALVEIFVDFFVSWVPFYYEAKIVLIVWLAMPRYQASLSAGASQIYRRLLHPYLDKYEDNIDSGLEEMRAGATRRIQSLGAS----AATEIAKAVTKQGSTAKDLML 453
            ++R + +L G  YPA AS K    ++   + +WM YW+V ++F  VE F D F+SW+PFYYE KIV +VWL  P      + G+S IYR+ +HP + K E  ID  + +    +   +  +G S    AAT +AK   K   T  + ++
Sbjct:    6 ISRFVVLLFGTLYPAYASYKAVKTKNVREYVKWMMYWIVFALFTFVETFADVFISWMPFYYEVKIVFVVWLLSP-----YTKGSSFIYRKFVHPAMSKREKEIDEYIAQASERSYETMVKMGKSGLNMAATAVAKTAIKGQQTITERLI 149
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11271.1634.1 vs. uniprot
Match: A0A0N4V1Y5_ENTVE (Receptor expression-enhancing protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4V1Y5_ENTVE)

HSP 1 Score: 97.4 bits (241), Expect = 2.980e-21
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 1 
Query:   19 LARHISVLLGYFYPALASAKTAVQQDPAAFTQWMTYWVVMSVFALVEIFVDFFVS-WVPFYYEAKIVLIVWLAMPRYQASLSAGASQIYRRLLHPYLDKYEDNIDSGLEEMRAGATRRIQSLG 384
            L+R I +  G  YPA  S K    +D   + +WM YW+V ++F ++E F D F+S W+PFYYE KIV ++WL  P      + GAS +YR+ +HP L ++E +ID+ LE+ ++ +  R+  LG
Sbjct:    6 LSRLIILTAGTLYPAYRSYKAVRSRDVREYVKWMMYWIVFALFCVIETFADIFISFWLPFYYEFKIVFVLWLLSP-----WTKGASILYRKWVHPTLSRHEKDIDTMLEQAKSESYNRVLRLG 123
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11271.1634.1 vs. uniprot
Match: A0A6P7FRD0_DIAVI (Receptor expression-enhancing protein n=2 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FRD0_DIAVI)

HSP 1 Score: 99.8 bits (247), Expect = 3.830e-21
Identity = 50/141 (35.46%), Postives = 80/141 (56.74%), Query Frame = 1 
Query:    7 IHSGLARHISVLLGYFYPALASAKTAVQQDPAAFTQWMTYWVVMSVFALVEIFVDFFVSWVPFYYEAKIVLIVWLAMPRYQASLSAGASQIYRRLLHPYLDKYEDNIDSGLEEMRAGATRRIQSLGASAATEIAKAVTKQG 429
            I S L+R + +L+G  YPA AS K    ++   + +WM YW+V ++F  VE F D F SW PFYYE KI+L++WL  P      + G+S +YR+ +HP L   E  ID  + + +  + R++  +G+   + + +   K G
Sbjct:    2 ISSILSRLVILLIGTLYPAYASYKAVRTKNVREYVKWMMYWIVFALFTCVETFTDVFFSWFPFYYEVKIILVIWLLSPA-----TKGSSILYRKFVHPTLSSREQEIDEYISKAKEQSYRQVLDIGSKGVSALMQTAIKGG 137
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11271.1634.1 vs. uniprot
Match: UPI0016002500 (receptor expression-enhancing protein 2-like isoform X6 n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016002500)

HSP 1 Score: 100 bits (248), Expect = 4.350e-21
Identity = 54/139 (38.85%), Postives = 78/139 (56.12%), Query Frame = 1 
Query:   19 LARHISVLLGYFYPALASAKTAVQQDPAAFTQWMTYWVVMSVFALVEIFVDFFVSWVPFYYEAKIVLIVWLAMPRYQASLSAGASQIYRRLLHPYLDKYEDNIDSGLEEMRAGATRRIQSLGAS----AATEIAKAVTK 423
            ++R + +L G  YPA AS K    ++   + +WM YW+V ++F  +E F D F+SWVPFYYE KIV +VWL  P      + G+S IYR+ +HP L K E  ID  + +    +   +  +G S    AAT +AK   K
Sbjct:    6 ISRFVVLLFGTLYPAYASYKAVKTKNVREYVKWMMYWIVFALFTCMETFADVFISWVPFYYEVKIVFVVWLLSP-----YTKGSSFIYRKFVHPALSKREKEIDEYIAQASERSYETMVKMGKSGLNMAATAVAKTAIK 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11271.1634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNT6_ECTSI1.410e-12789.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WB49_9STRA3.130e-2741.80Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5GG17_9STRA1.610e-2640.16Receptor expression-enhancing protein 4 n=1 Tax=Ho... [more]
A0A8J9ZSM0_BRALA2.600e-2236.91REEP2 protein n=2 Tax=Branchiostoma lanceolatum Ta... [more]
UPI00023E85975.410e-2239.42receptor expression-enhancing protein 2-like n=1 T... [more]
C3ZZ30_BRAFL6.770e-2239.85Receptor expression-enhancing protein (Fragment) n... [more]
A0A6P4ZNP2_BRABE2.800e-2136.24Receptor expression-enhancing protein n=5 Tax=Bran... [more]
A0A0N4V1Y5_ENTVE2.980e-2139.84Receptor expression-enhancing protein n=1 Tax=Ente... [more]
A0A6P7FRD0_DIAVI3.830e-2135.46Receptor expression-enhancing protein n=2 Tax=Diab... [more]
UPI00160025004.350e-2138.85receptor expression-enhancing protein 2-like isofo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11271contigEcto-sp8_S_contig11271:252..4087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score374.8
Seed ortholog evalue3e-101
Seed eggNOG ortholog2880.D8LNT6
Model size717
KEGG koko:K17279
Hectar predicted targeting categorysignal peptide
Exons7
EggNOG free text desc.mitotic nuclear envelope reassembly
EggNOG OGsCOG5052@1,KOG1726@2759
Cds size717
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11271.1634.1prot_Ecto-sp8_S_contig11271.1634.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11271 252..4087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143206.0627437-CDS-Ecto-sp8_S_contig11271:251..4621681143206.0627437-CDS-Ecto-sp8_S_contig11271:251..462Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11271 252..462 -
1681143206.073399-CDS-Ecto-sp8_S_contig11271:1249..13171681143206.073399-CDS-Ecto-sp8_S_contig11271:1249..1317Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11271 1250..1317 -
1681143206.0845044-CDS-Ecto-sp8_S_contig11271:1728..19021681143206.0845044-CDS-Ecto-sp8_S_contig11271:1728..1902Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11271 1729..1902 -
1681143206.0948856-CDS-Ecto-sp8_S_contig11271:2135..22141681143206.0948856-CDS-Ecto-sp8_S_contig11271:2135..2214Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11271 2136..2214 -
1681143206.103441-CDS-Ecto-sp8_S_contig11271:2532..25891681143206.103441-CDS-Ecto-sp8_S_contig11271:2532..2589Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11271 2533..2589 -
1681143206.112052-CDS-Ecto-sp8_S_contig11271:3149..32421681143206.112052-CDS-Ecto-sp8_S_contig11271:3149..3242Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11271 3150..3242 -
1681143206.120318-CDS-Ecto-sp8_S_contig11271:4052..40871681143206.120318-CDS-Ecto-sp8_S_contig11271:4052..4087Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11271 4053..4087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11271.1634.1

>prot_Ecto-sp8_S_contig11271.1634.1 ID=prot_Ecto-sp8_S_contig11271.1634.1|Name=mRNA_Ecto-sp8_S_contig11271.1634.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=239bp
MIIHSGLARHISVLLGYFYPALASAKTAVQQDPAAFTQWMTYWVVMSVFA
LVEIFVDFFVSWVPFYYEAKIVLIVWLAMPRYQASLSAGASQIYRRLLHP
YLDKYEDNIDSGLEEMRAGATRRIQSLGASAATEIAKAVTKQGSTAKDLM
LARVLGIAAAGGAGALDERPVRSAPTSPIPRPTNDAEGNSRRVALEEEEE
EEEEEEEESMAAANTSMLLDFMEVMKAGVFVQARSSLAG
back to top

mRNA from alignment at Ecto-sp8_S_contig11271:252..4087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11271.1634.1 ID=mRNA_Ecto-sp8_S_contig11271.1634.1|Name=mRNA_Ecto-sp8_S_contig11271.1634.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3836bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11271:252..4087- (Ectocarpus species8 EcLAC_412)
ATGATCATCCACTCGGGCCTGGCGAGGCACATCTCGTGAGTGACAATGCG
ATGAGCTAGGCTGCTGCCGTATATCTCTTTGTAGGTGCTTGCTTGCCCCC
TTACAACAACCAAGCACAGCAACAATCTGTGCGTAACCTTGGGTGCGAAC
GGGAACACACCATGGATTGGGCATGGGGCAGGGGCACCAAGCTTGAGCAG
CACCAGAGTAGAGTCCCGTGAGGCGCCGATGGGATCTTGTGTAACTCTCT
TCGCTCTCTTGTCCAGTGTCCAAGCTTTCCGACGTTGTCACCTTTGGGTG
CACTCCGATTAGAAATACAACGGTTGTCAGAGCAACACGTCGAGATGTAC
AAGTACACTGCTGTTGTGTACACAGCTGTGTTTTCTCGTGTGTGACACGC
CTGTGGGTTTGACATTATTGTAAGGTTATCCAGCCAAAAGCGAGTTGTGC
ACCTTGTCCTTCAAACACTGGTCTATGTCCACTTGTGCCGACGTCTTGCC
AATCACCCGCCAATACTCGACCGCAGCGGTTGTTGAATGCTACAACTTCG
TTTGCGGTACCACCGTCTGGGCTAGTTTCCTCGTTACGTCAGGAAGGAGC
GCGCGGTGTGGCGCACGTGCAAAGACAGTGAGCGAAGCCGCCTAAGCGGG
AGGCACCCTGCCCTAAGAGCTCGTGCTATTGTACACATGTACTTTCCTGG
TACCTGGTACCATTCATCCTTGGTACACAACAACACGCGTTGACCGACCG
CCCTTCCTCTCTTTTGCTGTCCGTATATTCTCTGTCTTTCCCCTCGGTCC
GTCCGAAACTCGTGAAATTGCCTCATCGGTACATTTTGTCGGAAGGGTTC
TGCTGGGCTACTTCTATCCCGCGCTGGCATCGGCGAAGACCGCCGTACAG
CAAGACCCCGCCGCGTTCACGCAGTGGATGACGTACTGGTGCGAAGGCAC
TTTCCCCTTTGTGATTCGCACCGTGGTCATAGCTGTGTGTAGTGGCATGC
AATACCTCGTCGTATCCTCGCGGGGTGGCTCATTCGTTCCCAACACCATG
TCGGACGCACGGATCTTTGCCAGGCCTCGTCTGTTTTGCCACTGCACGAT
TTCGTTTCGTTGGTGCACACTCTTACCTGTTGTTGGCGTTGTCGCGGTAC
GCGTCCAGGGCACCTCTAGAAGGAAGTGCCCTCCCGGTTTACGCGGCTAT
TGTGCTGTCCTACAAGTGATGGAAATAGCGCCTCGTACAAAACTGGTGCC
CAGTATACACGCTCGTGAGGTGCCTTCACAAGCGTCCTGGATTGCTGTGT
TTCAGGTTCATGTGTAGGCCGGTTGTGTGGCCCTTGTCAGGCCATGGGAG
GTCCGCAACAAGCGATCCCTACGTTGTTCCTCCCCCCATCGGCTGACCCT
CTTGAGATCGACTCGTGTTCGTGCAGCCGTTCCTTCTCGGTCTTTTGTCA
TTGGAAACCTTACCCCCGGCGTTACTGGCGTGTCGCTCGCCTTTGCAGGG
TGGTCATGTCCGTGTTTGCTTTGGTGGAGATATTCGTGGACTTCTTCGTC
TCATGGTGAGATGAGTGCAAAAAGGGCGAAGCGTGCGTTTTTGCGATACG
GTGTACCTCTTTCTCTCCTCAATCCCTGGGGAAGCGCAGTCGATCTTATA
CCCAGTAGGCATACCTGGGTGTGCCAACTCTGCGCTATCATCGGCGGGAT
CCGGTTCTCAGACATCGCTCGTGTCTGAAACGCCTTGGACAAATCTTGCT
CGCCCTATACGCTGCTGCATCATGGACCATGTGATTGATCGCCTCACGTA
CCCCCCTTGTTTGCGGCCTCCCGACGTCACGTGTTGGTGTGTGTTCTGCC
TGTGCCGTGCCGTCCTTGGACAGGGTGCCCTTCTACTACGAGGCGAAGAT
CGTGCTGATCGTGTGGCTCGCTATGCCGAGATACCAGGCAAGCCTTTCGG
CCGTGCGTGGCTTGAACGGTAGTTTTTGCGTGGGTTGGTACAGTAGTTGC
CCCGTTTTTGATTCCTTCAGCGCGAGACTCAGCTCTTACTAGTGGTATCC
CCGCGAAACAAGAGAACTACCATGTATGTATTTTGTTTCTTCATGAAGGC
GATGCCACTTTACCTATGTTTGACACCTCATTCCGCTCAGCCTTTTCCCG
CCACGCCCCGCGGGTCATCAAACCGACTTGGACAGGGCGCTAGCCAGATC
TACCGCAGGCTGCTGCATCCCTACCTGGACAAGTACGAAGATAACATCGA
CAGCGGCTTGGAAGAAATGAGGGCCGGGGCCACCCGCCGGATCCAGTCCT
TAGGGGCCAGCGCCGCTACGGAGATCGCGAAGGCGGTTACAAAACAGGGA
TCCACGGCGGTAGGGGTCGCTGCATGCAGGCGGACGGATCGGTCTTTCGC
CACGTTGGAGACCGTTGGAGACGTTGGAAGGGCGGTGAATTCTTCCCCGA
ACCCCGGGAGTTGCATGATGCGCGATGGTGTCCTGCTAGTGCCAATTGCC
TGCATAGGCCGTGTGGGGCTGTTTTTCTCTCTTCTGTGTTGGGTGGTTGA
TCTGTATGAGGGCACATGAAGCGAGTGTGCAAACAGCGCTGGGTGTCGTG
CCCGGTTGGGTTGGTATCCTTCCTCCTATTCAACGGCGTTTTTGTTTTTT
TTCGTTGGTTTACCTCCGCCCACGCCGTGCTCGTCTTGTCCCTCTCCGCC
GGCTCATTGCTATCACCCCGCTCCTGGTGTTACCCCTATCCGCAATTGCG
TTGCCTCCGTTGGATGACAGAAAGATCTCATGCTGGCGCGTGTGCTTGGC
ATCGCAGCTGCCGGGGGTGCGGGCGCGCTCGATGAAAGGTGAACTGCCGT
TTTCTCTTGCCTGTGTGTGTTCGTTGCTGGTGATCCCCCCCCCCCTAGAA
TACTATCGTCACACCGCGTCCATCATGTCATGCCATGTCATCTTCTCAAT
CCGGAAGACATGAATAGGCTACCATCCCCTCTCCCTGGTATTTTCGAAGT
CAAAGTTCATCTACGGAAGACGGGGCCGCAGTTCCGTCCCAGCCTCTATG
AATGGTCATGTTCGCAGCCCCCTCACGACCGGTTGGCCTCGAGTGTCTCA
CGCTCGGATGATTTGATGTTTGGTCGTGTAGTGAAGTGTAGCCTCACAAG
AAGGAAAAACAGCGGGGGTGAGGGAAAGTGGAACACAGACCGCGTCAGCC
GCCAAAACGCGGAGACCAAAGTCACCCCGCGTCATAATGGAGCCAGTGCT
CCCAACCGACATGAGGCCGTCATTGCCGGAGAGGTCATACCGACACCCAT
CACACGTGCAGATGCATCTGAAAACCCTCTGTGTTTCCCGAAGTCAGCGC
CCGTCAGCGATTTTGCGACGATGTCTGCATGCGATTCCTTTGTCCGGGAC
GTAGTCCACCCCGATCTTTCTAGTCTACCAAGCCCTGGCGAAATGGTACC
GCAGGCCGACGGAGCCAGTGTTTCCAACCGACGCGCCAAGCACAGTCAGT
GGTGGAGAGCTCATGACGAGAGGTCAACGGCAAAGACTCATGACAAGCGG
CCACCGCACACCCTTCCCACCATCAATACACGAAGCCTTGTTGCTTGTCC
ATGGATGTCTTTGTTTTTTCGCCAGGCCCGTGCGGTCTGCTCCTACTTCA
CCCATCCCTCGGCCAACGAACGATGCCGAGGGAAATTCGCGAAGGGTAGC
TCTAGAGGAGGAAGAGGAGGAAGAGGAGGAGGAGGAGGAGGAATCAATGG
CCGCTGCGAACACCAGCATGCTGCTAGACTTCATGGAGGTTATGAAGGCC
GGGGTGTTTGTGCAGGCACGGTCCTCGCTCGCCGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11271:252..4087-

>mRNA_Ecto-sp8_S_contig11271.1634.1 ID=mRNA_Ecto-sp8_S_contig11271.1634.1|Name=mRNA_Ecto-sp8_S_contig11271.1634.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=717bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11271:252..4087- (Ectocarpus species8 EcLAC_412)
ATGATCATCCACTCGGGCCTGGCGAGGCACATCTCGGTTCTGCTGGGCTA
CTTCTATCCCGCGCTGGCATCGGCGAAGACCGCCGTACAGCAAGACCCCG
CCGCGTTCACGCAGTGGATGACGTACTGGGTGGTCATGTCCGTGTTTGCT
TTGGTGGAGATATTCGTGGACTTCTTCGTCTCATGGGTGCCCTTCTACTA
CGAGGCGAAGATCGTGCTGATCGTGTGGCTCGCTATGCCGAGATACCAGG
CAAGCCTTTCGGCCGGCGCTAGCCAGATCTACCGCAGGCTGCTGCATCCC
TACCTGGACAAGTACGAAGATAACATCGACAGCGGCTTGGAAGAAATGAG
GGCCGGGGCCACCCGCCGGATCCAGTCCTTAGGGGCCAGCGCCGCTACGG
AGATCGCGAAGGCGGTTACAAAACAGGGATCCACGGCGAAAGATCTCATG
CTGGCGCGTGTGCTTGGCATCGCAGCTGCCGGGGGTGCGGGCGCGCTCGA
TGAAAGGCCCGTGCGGTCTGCTCCTACTTCACCCATCCCTCGGCCAACGA
ACGATGCCGAGGGAAATTCGCGAAGGGTAGCTCTAGAGGAGGAAGAGGAG
GAAGAGGAGGAGGAGGAGGAGGAATCAATGGCCGCTGCGAACACCAGCAT
GCTGCTAGACTTCATGGAGGTTATGAAGGCCGGGGTGTTTGTGCAGGCAC
GGTCCTCGCTCGCCGGT
back to top