mRNA_Ecto-sp8_S_contig11214.1573.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11214.1573.1
Unique NamemRNA_Ecto-sp8_S_contig11214.1573.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig11214.1573.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 1.140e-65
Identity = 208/405 (51.36%), Postives = 251/405 (61.98%), Query Frame = 1
Query:   67 GPDQNSCVKVFIIAFNEMWGETWDAKGWYTSTKELQLASLEFCKVCRTYQTLHLNVEARTPRRLLAATDAPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIFAMTDSDRLVFGRGFEGNLEAVAWPRRLKTIDMRY-SNFNKPLERMRFPASLETIVLSEVXXXXXXXXXXXXXXXXXXFSEGSSFNQPITGGFLXXXLQEIALXXXXXXXXXDMVWXXXXLKLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITFAS---CEDYGDNAVTVYADXXXXXXXXXXXXXXXXXTLGEHFRQSLQGLGTWIPNLEALRLLDHKDGSGTEES-LLRGIEWPMVLRHLAVIKGSNLDGVTIPSVVQVDF 1266
            GP +  C++  I+A NE    T D K WYTSTKELQLASL+FC  CR  QT+HLNV+ + PRRLLA+ DAPP HPKR C TR+PRLR+R VTWNMPTA +LR PIFAMTD + L FG  F  +LEAV WP  L+T++  + S F++ +E +++P  L+ +                          G  FNQPI        LQ++        XXX    XXXX    XXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        C+++  N + ++A+                  LG  FRQSLQGLGTW+PNLE L LL H  GSG  +S  LR IEWP  LRHL +++G+++DGV IP  VQV F
Sbjct:   45 GPTRKFCLEALIVALNE----TCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTF------------------------GGDFNQPIERVKFPASLQQLIFRTSSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGNRLNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWCDEFAGNGMVIFANFDQPIGSSVGPALLRRLVLGHMFRQSLQGLGTWMPNLEVLHLL-HYHGSGLGDSNFLREIEWPKGLRHLTLLEGTSIDGVDIPLAVQVLF 420          
BLAST of mRNA_Ecto-sp8_S_contig11214.1573.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 1.490e-65
Identity = 210/398 (52.76%), Postives = 242/398 (60.80%), Query Frame = 1
Query:   67 GPDQNSCVKVFIIAFNEMWGETWDAKGWYTSTKELQLASLEFCKVCRTYQTLHLNVEARTPRRLLAATDAPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIFAMTDSDRLVFGRGFEGNLEAVAWPRRLKTIDMRYSNFNKPLERMRFPASLETIVLSEVXXXXXXXXXXXXXXXXXXFSEGSSFNQPITGGFLXXXLQEIALXXXXXXXXXDMVWXXXXLKLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITFASCEDY-GDNAVTVYADXXXXXXXXXXXXXXXXXTLGEHFRQSLQGLGTWIPNLEALRLLDHKDGSGTEESLLRGIEWPMVLRHLAVIKGSNLDGVTIPSVVQ 1257
            GP ++SC+   I+A NE    T D K WYTSTKE QLASLEFC  CR +QTL L V++RTPRRLLAA DAPP HPKR CGTR+PRLRAR VTW++PTA  LRN I++M D+D L F R FE +LEAVAWPRRLKT+                    E   ++EV                  F + S F+QPI G                      +VW     +L       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  + F   ++  GD  VT  +    X             TLG++FRQSLQ LGTW+PNLE   LL H   SGTE+S LRGIEWP  LR LAV + S+L GV IPS V+
Sbjct:    6 GPARDSCLNAIIVALNE----TSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTV--------------------EVSGIAEVAK----------------FHDKSLFDQPIAG----------------------VVWPDTLEQLTFGLFLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVCFGVRQEVLGDVVVT--SKFNRXIGASAWPKAMHRLTLGQNFRQSLQELGTWMPNLETFHLLHHIHDSGTEDSFLRGIEWPKGLRQLAVCRLSSLAGVVIPSTVE 339          
BLAST of mRNA_Ecto-sp8_S_contig11214.1573.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 7.340e-60
Identity = 249/401 (62.09%), Postives = 274/401 (68.33%), Query Frame = 1
Query:  136 DAKGWYTSTKELQLASLEFCKVCRTYQTLHLNVEARTPRRLLAATDAPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIFAMTDSDRLVFGRGFEGNLEAVAWPRRLKTIDMRYSN-FNKPLERMRFPASLETIVLSEVXXXXXXXXXXXXXXXXXXFSEGSSFNQPITGGFLXXXLQEI----------------------ALXXXXXXXXXDMVWXXXXLKLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITFASCEDYGDNAVTVYADXXXXXXXXXXXXXXXXXTLGEHFRQSLQGLGTWIPNLEALRLLDHKDGSGTEESLLRGIEWPMVLRHLAVIKGSNLDGVTIPSVVQVDFL 1269
            D K WYTSTKELQ ASLEFC  CR YQTL L V+ +TPR LLAA DAP  H KRPC TR+PRLRAR V WNMPTA EL++PIFA+ D  RL FG  FEG+LE+VAWP+RLK ID  + + FN+P+E + FP SL  + LS+ XXXXXXXXXXXXXXXXXX                XXX                               XXXXXX    XXXX    X    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      E  G +   ++++ XXXXXXXXXXXXXXX TLG  FRQSLQGLGTWIPNLE    LDH +GSG E+SLLRGIEWP  LR LAV + S LDGV IPS V+V  L
Sbjct:    3 DGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFSWGSLFNQPIEGVEFPPSLLELRLSDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYRSRXXXXXXXXXXXXXXXXXXXGEAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHESQGFDHAIMFSEFXXXXXXXXXXXXXXXLTLGHKFRQSLQGLGTWIPNLEIFHFLDHSNGSGDEDSLLRGIEWPTGLRQLAVFRDSRLDGVIIPSTVEVSRL 403          
BLAST of mRNA_Ecto-sp8_S_contig11214.1573.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 7.680e-53
Identity = 97/162 (59.88%), Postives = 115/162 (70.99%), Query Frame = 1
Query:   67 GPDQNSCVKVFIIAFNEMWGETWDAKGWYTSTKELQLASLEFCKVCRTYQTLHLNVEARTPRRLLAATDAPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIFAMTDSDRLVFGRGFEGNLEAVAWPRRLKTIDMRYSN-FNKPLERMRFPASLETIVL 549
            G   N C+   I+A NE    T D   WYTSTKELQ ASLEFC  CR Y  +HL V+ + PR LLAA DAPP HPKR C TR+PRLRARSVTWNM  A EL NPIFA+TD D L FG  F+G+LEAV WPRRLK I+  Y++ FN+PLE +++P SL+ +VL
Sbjct:    8 GLTHNPCLSSLIVALNE----TCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPLELIKWPESLQHLVL 165          
BLAST of mRNA_Ecto-sp8_S_contig11214.1573.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 4.320e-51
Identity = 99/168 (58.93%), Postives = 119/168 (70.83%), Query Frame = 1
Query:   49 SGSAGVGPDQNSCVKVFIIAFNEMWGETWDAKGWYTSTKELQLASLEFCKVCRTYQTLHLNVEARTPRRLLAATDAPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIFAMTDSDRLVFGRGFEGNLEAVAWPRRLKTIDMRYSN-FNKPLERMRFPASLETIVL 549
            S S  +GP ++SC+K   +A NE    T D K WYTSTKELQLASLE C  CR YQTLHL V+A TPRRLLAA DAP  HPKR CGTR+PRLRAR  TWN+PTA  +R  IFA  D D L FG+ F G+L+A+ WPRRLKTI+ R S+  N+ L+ + +PASL  + L
Sbjct:  124 SPSCTLGPTRSSCLKTLTVALNE----TCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPASLRKVCL 287          
BLAST of mRNA_Ecto-sp8_S_contig11214.1573.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 2.740e-50
Identity = 97/160 (60.62%), Postives = 115/160 (71.88%), Query Frame = 1
Query:   67 GPDQNSCVKVFIIAFNEMWGETWDAKGWYTSTKELQLASLEFCKVCRTYQTLHLNVEARTPRRLLAATDAPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIFAMTDSDRLVFGRGFEGNLEAVAWPRRLKTIDMR-YSNFNKPLERMRFPASLETI 543
            GP  N+C+    +A     GET D K WYTSTKELQLASLEFC  CR YQTLHL V+ R PR LLAA D PP HPKR    R+PRLRAR VTWNMPTA ELR+PIFA+ D D L FG  FEG+LEAV WPRRL++I    +S FN P++ +++PASL+ +
Sbjct:   30 GPTSNTCLNAIYVAL----GETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAFHNFSPFNTPIDLVKWPASLKRL 185          
BLAST of mRNA_Ecto-sp8_S_contig11214.1573.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 6.410e-50
Identity = 229/394 (58.12%), Postives = 252/394 (63.96%), Query Frame = 1
Query:   91 KVFIIAFNEMWGETWDAKGWYTSTKELQLASLEFCKVCRTYQTLHLNVEARTPRRLLAATDAPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIFAMTDSDRLVFGRGFEGNLEAVAWPRRLKTIDMRYSNFNKPLERMRFPASLETIVLSE--------VXXXXXXXXXXXXXXXXXXFSEGSSFNQPITGGFLXXXLQEIALXXXXXXXXXDMVWXXXXLKLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITFASCEDYG-DNAVTVYADXXXXXXXXXXXXXXXXXTLGEHFRQSLQGLGTWIPNLEALRLLDHKDGSGTEESLLRGIEWPMVLRHLAVIKGSNLDGVTIP 1245
            K  I+A NEM     D K WYTSTKELQLASLEFC  CR YQ L L V+A+TPR LLAA DAPP H KRPC TR+PRLRAR V WNMPTA ELR  +FA+ D + L FG  F G+LEAV WP  LK I    S FN+        ASL+ + L           XXXXXXXXXXXXXXXXXX                XXX      XXXX     D+  XXXX    XXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +  G +NAV + A                  TLG  F++SLQGLGT +PNLEA  LLDH++GSG+E+SL RGIEWP VLRHL V   S+LDGV IP
Sbjct:   19 KDLILALNEMC----DGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIFFSSEFNQXXXXXXXXASLQKLDLENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLKEDVEXXXXXXXXXXXXXXXXXXEWATFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMHDGEGFENAVMLSA-FNQRVDMCEWPVSMRRLTLGHKFKESLQGLGTRMPNLEAFHLLDHRNGSGSEDSL-RGIEWPKVLRHLVVFSNSSLDGVVIP 406          
BLAST of mRNA_Ecto-sp8_S_contig11214.1573.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.090e-43
Identity = 137/399 (34.34%), Postives = 162/399 (40.60%), Query Frame = 1
Query:   67 GPDQNSCVKVFIIAFNEMWGETWDAKGWYTSTKELQLASLEFCKVCRTYQTLHLNVEARTPRRLLAATDAPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIFAMTDSDRLVFGRGFEGNLEAVA-WPRRLKTIDMRYSNFNKPLERMRFPASLETIVLSEVXXXXXXXXXXXXXXXXXXFSEGSSFNQPITGGFLXXXLQEIALXXXXXXXXXDMVWXXXXLKLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITFASCEDYGDNAVTVYADXXXXXXXXXXXXXXXXXTLGEHFRQSLQGLGTWIPNLEALRLLDHKDGSGTEESLLRGIEWPMVLRHLAVIKGSNLDGVTIPSVVQV 1260
            GP ++SC+   +IA NE    T + + WYTSTKELQLASLEFC  CR YQTLHL V+A+ PRRLLA  DAPP HP+  C TR+PRLRAR VTW M  A EL  PIFAMTD D L FG   E +LEA+  W  R       +S  +    R                                  S  SS      G  L   L  +A+            W                                                                             C    DN V V                     LG+ F+QSLQGLGTW+PNLE LRL D +D     +SLL GI WP  LR LAV + + +DGVTIPS V+V
Sbjct:  107 GPSRSSCLNALVIALNE----TCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFG---ETSLEALRLWHGRDGWKRSSFSFLHYSTSR----------------------------------SVWSS------GQHLCRRLNSVAVVIARAYD-----WICDR-------------------------------------------------------------------------CRRKRDNDVLVLRPTHRQPWLAYVFASTP---LGDDFKQSLQGLGTWMPNLEVLRLFDFRDPDFGNDSLLLGIGWPTGLRQLAVYECTKMDGVTIPSTVEV 377          
BLAST of mRNA_Ecto-sp8_S_contig11214.1573.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.610e-36
Identity = 84/167 (50.30%), Postives = 107/167 (64.07%), Query Frame = 1
Query:   55 SAGVGPDQNSCVKVFIIAFNEMWGETWDAKGWYTSTKELQLASLEFCKVCRTYQTLHLNVEARTPRRLLAATDAPPLHPKRPCG-TRLPRLRARSVTWNMPTAGELRNP--IFAMTDSDRLVFGRGFEGNLEAVAWPRRLKTIDMR-YSNFNKPLERMRFPASLETI 543
            S   GP ++SC+   ++A +E    T D K WYTSTKELQLASL FC  CR +QT+HL V+   PRRLLAA DAPP   +     TR P   A     +  ++G +  P  +FAMTD D L FG  FEGNLEAVAWPR LKTID+  +SNF KP++ + +P SL+T+
Sbjct:  126 STAPGPGRSSCLNAIVVALSE----TCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAPTHSASCDVEHADSSG-IEEPCTVFAMTDVDHLEFGWDFEGNLEAVAWPRWLKTIDLHPWSNFGKPIDLIEWPDSLQTL 287          
BLAST of mRNA_Ecto-sp8_S_contig11214.1573.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.970e-19
Identity = 54/133 (40.60%), Postives = 75/133 (56.39%), Query Frame = 1
Query:   58 AGVGPDQNSCVKVFIIAFNEMWGETWDAKGWYTSTKELQLASLEFCKVCRTYQTLHLNVEARTPRRLLAATDAPPLHPKRPCGTRLPRLRARSVTWNMPTAGELRNPIFAMTDSDRLVFGRGFEGNLEAVAWP 456
            +G  P  +  + V I+  N+  G+    K W+ STKELQLASL+ C+ CR    LHL V   TP RLLA  D+P    +   GTR+PRLRAR V+W++ +A  L + I+A+  +    F       L+AV WP
Sbjct:   20 SGAAPTNSRFLDVVIVVLNQACGDG-GQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPADSPSDGSEE--GTRVPRLRAREVSWDLTSADRLSSSIYALASAQVFTFSDSLNAVLDAVVWP 149          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11214.1573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JRF9_9PHAE1.140e-6551.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA5_9PHAE1.490e-6552.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYF0_9PHAE7.340e-6062.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH81_ECTSI7.680e-5359.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE4.320e-5158.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE2.740e-5060.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRK5_9PHAE6.410e-5058.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI1.090e-4334.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL5_ECTSI1.610e-3650.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0U4_9PHAE5.970e-1940.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11214contigEcto-sp8_S_contig11214:1719..5448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1657
Hectar predicted targeting categoryother localisation
Exons2
Cds size1275
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143201.3900146-UTR-Ecto-sp8_S_contig11214:1718..20911681143201.3900146-UTR-Ecto-sp8_S_contig11214:1718..2091Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11214 1719..2091 -
1681143201.4190786-UTR-Ecto-sp8_S_contig11214:5439..54481681143201.4190786-UTR-Ecto-sp8_S_contig11214:5439..5448Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11214 5440..5448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143201.4002242-CDS-Ecto-sp8_S_contig11214:2091..33081681143201.4002242-CDS-Ecto-sp8_S_contig11214:2091..3308Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11214 2092..3308 -
1681143201.4096434-CDS-Ecto-sp8_S_contig11214:5381..54391681143201.4096434-CDS-Ecto-sp8_S_contig11214:5381..5439Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11214 5382..5439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11214.1573.1prot_Ecto-sp8_S_contig11214.1573.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11214 2092..5439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11214.1573.1

>prot_Ecto-sp8_S_contig11214.1573.1 ID=prot_Ecto-sp8_S_contig11214.1573.1|Name=mRNA_Ecto-sp8_S_contig11214.1573.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=425bp
MSDTRSVMERDAGSGSAGVGPDQNSCVKVFIIAFNEMWGETWDAKGWYTS
TKELQLASLEFCKVCRTYQTLHLNVEARTPRRLLAATDAPPLHPKRPCGT
RLPRLRARSVTWNMPTAGELRNPIFAMTDSDRLVFGRGFEGNLEAVAWPR
RLKTIDMRYSNFNKPLERMRFPASLETIVLSEVFNQPIDRVEFPASLRQL
IFSEGSSFNQPITGGFLPSSLQEIALGEQFNQPIEDMVWPPSLLKLHLGY
EFDQPIQRVVFPPSLQELTVEGSFNQPIEGVSWPDSLQKLALGFSFNRSI
DNVRWPASLQEITFASCEDYGDNAVTVYADFNQSIGSSVWPASLRRLTLG
EHFRQSLQGLGTWIPNLEALRLLDHKDGSGTEESLLRGIEWPMVLRHLAV
IKGSNLDGVTIPSVVQVDFLEHVF*
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mRNA from alignment at Ecto-sp8_S_contig11214:1719..5448-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11214.1573.1 ID=mRNA_Ecto-sp8_S_contig11214.1573.1|Name=mRNA_Ecto-sp8_S_contig11214.1573.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3730bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11214:1719..5448- (Ectocarpus species8 EcLAC_412)
GGTCTGAGTATGAGTGACACACGGAGCGTCATGGAGAGAGACGCCGGTTC GGGGTCCGCAGGGGTTGGTGAGCAAATAACGATCTACATCATTTGGTGCA GACGTCATGTTTTGTTTTTTTTCTCTTCCACGGAAATGGATTCGAGCCTT GCCAGCACCATACGATTTCGTTTTTTTTCTTCCGTTCAGTTGCAGGTGCG GCGCTTGTGCTTTGGTGAGCAGCGTCGGTAACAGGCTGGCATTCGCAGTG AGATACGTTAATAGCTGAAAGGTCTTCCGAGTCCCGCGCGATCGACAGTG TCTACGATTGCGCTTTTGTCTTGCGATCCCGAGATCCAAACATTTACTTT TCTAGATGGCATACAATTCCGCAACGTGTTTGTACGGAGTAGCTCTTCGT GCACTTGCAGCAACGTCGTTGTTTCCATCGCGCGGTGCTCGCATTTTTGT CATGGCTCGACGGCAGCCGGACTCCGCTTTTTTTTTTTTGTATTCGTGGT GCCGCATGTAGTTGGACTCGACTGCTGATGCATCGATTTTACCGAAGTGG AATGCGTTTGTGGCTCTATTTCCTTGGGTGTGCTCCATGGCGGACAGCTC TAAGACCAACAACATGAGGTTTTCAAGTGCATTAAAGGCTGCGGTGTGCG CACGACACTCGCTCAATGGTCGTGTGAAAGTCCTCAGCCGGCAGTGTTTC CTGCAACAGACCAGGGCATGCATACCATTGCACGGATTACAGCTTTCTTA TTTGGACACGCGCGAGAATGTATCAAATGACTGAGTCGCAAGTGACGAAG CATTTCCTCTGGACAATACAGATAGCGCCCGCACTTGCGAATCTGGCAGG TACAAACGTAATTGCTCCCGGTTTCGACTCGCTACACTACAGCTTACATC ACGGCCATTTGTAGCTCGCAAGAGCAACAAAAAAAAACAACCTCGGCCAA ATCTAGAGGTTCTTCCGTGCGGGTGCTATCTGTTGTGAGGAAACAGGTAC ATTTGAAAAGCCTTCGAGGGAGATAGCCGTATATTAGAACCAGTGAGCAA GGTGCATTTCCAACCTTGATCTCAGGCTGCGATCAATCCAAAACCAGCAC ATGTCCTCGATACTACCTTCCAAGCTAACCGTGCTGGTGCTCTTTAGTCA AGTTCGAAGCCCGCGGGCTCTGTCGAGACTTAGACGTTGCACGCCTTTGC CGGAAAGGGGGGTTGTTCTTTCAGTTCCGACTTCTGTTCCCATTCCTTCA CCCACGCCCACACGTGGTGGGTTCCTTGTTTGACGTCCGGGATTTGAGTA GTTTCCCCTACTTTCACCGTGTTCAGGGCACGCCGTAAGTCTTGCTTGCC TGTTGGCTGGAACCTGTTTTATGAAGTCGTGTGATTTATTCGCAATGAGG CGTTCAAAGGTAGTTTTGCAGACAGAAGCTCAAAAATTCTTCATTGACGC TTTGTGCTTACTATGGCCGAGTGTGTCGTGCCGTCGCGAACGTGTATTCC ACCCACCATGGGTAGTACTATTCTTCCAAGGATAATTTCTCTTTCAAGTC GGCCGGAACGCAACGGATACTTCTTCCGACAAACGTACGAAGGTGTGACG TAAACTGAGGATGTTGCGCTCGAGAACGGGTTCGCCCAGCCCTTCGTGGA AAAACCTCACTACCATCGGCGGGTAGTTACGGTCAGCGTCGGCCTGTGGT GCGAAATCCTCATGGCGTTGGCCACCTTATCGTGCACAAGACAGACGAAA ACCTCACGTTGTTACCCCAATGACCAAAACGCACATTTGCCCTACAGCCA ATCACTTGGTAGTCAGCACACCCAGGTCGAAGCTTCGAATTTTTCATCTG AAGTCGATGGTCTTTTTTTTTGTGCAAGCAGGTTGGGTGTGGAATGATTT GACCAAGAAAACGATGTGTATCGCCGACAAGATAAAAGAAAAACCAAAGA TTTGGGGATTTGAGGCAACCCCCGCCAGGACGTTTGTTTGTACAAGAGTG TGGGCATTCCACCGTTTTCGTTTCCGGTTCTATCGTGGCGCTGTAGCAGT TACGTGGTTTGCGTTCAAGCGCTGAGCGGTGTCGGAAGACGCCATATTTT TCCCGACGAATACGCCCACACATCGTGCCTTCTGCCGCAGGACCCGATCA GAACTCGTGCGTAAAGGTCTTCATCATTGCTTTCAACGAGATGTGGGGCG AGACGTGGGACGCAAAGGGTTGGTACACGTCGACCAAGGAGCTGCAGCTG GCTTCATTGGAGTTCTGTAAGGTGTGCAGAACTTATCAGACCTTGCACTT GAATGTCGAGGCAAGAACGCCACGCAGGCTGCTGGCCGCCACCGACGCCC CCCCCCTGCACCCGAAGCGGCCATGTGGCACACGCTTGCCGCGTCTACGA GCACGAAGCGTGACGTGGAACATGCCGACAGCTGGAGAATTGAGGAACCC CATCTTTGCAATGACGGACTCGGACCGCCTGGTGTTTGGCCGTGGGTTTG AAGGCAACCTAGAAGCTGTGGCATGGCCGCGACGGCTGAAAACGATCGAC ATGCGCTACTCCAATTTTAACAAGCCTCTCGAACGGATGAGATTTCCGGC GTCGCTGGAGACGATCGTCCTCTCGGAAGTGTTCAACCAACCGATCGATC GTGTCGAGTTTCCGGCATCGCTACGGCAGCTAATATTCTCCGAAGGTTCA AGTTTCAACCAACCGATTACCGGAGGTTTTCTGCCTTCTTCGCTGCAGGA GATTGCCTTGGGGGAACAGTTCAACCAACCTATTGAAGATATGGTTTGGC CGCCGTCCCTGCTGAAGCTCCATTTGGGCTACGAATTCGACCAGCCGATC CAACGGGTTGTTTTTCCGCCATCGCTGCAAGAGCTCACCGTCGAGGGGAG CTTTAACCAGCCCATCGAGGGAGTTTCATGGCCAGATTCCCTTCAGAAGC TCGCTTTGGGATTTAGTTTCAACCGGTCAATTGACAACGTAAGATGGCCG GCGTCATTGCAAGAGATTACGTTTGCATCTTGCGAAGACTACGGGGACAA TGCGGTAACGGTGTATGCGGACTTCAACCAGAGCATCGGCAGCAGCGTCT GGCCTGCATCGCTCCGGCGACTCACACTAGGCGAACATTTCAGGCAGTCA CTGCAAGGACTGGGAACTTGGATCCCCAACCTTGAGGCGCTCCGTCTTCT TGACCATAAGGATGGTTCCGGTACCGAAGAAAGCCTTCTCCGCGGAATCG AATGGCCTATGGTCCTTCGCCACCTGGCTGTGATTAAAGGATCGAACTTA GATGGGGTCACAATTCCTTCAGTTGTACAGGTCGATTTCCTGGAGCACGT GTTTTGATTGTGATGAGAAAAGCAGTTTTTTCTGTAGTCAGATGCCTCAC TAACCTTCAGAGATTCTTTCGTATGGAAGTGGAGATAATATTTGGAAAGT AGAGAGTAGTACCGTCACCAACAATCGGAGAGTTTGCATGGGCACCAAAC ATTTCTGTCACATGAGGCGATTTTCTCACGTCGTTTGATGACACGAAGAT GACATCTCAAACTGTTCCTGTTCGGTGTATTAATAGTCTACGTACGTAGA TGCGGCTGTTCCGGGTTTGATGGATGTGCTTTTTGAGGTTTCTGTCAGGG ATCGTCCAAAACGTCCCTAAGTTCCTGCTGCTCGTTGGTCTACACAGTAT CCGATGTTCACCATTCGACTGAGAGGTGAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11214:1719..5448-

>mRNA_Ecto-sp8_S_contig11214.1573.1 ID=mRNA_Ecto-sp8_S_contig11214.1573.1|Name=mRNA_Ecto-sp8_S_contig11214.1573.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1275bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11214:1719..5448- (Ectocarpus species8 EcLAC_412)
ATGAGTGACACACGGAGCGTCATGGAGAGAGACGCCGGTTCGGGGTCCGC
AGGGGTTGGACCCGATCAGAACTCGTGCGTAAAGGTCTTCATCATTGCTT
TCAACGAGATGTGGGGCGAGACGTGGGACGCAAAGGGTTGGTACACGTCG
ACCAAGGAGCTGCAGCTGGCTTCATTGGAGTTCTGTAAGGTGTGCAGAAC
TTATCAGACCTTGCACTTGAATGTCGAGGCAAGAACGCCACGCAGGCTGC
TGGCCGCCACCGACGCCCCCCCCCTGCACCCGAAGCGGCCATGTGGCACA
CGCTTGCCGCGTCTACGAGCACGAAGCGTGACGTGGAACATGCCGACAGC
TGGAGAATTGAGGAACCCCATCTTTGCAATGACGGACTCGGACCGCCTGG
TGTTTGGCCGTGGGTTTGAAGGCAACCTAGAAGCTGTGGCATGGCCGCGA
CGGCTGAAAACGATCGACATGCGCTACTCCAATTTTAACAAGCCTCTCGA
ACGGATGAGATTTCCGGCGTCGCTGGAGACGATCGTCCTCTCGGAAGTGT
TCAACCAACCGATCGATCGTGTCGAGTTTCCGGCATCGCTACGGCAGCTA
ATATTCTCCGAAGGTTCAAGTTTCAACCAACCGATTACCGGAGGTTTTCT
GCCTTCTTCGCTGCAGGAGATTGCCTTGGGGGAACAGTTCAACCAACCTA
TTGAAGATATGGTTTGGCCGCCGTCCCTGCTGAAGCTCCATTTGGGCTAC
GAATTCGACCAGCCGATCCAACGGGTTGTTTTTCCGCCATCGCTGCAAGA
GCTCACCGTCGAGGGGAGCTTTAACCAGCCCATCGAGGGAGTTTCATGGC
CAGATTCCCTTCAGAAGCTCGCTTTGGGATTTAGTTTCAACCGGTCAATT
GACAACGTAAGATGGCCGGCGTCATTGCAAGAGATTACGTTTGCATCTTG
CGAAGACTACGGGGACAATGCGGTAACGGTGTATGCGGACTTCAACCAGA
GCATCGGCAGCAGCGTCTGGCCTGCATCGCTCCGGCGACTCACACTAGGC
GAACATTTCAGGCAGTCACTGCAAGGACTGGGAACTTGGATCCCCAACCT
TGAGGCGCTCCGTCTTCTTGACCATAAGGATGGTTCCGGTACCGAAGAAA
GCCTTCTCCGCGGAATCGAATGGCCTATGGTCCTTCGCCACCTGGCTGTG
ATTAAAGGATCGAACTTAGATGGGGTCACAATTCCTTCAGTTGTACAGGT
CGATTTCCTGGAGCACGTGTTTTGA
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