mRNA_Ecto-sp8_S_contig11220.1579.1 (mRNA) Ectocarpus species8 EcLAC_412
|
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig11220.1579.1 vs. uniprot
Match: D7G9C0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C0_ECTSI) HSP 1 Score: 476 bits (1225), Expect = 1.090e-167 Identity = 282/303 (93.07%), Postives = 285/303 (94.06%), Query Frame = 1
Query: 1 MVRTAGVVAGATLVGLLDVASVAGEDFQVVTPSEGMTVISSRKYTVEWTNNFANSFVEIDLYYCGSSCKEGECGQWITSLCPYGGAGCHDNEGDYDVVMPEPMAGTSGGAYKGLTVISPETGDLAYVGQEYTVQFDYFSEVGSRVGRFNIELYEDNALGGCNGEFVSTLCDKPDIGCKDSQGDYDIIMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDDGDSEDXXXXXXXXIAFSFDFSDLTDDIQDSFLDTADDVEFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDYSYRF 909
MVRTAGVVAGA LVGLLDVASVAGE+FQV+ PSEGMTVISSR YTVEWTNN NSFVEIDL YCGSSCKEGECGQWITSLCPYG GCHD EGDYDVVMPEPMAGTSGGAYKGLT ISPETGDLAYVGQEYTVQFDYFSEV SRVGRFNIELYEDN LGGCNGEFVSTLCDKPDIGCKDSQGDYDIIMADVPTGE KI ISRFEDTATYGCSG+FFVVSDDGDSEDXXXXXXXXIAFSFDFSDLTDDIQDSFLDTADDVEFD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDYSYRF
Sbjct: 1 MVRTAGVVAGAALVGLLDVASVAGEEFQVIAPSEGMTVISSRTYTVEWTNNVPNSFVEIDLCYCGSSCKEGECGQWITSLCPYGEDGCHDIEGDYDVVMPEPMAGTSGGAYKGLTFISPETGDLAYVGQEYTVQFDYFSEVDSRVGRFNIELYEDNGLGGCNGEFVSTLCDKPDIGCKDSQGDYDIIMADVPTGECKIHISRFEDTATYGCSGIFFVVSDDGDSEDXXXXXXXXIAFSFDFSDLTDDIQDSFLDTADDVEFDDRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDYSYRF 303
BLAST of mRNA_Ecto-sp8_S_contig11220.1579.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 227 bits (579), Expect = 4.640e-70 Identity = 119/240 (49.58%), Postives = 143/240 (59.58%), Query Frame = 1
Query: 67 AGEDFQVVTPSEGMTVISSRKYTVEWTNNFANSFVEIDLYYCGSSCKEGECGQWITSLCPYGGAGCHDNEGDYDVVMPEPMAGTSGGAYKG-----------------------------------LTVISPETGDLAYVGQEYTVQFDYFSEVGSRVGRFNIELYEDNALGGCNGEFVSTLCDKPDIGCKDSQGDYDI-IMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDDGDSED 678
A +VVTP+EG V++SR YTVEWT +N+ EIDLYYCGS C E ECG W+T+LCPYG GC DNEGDYD+VMPEPM+GTSG YK +TV SP +GD A G+EYTV+FDY + +GS VGRF I+LY G C G F+ TLCDKP IGCKDS GDYD+ I D G Y IR+ FED + YGCS F ++ D +D
Sbjct: 4 AASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDC-GTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDD 242
BLAST of mRNA_Ecto-sp8_S_contig11220.1579.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 226 bits (577), Expect = 7.240e-70 Identity = 126/255 (49.41%), Postives = 154/255 (60.39%), Query Frame = 1
Query: 67 AGEDFQVVTPSEGMTVISSRKYTVEWTNNFANSFVEIDLYYCGSSCKEGECGQWITSLCPYGGAGCHDNEGDYDVVMPEPMAGTSGGAYK-----------------------------------GLTVISPETGDLAYVGQEYTVQFDYFSEVGSRVGRFNIELYEDNALGGCNGEFVSTLCDKPDIGCKDSQGDYDI-IMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDDGDSEDXXXXXXXXIAFSFDF 723
A +V TPS+G+TVI+ R YTVEWT +++ EIDLYYCGS C E +CG W+T+LCPYG GC DNEGDYD+VMPEPM GTSG YK L V SP +GDLA EYTV+FDY + VGS V RF I+LY + G C G +V ++CDKP IGCKDS GDYD+ I D GEYKIR++RFED + Y CSG F + ++GD DXXXXX + S+ F
Sbjct: 16 AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDC-GTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI--EEGDDSDXXXXXEDAFSLSYRF 267
BLAST of mRNA_Ecto-sp8_S_contig11220.1579.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 225 bits (574), Expect = 1.550e-69 Identity = 128/260 (49.23%), Postives = 151/260 (58.08%), Query Frame = 1
Query: 1 MVRTAGVVAGATLVGLLDVASVAGEDFQVVTPSEGMTVISSRKYTVEWTNNFANSFVEIDLYYCGSSCKEGECGQWITSLCPYGGAGCHDNEGDYDVVMPEPMAGTSGGAYKG-----------------------------------LTVISPETGDLAYVGQEYTVQFDYFSEVGSRVGRFNIELYEDNALGGCNGEFVSTLCDKPDIGCKDSQGDYDI-IMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDDGDS 672
MVRT V A G+L VAS +VVTP+ G V+SSR YTVEW+ +N EIDLYYC S C E ECG+W+T+LCPYG GC DNEGDYD+VMPEPM+GTSG YK +TV SP TGD A G+EYTV+FDY + +GS VGRF I+LY G C G F+ TLCDKP IGCKDS GDYD+ I D G Y IR+ FED + YGCS F ++ D S
Sbjct: 2 MVRTGFV---ALACGMLGVASA----LEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDC-GTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSS 253
BLAST of mRNA_Ecto-sp8_S_contig11220.1579.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 221 bits (564), Expect = 4.680e-68 Identity = 116/238 (48.74%), Postives = 143/238 (60.08%), Query Frame = 1
Query: 67 AGEDFQVVTPSEGMTVISSRKYTVEWTNNFANSFVEIDLYYCGSSCKEGECGQWITSLCPYGGAGCHDNEGDYDVVMPEPMAGTSGGAYKG-----------------------------------LTVISPETGDLAYVGQEYTVQFDYFSEVGSRVGRFNIELYEDNALGGCNGEFVSTLCDKPDIGCKDSQGDYDI-IMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDDGDS 672
A +VVTPS + V++ R YTVEWT + F EIDLY+CGS C E CG W+T+LCPYG GC DNEGDYD+VMPEPM+G S YK LTV SP GD A G+EYTV+FDY + VGS+V RF+I+LY + G C G +V+++CDKP IGCKDS GDYD+ I AD G+YKIR+ RFED YGCSG F ++ D +S
Sbjct: 16 AANALEVVTPSADLIVVADRTYTVEWTGADSGRF-EIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDC-GTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDES 251
BLAST of mRNA_Ecto-sp8_S_contig11220.1579.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 201 bits (511), Expect = 4.210e-60 Identity = 109/233 (46.78%), Postives = 134/233 (57.51%), Query Frame = 1
Query: 67 AGEDFQVVTPSEGMTVISSRKYTVEWTNNFANSFVEIDLYYCGSSCKEGECGQWITSLCPYGGAGCHDNEGDYDVVMPEPMAGTSGGAYK----------------------------------GLTVISPETGDLAYVGQEYTVQFDYFSEVGSRVGRFNIELYEDNALGGCNGEFVSTLCDKPDIGCKDSQGDYDI-IMADVPTGEYKIRISRFEDTATYGCSGVFFVVSD 660
A +VV+P+ G++VI+ R YTVEWT + F EIDLYYCGS C E ECG W+T+LCPYG GC D +GDYD+VMPEPMAGTS G YK LTV SP GD A G YTV++DY + +GS RF I+LY G G +V+TLCDKP IGC DSQGDYD+ I +D P G Y +R+ F D + CS F +V+D
Sbjct: 16 AANALEVVSPAAGISVIADRTYTVEWTGTSDSRF-EIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTSSG-YKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVND 246
BLAST of mRNA_Ecto-sp8_S_contig11220.1579.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 200 bits (508), Expect = 1.120e-59 Identity = 107/231 (46.32%), Postives = 134/231 (58.01%), Query Frame = 1
Query: 67 AGEDFQVVTPSEGMTVISSRKYTVEWTNNFANSFVEIDLYYCGSSCKEGECGQWITSLCPYGGAGCHDNEGDYDVVMPEPMAGTSGGAYKGL----------------------------------TVISPETGDLAYVGQEYTVQFDYFSEVGSRVGRFNIELYEDNALGGCNGEFVSTLCDKPDIGCKDSQGDYDIIM-ADVPTGEYKIRISRFEDTATYGCSGVFFVV 654
A +VV+P+ G V++ YTVEWT + + +IDLYYCGS C E ECG W+T+LCPYG GC D +GDYDVVMPEPM GTS G YK + +V SP GD A G EYTV+FDY + +GS V RF I+LY G C G +V+T+CDKP IGCKDSQGDYD+++ + +G Y IR+ FED YGCS F +V
Sbjct: 16 AANALEVVSPAAGDMVVADSAYTVEWTGATSGRY-DIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSG-YKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDC-GTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243
BLAST of mRNA_Ecto-sp8_S_contig11220.1579.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 193 bits (490), Expect = 6.030e-57 Identity = 104/234 (44.44%), Postives = 131/234 (55.98%), Query Frame = 1
Query: 67 AGEDFQVVTPSEGMTVISSRKYTVEWTNNFANSFVEIDLYYCGSSCKEGECGQWITSLCPYGGAGCHDNEGDYDVVMPEPMAGTSGGAYK----------------------------------GLTVISPETGDLAYVGQEYTVQFDYFSEVGSRVGRFNIELYEDNALGGCNGEFVSTLCDKPDIGCKDSQGDYDI-IMADVPTGEYKIRISRFEDTATYGCSGVFFVVSDD 663
A +VV+P G++V++ R YTVEWT F EIDLYYC S C + CG W+T+LCPYG GC D+ GDYD++MPEPM+GTS G YK LTV SP GD A G+ YTV++DY + GS RF ++LY G C G +V+TLCD+P IGC DSQGDYD+ I +D P G Y IR+ F+D Y CS F V + D
Sbjct: 16 AANALEVVSPDGGISVLADRAYTVEWTGTTTGRF-EIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSG-YKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDC-GTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246
BLAST of mRNA_Ecto-sp8_S_contig11220.1579.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 183 bits (465), Expect = 2.450e-53 Identity = 96/193 (49.74%), Postives = 116/193 (60.10%), Query Frame = 1
Query: 67 AGEDFQVVTPSEGMTVISSRKYTVEWTNNFANSFVEIDLYYCGSSCKEGECGQWITSLCPYGGAGCHDNEGDYDVVMPEPMAGTSGGAYK-----------------------------------GLTVISPETGDLAYVGQEYTVQFDYFSEVGSRVGRFNIELYEDNALGGCNGEFVSTLCDKPDIGCKDS 540
A +V TPS+G+TVI+ R YTVEWT +++ EIDLYYCGS C E +CG W+T+LCPYG GC DNEGDYD+VMPEPM+GTSG YK L V SP +GDLA EYTV+FDY + VGSRV RF I+LY + G C G +V ++CDKP IGCKDS
Sbjct: 17 AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDC-GTYVQSICDKPTIGCKDS 208
BLAST of mRNA_Ecto-sp8_S_contig11220.1579.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 174 bits (440), Expect = 1.830e-49 Identity = 94/227 (41.41%), Postives = 128/227 (56.39%), Query Frame = 1
Query: 82 QVVTPSEGMTVISSRKYTVEWTNNFANSFVEIDLYYCGSSCKEGECGQWITSLCPYGGAGCHDNEGDYDVVMPEPMAGTSGGAYKGLTVISPETGDLAYVGQEYTV-----------------------------------QFDYFSEVGSRVGRFNIELYEDNALGGCNGEFVSTLCDKPDIGCKDSQGDYDIIM-ADVPTGEYKIRISRFEDTATYGCSGVFFVV 654
+V +P+ G ++++ TVEWT + F +IDLYYCGS C E ECG W+T+LCPYG GC D +GDYDVVMPEPM GTS G YK + S + D+ G E+T+ FD+ + GS V RF+I+LY G C G +V+++CDK IGCKDSQGDYD+++ +D +G Y IR+ FED +GCS F ++
Sbjct: 21 EVTSPAAGDMIVAASSTTVEWTGTSSGRF-DIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSG-YKVMVTDSSDESDMGCSG-EFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDC-GTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEII 243 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11220.1579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig11220.1579.1 >prot_Ecto-sp8_S_contig11220.1579.1 ID=prot_Ecto-sp8_S_contig11220.1579.1|Name=mRNA_Ecto-sp8_S_contig11220.1579.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=304bp MVRTAGVVAGATLVGLLDVASVAGEDFQVVTPSEGMTVISSRKYTVEWTNback to top mRNA from alignment at Ecto-sp8_S_contig11220:1307..4928+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig11220.1579.1 ID=mRNA_Ecto-sp8_S_contig11220.1579.1|Name=mRNA_Ecto-sp8_S_contig11220.1579.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3622bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11220:1307..4928+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11220:1307..4928+ >mRNA_Ecto-sp8_S_contig11220.1579.1 ID=mRNA_Ecto-sp8_S_contig11220.1579.1|Name=mRNA_Ecto-sp8_S_contig11220.1579.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11220:1307..4928+ (Ectocarpus species8 EcLAC_412)back to top |