mRNA_Ecto-sp8_S_contig11270.1633.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11270.1633.1
Unique NamemRNA_Ecto-sp8_S_contig11270.1633.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11270.1633.1 vs. uniprot
Match: A0A6H5KB96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB96_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 7.440e-56
Identity = 88/93 (94.62%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:  130 LPLPSLDAIDRPRAPRIKGVSFQQEVEVFLVTHNSELDLRAKQALWWTGREAAMNKRAWLHHLGQPGCGRESVDQQPRPYQPKRHRSSPSHYL 408
            LPLPS DA+DRPRAPRIKGVSFQQEVEVFLVTHNSELDLRAKQALWWTGR+AAMNKRAWLHHLGQPGCGRESV QQPRPYQPKRHRSSPSH+L
Sbjct:   95 LPLPSQDAVDRPRAPRIKGVSFQQEVEVFLVTHNSELDLRAKQALWWTGRDAAMNKRAWLHHLGQPGCGRESVGQQPRPYQPKRHRSSPSHFL 187
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11270.1633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KB96_9PHAE7.440e-5694.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11270contigEcto-sp8_S_contig11270:2859..6147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size411
Hectar predicted targeting categoryother localisation
Exons2
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143206.0262127-CDS-Ecto-sp8_S_contig11270:2858..31061681143206.0262127-CDS-Ecto-sp8_S_contig11270:2858..3106Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11270 2859..3106 +
1681143206.0359542-CDS-Ecto-sp8_S_contig11270:5985..61451681143206.0359542-CDS-Ecto-sp8_S_contig11270:5985..6145Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11270 5986..6145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11270.1633.1prot_Ecto-sp8_S_contig11270.1633.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11270 2859..6145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11270.1633.1

>prot_Ecto-sp8_S_contig11270.1633.1 ID=prot_Ecto-sp8_S_contig11270.1633.1|Name=mRNA_Ecto-sp8_S_contig11270.1633.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=136bp
DGGSSTSTSSSGTMSTFSSFDSLEAVDVDDSSSSSSSSSSSSPLPLPSLD
AIDRPRAPRIKGVSFQQEVEVFLVTHNSELDLRAKQALWWTGREAAMNKR
AWLHHLGQPGCGRESVDQQPRPYQPKRHRSSPSHYL
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mRNA from alignment at Ecto-sp8_S_contig11270:2859..6147+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11270.1633.1 ID=mRNA_Ecto-sp8_S_contig11270.1633.1|Name=mRNA_Ecto-sp8_S_contig11270.1633.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3289bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11270:2859..6147+ (Ectocarpus species8 EcLAC_412)
GACGGCGGTAGTAGCACCAGCACCAGCAGCTCTGGCACCATGTCCACGTT
CTCGAGCTTCGACTCCCTTGAAGCCGTGGACGTGGATGACTCTTCCTCCT
CCTCCTCCTCCTCTTCCTCCTCCTCGCCCCTGCCTCTCCCCTCCCTAGAC
GCCATCGATCGCCCCCGCGCTCCCAGAATAAAGGGCGTCAGCTTCCAGCA
GGAGGTGGAGGTGTTCCTCGTGACACACAACAGCGAGCTCGATCTCAGGT
CAGCAGCGGGGAAATTTATTTACGTCGGGAGAGCCATTTTTAATTAATTT
GTGTTGTAGCCTTGCTTGCTAGAACGGATTCAAAGAAAATCCTTCCCAAA
GCAACAAGAGAAGGAGAGTCTCGTCTACAAGCAGTACCTACCCCGTGAAT
AATTATTGTCCTGCTACCTGTAGGGCCAGATCATTACGTTAGGTTTAGGC
GATATTCCGCGCTCTTCTCTCTGCCGCGCGGGTTCAAAACAGCGATGGCA
GTACAACAGTCGACAGCGTTGGCAGTACAACAGTCGACGGTGTCGGCGTG
TGGGCGTGTTCGTTTCAACCTTTTTTAGTCTGCTACTGCTGTAGTGTCGT
TCCGTGCGTTGACGTTGGCATGAGCGGCGTTCCAGACCGCAGACGGCACT
ATTAATACAGATGACTTTATGATTGATTGGTCGATTATCTAAGCTACATA
TGCGTGCGTTACATGTCTACCTTCAGCCGTATGCATACAACAGACACAGC
TGTCAATTCTAGGTGGTAGTCGAGAGGGGTCATGCAATACACGAGTTTCC
GTGAGGAAGCGGGGAGGATATACTCGCGTACGTAACAGGCGTGCAACACA
CGCAGGTACGCTGTGGTACTGTATGATACAACGTTCATGCGCATGTGGCC
CGGCTCGGAAGACGACGATAAACAACGAAAACAGAAGCAGCAGCAACAGC
AGCATCGACCCAACATCTACCACATGTATACTTCCTCGACTTGCGCAGCA
GTTGGCAAGTCATACCGAGTAACTGGCAAGTTACGATGGCGGGTACGGGC
TGCTGCTTTTGCCGTATATCATACCATACGTACAAGTGTTTCGGATTGGC
CGACGAAACTGCTGTTTCTTCTGCCCTGCACGTCCGCACACAGCAGCACG
CATGGTATGCATATCGAAGCATGTGTCTGGAAGTCTGTAGAGGTCGCTTC
TCCTTTAGAACACAACGTGTCAACGGGAAAATAGGACGAAGAGCTCAAGG
CAAGGAAAGTGTTGTTGTTGTCTTCACTGGCATGGTATTGGTACGCGTGA
AAGAAACAAGAAACCGCCGCAGTGACACAACGTACTATGCATATTATACA
CGCCCTTTCGGTGAGGTGATAACAGCCGCAAATTCAAACATCTTCAGAGA
GGTGAATGGTTGTATGCGTAGATATTCCAACACCTCTCCTTGTCTTGGTG
ATTGGTGATACAACTCTGCCACGCTTCGAAAGTTGAACATTCCGGGGAGG
GAAATGCCGCTCCGACATCTCGTGGGTCAGATGTAGAATACCGTGGTGAG
ACTTACGGTCTATTTGCAACAACATGTCTTCCTGTGGCACCGCCGACGTA
GGTATAGGAGAGTTAAGACAGCACAGCAGATTGGGCAGGCGAGAGCGTCT
TGTGGGAGATTGATGCGAGCTGTGTCGCATGCCACAAGAGCGCTCGAGAT
GCTGACGACGCGGCAGTCCCGCCGGCTGGTATATCTCGATGCTTCTCTCG
ACAGCAGCATTGATGCTTTGCTGCTGCTGTTGCGACAACAGCACCAGTCC
CTTGGTTAATATTGGAATTTGGACAGCATTATATGTTTTGCCGCTCAGAG
ATGTCTATCTTGTTGGGGCTGGCGCCCACGCCCACAACGTGTGTGATGCG
CGAGGATACGTATTATTAACACAGGCGGGTCGTCAACGACACCAACCATG
ACCCCATCGCGGAATCATCACCCGCTAAGAGAGAAAACCAAAACATAAAG
CTCTTCCACAACAAAACCCACACCTACGGCTGTATGTACCTTCCGCGACT
ACATGTGTAAGGGATCCCACCGGCCGGATGCCGCCTAACAGGAGCAATAG
TTTCCCTGAGTTTGATGATAGGTGTCTCGTGTATAGTGCAAGCCAAGAGG
GGCACTAGATGACGAGATTGTCTTGACCACAGACGGTGAGCTGTCTGGAA
TGTTCACGAGCTAGCATAGGTCGAGGGAAGGTCATATTATAGCACCATGC
AACAACGAACTGCTCGACTTTCTACATGAGGACATGCGTGCAGCAGGCCA
TGTGCTACAGCGCGTCGTACAGGCGAGCCTACCGGTAGGCCGTGCTTTTC
CATGACAGTATATCGCAACAAAAATTGTGCAAACGCGCTTGGGTGTAAGG
ACGGTGGGGTGGAGTCCGCTTGCCGTGGCTCCCACGAACTCCAACAATAC
CATACAGACTTCGCCACCTTCGACTGCTATGGTTGTATCTCAAACGGGTA
GTCTTTTTGCGCTTTAATTCTCTTAAAAAATGGTATCCATCAACTGATGC
TTGTGGGTGCTGTGCAACAGAAGAAAAATCCCAGCAGGTGGCACCGTAGG
TTCTGTACTCTCCTGGGAGCTTATTTTGTTTTGTGCCACTTCTCGATTTT
CCCCAGTGACGGCAGGCATTTTTTGTGCCTCCCCTCTGGCGTCTTCTTTT
CGGCTTCTTGTGTGACCTTTTGCCGGGAGTCACCCAGAGAAGTCTCCTCA
TGGTGCATGCATGTCTTCCTTTTAATGCCGAGAAACAACGGCATTCCTCT
TCCCCTCGTCATCATGATTCACCTCTTTGTACCTAGGATTACGACACAGC
GTATATACGCACACGATGGTTTTATAGCACGGCGATGCCGTTTGTGCGAG
GTCCAGATGTTCGCGCCCTCCTCTCTTGACGTTTGGCGAGTCTCGTTTCT
GTCGATAGTAGCATGTGTATGGCACCCCTTTTCCATCAGTGTGTTCAGCG
TGCCCCCTTTCTTGTATTTTTGGTCGTACTTCAAACATGTCAAGTCCAAC
ACCATCAAGGCACACACCCTTGTTTAACGCCTCCCCTCCGTCCTTTCGTC
CAACTTTTGTTTGTTTTTTCTTGCCAGGGCCAAGCAAGCTCTCTGGTGGA
CCGGCCGAGAAGCGGCGATGAACAAGAGGGCCTGGCTCCACCACCTGGGG
CAACCCGGGTGCGGGCGCGAGAGCGTCGACCAGCAGCCCCGACCATACCA
ACCGAAGCGGCATCGCTCGTCGCCGTCTCACTATCTCGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11270:2859..6147+

>mRNA_Ecto-sp8_S_contig11270.1633.1 ID=mRNA_Ecto-sp8_S_contig11270.1633.1|Name=mRNA_Ecto-sp8_S_contig11270.1633.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11270:2859..6147+ (Ectocarpus species8 EcLAC_412)
GACGGCGGTAGTAGCACCAGCACCAGCAGCTCTGGCACCATGTCCACGTT
CTCGAGCTTCGACTCCCTTGAAGCCGTGGACGTGGATGACTCTTCCTCCT
CCTCCTCCTCCTCTTCCTCCTCCTCGCCCCTGCCTCTCCCCTCCCTAGAC
GCCATCGATCGCCCCCGCGCTCCCAGAATAAAGGGCGTCAGCTTCCAGCA
GGAGGTGGAGGTGTTCCTCGTGACACACAACAGCGAGCTCGATCTCAGGG
CCAAGCAAGCTCTCTGGTGGACCGGCCGAGAAGCGGCGATGAACAAGAGG
GCCTGGCTCCACCACCTGGGGCAACCCGGGTGCGGGCGCGAGAGCGTCGA
CCAGCAGCCCCGACCATACCAACCGAAGCGGCATCGCTCGTCGCCGTCTC
ACTATCTC
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