mRNA_Ecto-sp8_S_contig11243.1605.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11243.1605.1
Unique NamemRNA_Ecto-sp8_S_contig11243.1605.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig11243.1605.1 vs. uniprot
Match: A0A6H5KRN7_9PHAE (Thioesterase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRN7_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 5.140e-112
Identity = 157/165 (95.15%), Postives = 163/165 (98.79%), Query Frame = 1
Query:    1 RNFYANFTERALAKCGDYSGEKNIIEQDDVDRVEHEHILAWRAWVDLRHRVPKASARLFCCPWAGGNSLIFERWSEELPGVEVVPLLLPGRLTRARENAVTNLSDIVTMVVEAICGLHLLTHEDIPYFIYGHDFGALVAFEICRRVQDEFPMKALIVSSMSCPQM 495
            RNFYANFTERALAKCGDYSGEKNIIEQD VDRVEHEHILAWRAWVDLRHRVPKASARLFCCPWAGGNSL+FERWSEELPGVEVVPLLLPGRLTRARE+A+TNLSDIVTMVVEAICGLHLLTHEDIPYFIYGH+FGALVAFE CRRVQDEFP+KALIVSSMSCPQ+
Sbjct:   66 RNFYANFTERALAKCGDYSGEKNIIEQDGVDRVEHEHILAWRAWVDLRHRVPKASARLFCCPWAGGNSLMFERWSEELPGVEVVPLLLPGRLTRAREDAMTNLSDIVTMVVEAICGLHLLTHEDIPYFIYGHEFGALVAFETCRRVQDEFPVKALIVSSMSCPQV 230          
BLAST of mRNA_Ecto-sp8_S_contig11243.1605.1 vs. uniprot
Match: A0A097PUG7_9CYAN (Anatoxin-a synthetase A thioesterase type II n=4 Tax=Cuspidothrix issatschenkoi TaxID=230752 RepID=A0A097PUG7_9CYAN)

HSP 1 Score: 142 bits (358), Expect = 3.340e-37
Identity = 87/261 (33.33%), Postives = 142/261 (54.41%), Query Frame = 1
Query:  130 WVDLRHRVPKASARLFCCPWAGGNSLIFERWSEELP-GVEVVPLLLPGRLTRARENAVTNLSDIVTMVVEAICGLHLLTHEDIPYFIYGHDFGALVAFEICRRVQDE-FPMKALIVSSMSCPQMVHEREKMTSLCQVSPEGDILHAKNAEFESAMLRRGPPLPPELLENKDLMEIFTPLWFADLSAVDTYEYKSGTLLECPIYSLGGIKDGDQD---MSKWAMESSSGSSETTMFPGGSFFLLDRDNEVKILRLLRDLCTN 897
            WV      P+A+ RLFC P+AGG + +F  W++ELP  VEV  + +PGR  R  E  ++NL  +  ++VE       L + D P+ I+GH  GAL+ +E+ R++Q +      L VS  + P          +L ++ P   +L   +AEF   + +    +P  +L++KDLME+F P+  AD++ V+T+ +  G  L+CPI++LGG++D +     +  W  E + GS    MFPGG F+L   +N+  +L  +     N
Sbjct:    9 WVKCYQSNPEANLRLFCLPYAGGGTSVFRLWAQELPLNVEVCAIDMPGRERRMGEKPISNLESLTDILVEVF-----LQYLDKPFAIFGHSMGALIVYELSRKLQQKNISPVYLFVSGRAAP----------NLPELYPPLHLL--PDAEFTEKLSKVYNAIPDTVLKDKDLMELFLPVLRADMTLVETHIHSQGEPLDCPIFALGGLEDKEASYDFLVNWR-ECTRGSFSVQMFPGGHFYL--NENKQPLLEFISQTLKN 249          
BLAST of mRNA_Ecto-sp8_S_contig11243.1605.1 vs. uniprot
Match: UPI001685798F (Thioesterase n=4 Tax=unclassified Microcoleus TaxID=2642155 RepID=UPI001685798F)

HSP 1 Score: 139 bits (349), Expect = 9.010e-36
Identity = 91/247 (36.84%), Postives = 126/247 (51.01%), Query Frame = 1
Query:  118 AWRAWVDLRHRVPKASARLFCCPWAGGNSLIFERWSEELPG-VEVVPLLLPGRLTRARENAVTNLSDIVTMVVEAICGLHLLTHEDIPYFIYGHDFGALVAFEICRRVQDEFPMKAL--IVSSMSCPQMVHEREKMTSLCQVSPEGDILHAKNAEFESAMLRRGPPLPPELLENKDLMEIFTPLWFADLSAVDTYEYKSGTLLECPIYSLGGIKDGD---QDMSKWAMESSSGSSETTMFPGGSFFL 840
            A+ AWV      P+AS RLFC P+AG  S IF  W++ LP  +EV P+ LPGR TR  E   T L  +V  +        LL H D P+  +GH  GAL++FEI RR++ +  +  L   VS    PQ+      + +L    PE   L           LRR    P  +LEN +LM++  P+  AD +A++TY Y S   L+CPI + GG +D +     +  W  E +S +    MFPG  FFL
Sbjct:    8 AFNAWVMCPKPNPQASLRLFCFPYAGAGSQIFRTWAQSLPASIEVCPIELPGRGTRIMETPCTQLEPLVETLASV-----LLPHLDKPFAFFGHSMGALLSFEIVRRLRKKSNLLPLHLFVSGRQAPQIPDLNPPIHAL----PESAFLEE---------LRRYNGTPQAVLENAELMQLLLPILRADFAAIETYVYASEPPLDCPITAFGGFQDPEASCDQLEAWR-EQTSAAFSLQMFPGDHFFL 235          
BLAST of mRNA_Ecto-sp8_S_contig11243.1605.1 vs. uniprot
Match: K9X7X8_9NOST (Putative thioesterase involved in non-ribosomal peptide biosynthesis n=1 Tax=Cylindrospermum stagnale PCC 7417 TaxID=56107 RepID=K9X7X8_9NOST)

HSP 1 Score: 138 bits (348), Expect = 1.030e-35
Identity = 87/255 (34.12%), Postives = 137/255 (53.73%), Query Frame = 1
Query:  130 WVDLRHRVPKASARLFCCPWAGGNSLIFERWSEELPG-VEVVPLLLPGRLTRARENAVTNLSDIVTMVVEAICGLHLLTHEDIPYFIYGHDFGALVAFEICRRVQDEFPMKA-LIVSSMSCPQMVHEREKMTSLCQVSPEGDILHAKNAEFESAMLRRGPPLPPELLENKDLMEIFTPLWFADLSAVDTYEYKSGTLLECPIYSLGGIKDGDQD---MSKWAMESSSGSSETTMFPGGSFFLLDRDNEVKILRLL 879
            W+      P+A+ RLFC P+AGG + IF RW +ELP  VE+  + LPGR  R  E  ++NL  +   +VE      LL H D P+ ++GH  GAL+ +E+ R++Q +      L VS    P ++          ++ P   +L   +AEF   +      +P  +L++K+LME+F P+  ADL+ V+TY +     L+CPI +LGG++D +     +  W  E +  S    MFPGG F+L   +N   +L+L+
Sbjct:    9 WIKCPQSNPQANLRLFCLPYAGGGTSIFRRWPQELPSNVELCAIDLPGRENRIGEKPISNLEILTEKLVEV-----LLQHLDKPFALFGHSMGALIVYELARKLQQKNVNPVYLFVSGRPAPNVL----------ELYPPLHLL--PDAEFIEKLTNIYSAIPDAVLKDKELMELFLPVLRADLTLVETYIHSQVEPLDCPIVALGGLEDNEASHDYLVTWR-EYTRSSFSVEMFPGGHFYL--NENRQPLLQLI 243          
BLAST of mRNA_Ecto-sp8_S_contig11243.1605.1 vs. uniprot
Match: C4NCB6_9CYAN (Thioesterase n=2 Tax=Microcoleaceae TaxID=1892252 RepID=C4NCB6_9CYAN)

HSP 1 Score: 137 bits (345), Expect = 2.850e-35
Identity = 87/257 (33.85%), Postives = 137/257 (53.31%), Query Frame = 1
Query:  130 WVDLRHRVPKASARLFCCPWAGGNSLIFERWSEELPG-VEVVPLLLPGRLTRARENAVTNLSDIVTMVVEAICGLHLLTHEDIPYFIYGHDFGALVAFEICRRVQDEFPMKA-LIVSSMSCPQMVHEREKMTSLCQVSPEGDILHAKNAEFESAMLRRGPPLPPELLENKDLMEIFTPLWFADLSAVDTYEYKSGTLLECPIYSLGGIKDGDQD---MSKWAMESSSGSSETTMFPGGSFFLLDRDNEVKILRLLRD 885
            W+      P+A+ RLFC P+AGG + IF  W  ELP  VE+  + LPGR  R RE  ++NL  +   +VE       L H D P+ I+GH  GAL+A+++ R++Q        L VS    P +     ++ S   + P        NAEF   + +    +P  +L++++LME+F P+  ADL+ V+TY +     L+CPI++LGG++D +     ++ W  E +  S    MFPGG F+L   +N   +L+ L +
Sbjct:    9 WIKCPQSNPQANLRLFCLPYAGGGTSIFRLWPRELPSNVELCAIELPGRENRLREQPISNLEILTDKLVEVF-----LQHLDKPFAIFGHSMGALIAYDLARKLQQRNVNPVYLFVSGRPAPNL----PEIYSPIHLLP--------NAEFIEKLTKVYSAIPDVVLKDEELMELFLPVLRADLTLVETYIHCQVEPLDCPIFALGGLEDKEASHHYLAPWG-EYTRSSFSVQMFPGGHFYL--NENRQLLLQFLSE 245          
BLAST of mRNA_Ecto-sp8_S_contig11243.1605.1 vs. uniprot
Match: A0A2D5ZBZ3_9BACT (Putative thioesterase n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2D5ZBZ3_9BACT)

HSP 1 Score: 137 bits (344), Expect = 4.440e-35
Identity = 87/261 (33.33%), Postives = 136/261 (52.11%), Query Frame = 1
Query:   82 DDVDRVEHEHILAWRAWVDLRHRVPKASARLFCCPWAGGNSLIFERWSEELP-GVEVVPLLLPGRLTRARENAVTNLSDIVTMVVEAICGLHLLTHEDIPYFIYGHDFGALVAFEICRRVQD-EFPM-KALIVSSMSCPQMVHEREKMTSLCQVSPEGDILHAKNAEFESAMLRRGPPLPPELLENKDLMEIFTPLWFADLSAVDTYEYKSGTLLECPIYSLGGIKDGDQD---MSKWAMESSSGSSETTMFPGGSFFLLD 846
            DDV+R           W+ LR   P+A  RLFC P+AGG S ++ RW   LP  +E+ P+ LPGR  R RE  + +L ++V  +  AI G+      D+P+ ++GH  GA++ FE+ RR++D E P  +ALIVS    P + +    +  L    P+   L           +R+   +P  +L++ +L+E+  P   AD    +T E+++G  L+CPI++ GG+ D   D   +  W  E ++G     MF G  FFL D
Sbjct:    2 DDVER---------DLWLSLRLPEPRARTRLFCLPFAGGGSQMYRRWRGRLPEAIEICPIQLPGREGRVRERPIEDLDELVASIAGAISGV-----LDLPFVLFGHSMGAMLGFEVARRLRDQELPTPRALIVSGRRAPHVPNPDPPIGDL----PDDGFLEE---------IRQLNGIPDGVLQSAELVELILPALRADYRMCETREHQAGAQLDCPIFAYGGLSDAKVDRPSLDAWR-EHTTGPFVIRMFQGDHFFLND 234          
BLAST of mRNA_Ecto-sp8_S_contig11243.1605.1 vs. uniprot
Match: A0A7Y8H511_9BACT (Thioesterase n=1 Tax=Ignavibacteriaceae bacterium TaxID=2651163 RepID=A0A7Y8H511_9BACT)

HSP 1 Score: 133 bits (335), Expect = 1.010e-33
Identity = 89/262 (33.97%), Postives = 142/262 (54.20%), Query Frame = 1
Query:  130 WVDLRHRVPKASARLFCCPWAGGNSLIFERWSEELP-GVEVVPLLLPGRLTRARENAVTNLSDIVTMVVEAICGLHLLTHEDIPYFIYGHDFGALVAFEICRRVQDEFPMKA--LIVSSMSCPQMVHEREKMTSLCQVSPEG-DILHAKNAEFESAMLRRGPPLPPELLENKDLMEIFTPLWFADLSAVDTYEYKSGTLLECPIYSLGGIKDGDQDMSK---WAMESSSGSSETTMFPGGSFFLLDRDNEVKILRLLRDLCT 894
            WV      P AS +LFC P+AGG+S +F RW E LP  VEV P+ LPGR  R  E+ + NLS++++ +  +I     L H + P+  +GH  GAL++FE+ R ++ +F ++   L VS+ S P +  ERE   +    S E  ++L + N             +P ELL N ++M+I  P+  AD +  +TY++ SG+ L C I ++GG +D   ++++   W+ E ++        PG  FFLL   +E  +L  +  L T
Sbjct:   11 WVLYPKPKPWASRKLFCFPYAGGSSFMFRRWPEFLPEDVEVCPVELPGRGRRISEDPIDNLSELISSLAGSI-----LPHLNKPFEFFGHSMGALISFELARYLKTKFDIEVSHLYVSAQSAPHL--EREPKVTYNLPSEEFIEVLRSLNG------------MPDELLSNTEMMQIMLPILRADFAICETYQFTSGSPLNCSITAIGGAEDDKVEIAELYAWS-ELTTNKFSMIQIPGDHFFLLK--SEQMLLSTMSGLLT 250          
BLAST of mRNA_Ecto-sp8_S_contig11243.1605.1 vs. uniprot
Match: A0A6B3M506_9CYAN (Thioesterase n=1 Tax=Symploca sp. SIO2E9 TaxID=2607812 RepID=A0A6B3M506_9CYAN)

HSP 1 Score: 132 bits (332), Expect = 2.790e-33
Identity = 81/244 (33.20%), Postives = 125/244 (51.23%), Query Frame = 1
Query:  130 WVDLRHRVPKASARLFCCPWAGGNSLIFERWSEELPG-VEVVPLLLPGRLTRARENAVTNLSDIVTMVVEAICGLHLLTHEDIPYFIYGHDFGALVAFEICRRVQDEFPMKA-LIVSSMSCPQMVHEREKMTSLCQVSPEGDILHAKNAEFESAMLRRGPPLPPELLENKDLMEIFTPLWFADLSAVDTYEYKSGTLLECPIYSLGGIKD--GDQDMSKWAMESSSGSSETTMFPGGSFFLLDR 849
            W+      P+A+ RLFC P+AGG + IF  W  ELP  VE+  + LPGR  R RE  ++N+  +   +VE       L   D P+ ++GH  GAL+ +E+ R++Q +    A L VS    P +        SL             +AEF   +    P +P E+L+ ++LM++F P+  AD++   TY +     L+CPI++LGG++D  G  D      E +  S    MFPGG F+L ++
Sbjct:   12 WIKCFQPNPQANLRLFCLPYAGGGASIFRLWHRELPSNVELCAIELPGRENRIREKPISNVEILTEKLVEVF-----LQDWDKPFALFGHSMGALIVYELARKLQHKNLSPAYLFVSGRQAPNVPELYPPFYSL------------PDAEFIETLTNIYPNIPDEVLKEEELMQLFLPVLRADMTLAQTYVHSQVEPLDCPIFALGGLEDKEGSYDRLVSWREYTRSSFSVQMFPGGHFYLNEK 238          
BLAST of mRNA_Ecto-sp8_S_contig11243.1605.1 vs. uniprot
Match: A0A364K7I7_9BACL (Putative thioesterase n=1 Tax=Thermoflavimicrobium daqui TaxID=2137476 RepID=A0A364K7I7_9BACL)

HSP 1 Score: 131 bits (330), Expect = 6.360e-33
Identity = 86/271 (31.73%), Postives = 136/271 (50.18%), Query Frame = 1
Query:  130 WVDLRHRVPKASARLFCCPWAGGNSLIFERWSEELPG-VEVVPLLLPGRLTRARENAVTNLSDIVTMVVEAICGLHLLTHEDIPYFIYGHDFGALVAFEICRRVQDEFPMKA--LIVSSMSCPQMVHEREKMTSLCQVSPEGDILHAKNAEFESAMLRRGPPLPPELLENKDLMEIFTPLWFADLSAVDTYEYKSGTLLECPIYSLGGIKDGDQDMS---KWAMESSSGSSETTMFPGGSFFLLDRDNEVKILRLLRDLCTN--EGKAVDD 918
            W+   HR+ +A   LFC P+AGGN +IF  W E+ P  + V+P+ LPGR  R  E + T+L  ++  + EA     +L +   P+  +GH  GALV++E+ R +Q  + ++   LIVS+   P +              P   I H  + EF   +      +P E+LENK+L+++F P    D    +TY ++ G LL  PI  LGG  D D  +     W  E +S + +  +F G  FF+  ++ EV  ++ L ++ T   E  A  D
Sbjct:    7 WLWTNHRIKEAKLHLFCFPYAGGNPVIFRSWQEKFPASIGVIPVCLPGRGMRMAEPSYTDLYQLIHDLAEA-----MLPYLTKPFMFFGHSMGALVSYELARYLQARYQVQPEHLIVSAFRAPHLP------------DPNPPIYHLPDEEFLHELSEMN-GMPKEILENKELLDLFLPTLRTDFQICETYTHRPGLLLNYPITVLGGKYDPDPSIEILRPWK-EHTSSTCKLQVFDGDHFFIHAKEEEV--IQFLCEMLTTWLESNASTD 256          
BLAST of mRNA_Ecto-sp8_S_contig11243.1605.1 vs. uniprot
Match: A0A2V8RTA5_9BACT (Putative thioesterase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8RTA5_9BACT)

HSP 1 Score: 131 bits (329), Expect = 7.130e-33
Identity = 85/243 (34.98%), Postives = 123/243 (50.62%), Query Frame = 1
Query:  130 WVDLRHRVPKASARLFCCPWAGGNSLIFERWSEELPG-VEVVPLLLPGRLTRARENAVTNLSDIVTMVVEAICGLHLLTHEDIPYFIYGHDFGALVAFEICRRVQDEFPMKA--LIVSSMSCPQMVHEREKMTSLCQVSPEGDILHAKNAEFESAMLRRGPPLPPELLENKDLMEIFTPLWFADLSAVDTYEYKSGTLLECPIYSLGGIKDGD---QDMSKWAMESSSGSSETTMFPGGSFFL 840
            W+ +    P+A  RLFC P+AGG +  +  W  ELP  VEV  + LPGR +R+RE+    L  +V  +  A+     L + D PY  +GH  GAL+AFE+ RR++ E       L VS    PQ+      +  L    PE + + A         LRR    P E+L + +LME+  PL  AD +AV TYEY     L CPI + GG++D +     +  W  +++ G +   M PG  F+L
Sbjct:    9 WLVINRPNPQARLRLFCFPYAGGGAATYHAWPGELPTEVEVCAVQLPGRASRSRESPYDRLKQLVEALAPAV-----LPYLDRPYAFFGHSMGALIAFELTRRLRREADTSPAHLFVSGRRAPQLPRTNPPIHDL----PEAEFVQA---------LRRLNGTPDEVLAHPELMELMLPLLRADFAAVGTYEYTPEPALACPITAYGGLQDHEVSRAQLEAWRTQTTGGFT-LRMLPGDHFYL 232          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11243.1605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRN7_9PHAE5.140e-11295.15Thioesterase domain-containing protein n=2 Tax=Ect... [more]
A0A097PUG7_9CYAN3.340e-3733.33Anatoxin-a synthetase A thioesterase type II n=4 T... [more]
UPI001685798F9.010e-3636.84Thioesterase n=4 Tax=unclassified Microcoleus TaxI... [more]
K9X7X8_9NOST1.030e-3534.12Putative thioesterase involved in non-ribosomal pe... [more]
C4NCB6_9CYAN2.850e-3533.85Thioesterase n=2 Tax=Microcoleaceae TaxID=1892252 ... [more]
A0A2D5ZBZ3_9BACT4.440e-3533.33Putative thioesterase n=1 Tax=Phycisphaeraceae bac... [more]
A0A7Y8H511_9BACT1.010e-3333.97Thioesterase n=1 Tax=Ignavibacteriaceae bacterium ... [more]
A0A6B3M506_9CYAN2.790e-3333.20Thioesterase n=1 Tax=Symploca sp. SIO2E9 TaxID=260... [more]
A0A364K7I7_9BACL6.360e-3331.73Putative thioesterase n=1 Tax=Thermoflavimicrobium... [more]
A0A2V8RTA5_9BACT7.130e-3334.98Putative thioesterase n=1 Tax=Acidobacteria bacter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11243contigEcto-sp8_S_contig11243:2978..6537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start0
Seed ortholog score142.5
Seed ortholog evalue3.3e-31
Seed eggNOG ortholog56107.Cylst_6218
Preferred namepteH
Model size936
KEGG rclassRC00014,RC00039
KEGG koko:K01071
KEGG ReactionR04014,R08157,R08158
KEGG Pathwayko00061,ko01100,map00061,map01100
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.thioesterase involved in non-ribosomal peptide biosynthesis
EggNOG OGs1G16V@1117,1HIUI@1161,COG3208@1,COG3208@2
EC3.1.2.21
Cds size936
COG Functional cat.Q
Best tax levelNostocales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11243.1605.1prot_Ecto-sp8_S_contig11243.1605.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11243 2978..6537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143203.6868157-CDS-Ecto-sp8_S_contig11243:2977..30551681143203.6868157-CDS-Ecto-sp8_S_contig11243:2977..3055Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11243 2978..3055 -
1681143203.6978843-CDS-Ecto-sp8_S_contig11243:3468..36491681143203.6978843-CDS-Ecto-sp8_S_contig11243:3468..3649Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11243 3469..3649 -
1681143203.705778-CDS-Ecto-sp8_S_contig11243:3821..39251681143203.705778-CDS-Ecto-sp8_S_contig11243:3821..3925Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11243 3822..3925 -
1681143203.7145765-CDS-Ecto-sp8_S_contig11243:4365..44461681143203.7145765-CDS-Ecto-sp8_S_contig11243:4365..4446Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11243 4366..4446 -
1681143203.723815-CDS-Ecto-sp8_S_contig11243:4770..49841681143203.723815-CDS-Ecto-sp8_S_contig11243:4770..4984Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11243 4771..4984 -
1681143203.7315152-CDS-Ecto-sp8_S_contig11243:5400..55971681143203.7315152-CDS-Ecto-sp8_S_contig11243:5400..5597Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11243 5401..5597 -
1681143203.7395532-CDS-Ecto-sp8_S_contig11243:6456..65371681143203.7395532-CDS-Ecto-sp8_S_contig11243:6456..6537Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11243 6457..6537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11243.1605.1

>prot_Ecto-sp8_S_contig11243.1605.1 ID=prot_Ecto-sp8_S_contig11243.1605.1|Name=mRNA_Ecto-sp8_S_contig11243.1605.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=312bp
RNFYANFTERALAKCGDYSGEKNIIEQDDVDRVEHEHILAWRAWVDLRHR
VPKASARLFCCPWAGGNSLIFERWSEELPGVEVVPLLLPGRLTRARENAV
TNLSDIVTMVVEAICGLHLLTHEDIPYFIYGHDFGALVAFEICRRVQDEF
PMKALIVSSMSCPQMVHEREKMTSLCQVSPEGDILHAKNAEFESAMLRRG
PPLPPELLENKDLMEIFTPLWFADLSAVDTYEYKSGTLLECPIYSLGGIK
DGDQDMSKWAMESSSGSSETTMFPGGSFFLLDRDNEVKILRLLRDLCTNE
GKAVDDPRTTW*
back to top

mRNA from alignment at Ecto-sp8_S_contig11243:2978..6537-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11243.1605.1 ID=mRNA_Ecto-sp8_S_contig11243.1605.1|Name=mRNA_Ecto-sp8_S_contig11243.1605.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3560bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11243:2978..6537- (Ectocarpus species8 EcLAC_412)
AGGAATTTCTACGCTAACTTCACTGAACGAGCACTCGCGAAATGTGGAGA CTACAGCGGAGAGAAGAACATCATCGAGCAGGTTGGACATTATACATTTA TCAAATACAGAGCACCAAACAAAGCGCTTTGAGCCTTCTATTATACCCTA CACTGAGATGGCAAGAAGAAGTACCCTGTCTCTGTTATTTGAGTTGGTAC TTTCGCAGGTGTTCGAGCACTGGCGCGGAGGTGCGATCGCTTTCTACCGA TCGCTTTCTAGTAATGCTGTTGCGGTAATATTACGCACACACCCATGCGT AACTCCGTACCATGCGATGGTGAATACTGTGACAAGATGTGCCTGAGACC AATTCTAGCAGCTTGGCTGTCGACGTACTGTAGCAGCTTAGTTGCCTGAT CGTGTGACATGCAGCTACATAGCTCGTGGTGAAAGGCGAAGTACACTACG AGTTTGGTCTTGACAGTGTGCAAAAGTTCAACACCGCGGGTACCTTCCAG CCTACGTCCCCTTGGTGATGAAGTAAGTCCCTTCGTTCCTTCGTCCGTTT CATCGTGCGCAGCGAGCACGTCGTACCTCTCGGCACATGTTTTGTGTGCC TGGTTGAGAGGATACCGCTTGCCCTCTCAATGAACGCAACTTTCACTGGT AGGCGCACACCAGCACCGCGCCTGCATTGAGATCGAGAACCCCGGCCCTA AATCCCAACCTAGTGGTGTCCACAAAAGGTAGAAACTGGCGTCAGCAATG GCACGCACAAGACCTTGCAGTCGGGACACACTCGCAGAGGCAAATGGGGG CAAACTGTCGTCCATTCTCAAAGAGAGTATGAAACGCGCTTGGCAGGTCG AAATGAGGTTCTGCTGGTGCACACCATGCTGTCTAAATCACATCAAACCA GCGTCTTGCGCTTGCTACTTGTTACCATGCGAACTCCCAGGATGATGTGG ACCGGGTCGAGCACGAGCATATTCTCGCATGGCGTGCGTGGGTTGATCTG CGACACCGCGTGCCCAAGGCATCAGCGCGTTTGTTCTGCTGTCCGTGGGC TGGAGGAAACAGCCTCATATTTGAACGCTGGTCAGAAGAACTGCCTGGAG TGGAAGTTGTGCCCCTTCTACTGCCGGGAAGACTCACGTAAGTACTCGGT CTTACTGGCTGGTCTTGGCGGCCAGTGATGGGCACACGTTTCCAAGGACG CGCTCCTATCACGAAATGCAGGAGTTCAGGAATGCAAAAGTCATGGTGAA CTGATTGTTCCCGCAATGTGGGAAAAACGAGGAGTTAATGTGGTCTGTGT TTGGTGACCACAACATGAGACAAAATGAGCCCAGCCATTGACGCCACCCT ATTCCTCTCAGAAGAAGCTGTAGCTCGACACCAGAGACGGAAACAGAACG CGTGACGGGGCTGGCACAGGGAATCCTAAGCAGTCGCATTCATTGTACAA CAACATCCGACCGACATTCGTAAAACATACGTGGCTCAGTGATGAACAGG GATGCTTGTTTGCTCTTGGTTGTTGCTGTTGCTGCTGCTATCGTTCCACC AAGACGTGCGAGAGAGAATGCCGTGACAAACTTGTCGGATATCGTGACGA TGGTGGTTGAGGCAATCTGCGGGCTTCATCTTCTAACACACGAGGACATC CCGTATTTTATATATGGGCACGACTTCGGAGCACTTGTGGCGTTCGAGAT ATGTCGGAGGGTGCAAGACGAGTTCCCCATGAAAGCCCTCATCGTATCAA GCATGAGCTGCCCTCAGGTGGATGACCTTAATATATGACATAATCCCTTT TGTTGGACATTTTATCGCAGCGGTTTAGTACAGGCGACGCGTACGCATTT TGTGGAAGCACCAAAGCAAACCCTGTCGAAGAAGAGTAGTAACGAAGTAG AGAGGACTCTGAGTGGGGCCACAAAAGGACACAAGAACACCAAAACGATC TTGGTCAGCCTTTTCCAAGTTCCATAAGACTACAGGCTAGGCTACGCTCG AAAGTGTGGTGAAACGTTCTCTTGGCGCGAAAAAAATTGCGTTGAACTGC TCCCGACACTCTCTCCCATTTCCTCCTAAATGAAAGTGCAGATGGTACAC GAACGAGAGAAAATGACGTCGCTGTGCCAAGTTTCTCCGGAGGGCGATAT TCTGCACGCAAAAAATGCCGAGGTAAGTCCGTCTACAATGATGTACATAT GAGGTAATGGAGTACCGTTCTCCCTGGGGAATATTCAAGTTGGCGTTACT GCAGCGCCATTGAGGGTGCAACTTACGAGACGATATTTGCCCAACACCAA CACGTTTGTGCTACATCTCGTTGGAATCGGCGCTGAGAATGAGGCCCGTA CTATGTAACAAACCTTACGTTTTGCACTTGAGGCACCGTAGACTGGTATG TATGTCTGTGTGCCTCTAATCGACAACACGAGCAAGTGCTTGACCTCGAA ACTTGACATAGGCAGTCCCACATCTCAAGAGATACACGCCTCGTTTTGTG TTACCCGTAGCATACCCATTATTTTTCTTACTATGTTACGACCTTCACAG CGTGGTGGCAAGTGGGCAAACGTCTTCGTATGTACCTGATACACGTTTGT TGGATCGGACAGTTTGAGAGTGCGATGCTTCGGAGAGGACCGCCGTTGCC GCCGGAACTGCTCGAGAATAAAGATTTGATGGAGATATTCACGCCTCTGT GGTTTGCAGACTTGAGGTGAGCGACGCGCACGCAACGAGGTATTGTTATC GCTGTCCCAGCTGTTTTTGGTGTCTCGTGCATGCAACGACCCAGGTGTTT TGTGATCCCCTGCAATACATGGGAACATGGCACTCAAGTCCGTTTCTTCA CCAACCCCCCCAAAACCCTCTCTTTCGACCCCACTTAGCGCTGTGGACAC GTATGAATACAAGAGCGGCACGCTGCTTGAGTGCCCCATATACAGCCTGG GAGGTATCAAGGACGGGGATCAGGACATGAGTAAGTGGGCCATGGAATCG TCCTCGGGCTCAAGTGAGACCACCATGTTTCCAGGGGGCTCTTTCTTCTT GCTGGACCGGGATAACGAGGTCGGCGCAGTTGAAACTGGGCTCATGTTTC CGTGTTATTTGGAAAAAGATGGTGGTCCTGGGTTGAGGTGCAGTGTTGGC AGGGTCCTCCGTCGGGAACAATTACAAAAATCAAATCGTCGGTCGCTTAA CAACCCCTGTACTTGTGTGTACGTTGAGCAGCATTTCACAGACCCGCGTA CGATAAAAACTGTTTCCGAGCAACTTGATATGGACGGACACAGTGCCCCT AAATCCGTTTCAGAGAAACCCAGACATGGGCAATATGGTATTTGCAAGTG GCGAAACGGTCTTGACCGGACCGGTCGCTGCGGCAGCTATCCGCCCACGA AACTTGCTCAAACTCGGCATTCAACGGCAACTGTTGCATCCTATAACCTG ACTCTTTACGTTTCGGTCGTACATTCGTACAGGTCAAAATTCTGCGGCTC CTGAGAGATCTCTGCACAAATGAAGGCAAGGCCGTCGACGACCCGAGAAC CACGTGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11243:2978..6537-

>mRNA_Ecto-sp8_S_contig11243.1605.1 ID=mRNA_Ecto-sp8_S_contig11243.1605.1|Name=mRNA_Ecto-sp8_S_contig11243.1605.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=936bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11243:2978..6537- (Ectocarpus species8 EcLAC_412)
AGGAATTTCTACGCTAACTTCACTGAACGAGCACTCGCGAAATGTGGAGA
CTACAGCGGAGAGAAGAACATCATCGAGCAGGATGATGTGGACCGGGTCG
AGCACGAGCATATTCTCGCATGGCGTGCGTGGGTTGATCTGCGACACCGC
GTGCCCAAGGCATCAGCGCGTTTGTTCTGCTGTCCGTGGGCTGGAGGAAA
CAGCCTCATATTTGAACGCTGGTCAGAAGAACTGCCTGGAGTGGAAGTTG
TGCCCCTTCTACTGCCGGGAAGACTCACACGTGCGAGAGAGAATGCCGTG
ACAAACTTGTCGGATATCGTGACGATGGTGGTTGAGGCAATCTGCGGGCT
TCATCTTCTAACACACGAGGACATCCCGTATTTTATATATGGGCACGACT
TCGGAGCACTTGTGGCGTTCGAGATATGTCGGAGGGTGCAAGACGAGTTC
CCCATGAAAGCCCTCATCGTATCAAGCATGAGCTGCCCTCAGATGGTACA
CGAACGAGAGAAAATGACGTCGCTGTGCCAAGTTTCTCCGGAGGGCGATA
TTCTGCACGCAAAAAATGCCGAGTTTGAGAGTGCGATGCTTCGGAGAGGA
CCGCCGTTGCCGCCGGAACTGCTCGAGAATAAAGATTTGATGGAGATATT
CACGCCTCTGTGGTTTGCAGACTTGAGCGCTGTGGACACGTATGAATACA
AGAGCGGCACGCTGCTTGAGTGCCCCATATACAGCCTGGGAGGTATCAAG
GACGGGGATCAGGACATGAGTAAGTGGGCCATGGAATCGTCCTCGGGCTC
AAGTGAGACCACCATGTTTCCAGGGGGCTCTTTCTTCTTGCTGGACCGGG
ATAACGAGGTCAAAATTCTGCGGCTCCTGAGAGATCTCTGCACAAATGAA
GGCAAGGCCGTCGACGACCCGAGAACCACGTGGTGA
back to top