mRNA_Ecto-sp8_S_contig11205.1566.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11205.1566.1
Unique NamemRNA_Ecto-sp8_S_contig11205.1566.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11205.1566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11205contigEcto-sp8_S_contig11205:2350..5761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size984
Hectar predicted targeting categoryother localisation
Exons6
Cds size984
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11205.1566.1prot_Ecto-sp8_S_contig11205.1566.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11205 2350..5761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143200.7180464-CDS-Ecto-sp8_S_contig11205:2349..23761681143200.7180464-CDS-Ecto-sp8_S_contig11205:2349..2376Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11205 2350..2376 +
1681143200.7255156-CDS-Ecto-sp8_S_contig11205:2811..30291681143200.7255156-CDS-Ecto-sp8_S_contig11205:2811..3029Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11205 2812..3029 +
1681143200.732547-CDS-Ecto-sp8_S_contig11205:4349..44781681143200.732547-CDS-Ecto-sp8_S_contig11205:4349..4478Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11205 4350..4478 +
1681143200.73966-CDS-Ecto-sp8_S_contig11205:4698..47791681143200.73966-CDS-Ecto-sp8_S_contig11205:4698..4779Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11205 4699..4779 +
1681143200.746793-CDS-Ecto-sp8_S_contig11205:4915..50441681143200.746793-CDS-Ecto-sp8_S_contig11205:4915..5044Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11205 4916..5044 +
1681143200.7539072-CDS-Ecto-sp8_S_contig11205:5361..57611681143200.7539072-CDS-Ecto-sp8_S_contig11205:5361..5761Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11205 5362..5761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11205.1566.1

>prot_Ecto-sp8_S_contig11205.1566.1 ID=prot_Ecto-sp8_S_contig11205.1566.1|Name=mRNA_Ecto-sp8_S_contig11205.1566.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=328bp
MLHFVKRRVKRHQQQQLLQQQQRRRRQQQRPAAAPSISATETPRVSAAPL
VSPPGALSDAGIRPRQQECGHPTQGTSRVDVSEAASKYIVTRDFKARGGT
VPADKVIWRKVVTKNHKTVFRLCSRLTMAVNYQEREWGEGSQCRCLASPE
EKARAEAKLASDDQRILQPAGHDPNRRIHFLYDNVGTFLCKVKTSRRHAV
RLQSEIYHRADQERQLRQPVRVSQHLPPPPVVGNRVWEPVIGSDVELLLP
KALAGGAVKDFWYRVRVWELDSNGKVVFGFLVSQSRTEKITKFSSVYDYD
EVVREKGYVVRPGTHLTWKVMPTSAAP*
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mRNA from alignment at Ecto-sp8_S_contig11205:2350..5761+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11205.1566.1 ID=mRNA_Ecto-sp8_S_contig11205.1566.1|Name=mRNA_Ecto-sp8_S_contig11205.1566.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3412bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11205:2350..5761+ (Ectocarpus species8 EcLAC_412)
ATGCTTCACTTTGTGAAGAGAAGAGTGGTGAGTGGAACGTGAGCCGTCAA
ACGAGTGTTTGTCCCAAACTATGTACAAGTGCCATGCTGAATCCCGTTGG
AATGAACAACACGTTCCCGTTGGACTGTGGCGCCACTGATCGCAACCGGG
ACTGCTAGCGACACAAAGTCAGGCAAACCGTATGGCCCTCTAAGAAGAAT
GCATTATCTTGGATGGACGTACCAATGGGTAAAGCATGTGCTGTGTACGA
CGTGGCCCGGTGTTGGGTAGAGCGTGTCGATCCAGCTCCCGGTGGATTGC
GAACCGCGGTTCCAACGATTCTTCGTTTGTGTTGGGTAGCTGCTACGGCA
GCTGAATGGACAAAGACAGCGGCTGTACAAGGGGATCAGATGACTAAAAC
GCGAGAGCTAAGACACGACCCGTCTTTCCCGCCTGTCATACCATACTTCA
CCATAAACGCAGAAGCGTCACCAGCAGCAGCAGCTGCTGCAGCAGCAGCA
ACGGCGGAGGCGGCAGCAGCAGCGGCCAGCGGCAGCCCCGAGTATATCGG
CGACCGAGACACCGCGGGTGTCCGCAGCACCGCTAGTATCCCCACCGGGT
GCGCTCAGTGACGCGGGGATTCGGCCCCGCCAGCAGGAGTGTGGGCACCC
AACACAAGGGACATCGCGAGTGGACGTCTCGTCAAGGCAAGCATCAGCAG
CAACACACTCGCCAGATTACTTCATCGCGTAGACTAGTCTACACAAGTAG
TGGCCCTCGAGCCATTTCCCCCAGAGCAGTCTGTTTCCTCTCTTTCCGCT
GGTTGGAGGAATGAGCCCTCTCGCCCAGGCCGAGGTGAGTGAACAAACCA
CTATCATCTAATCGGTAAAGTTACACCATTACACCAGTCAGCGAGCCGCT
GACTGGTGTAGCCGCTGACTGGTGTAATGGTGTAACTTTACCGATTAAAA
GATATGCGCTCAGCTCGTGAGCACCCGGCCGGACCAATGGGGATTGCGTT
GAGTTGGAGTAGAGATCTCCGGGGAATGTCCCCTCGCCAGGCTGCCGGAA
ATAACTGAATGGTGCTTGCGGAGGTGACCCCACCGGGATTCGAACCCGTG
CGTGCAAGCTAACTGGTGTAATGGTGTAACGTTACTGATTAAAAAACATG
CGCTCAGCTCTCCAGCACCCGGCCGCGCTGACTGGTGCAATGGTGTGACT
TTACCGATTGAAGGGTATCCGCACGAGTTCGAACACGGGCCGGATCACTT
TTCTTTGCGAAAAGGTTCTCCTGGAACCACAGCTCAGCCTGGCGAGGGGA
TAATATTTGCTGCAGGATGTATGTAGAGATCGATGCTTTGATACAGCTTG
CGACAGAGCGCGAGAGAGAATGGACCCACACCCCGTGTAGCAGGGCCATA
AGAATTCATGAACCTAGGCAATAGCTTGGCCAAACACCCTGTACCACTTC
TGCAGATAGGTGCAGTGGTGGTGTTTTTCACGGGTGCCTCCCCGTCCATT
CTCTCGCATGTGGCTGACGTTGCACAGTGTTGTTACTTCAGCCGCAGAAA
GCGCAGCCGAGCAACCAGATGGTCAATTGCCACGACCGTATAGCGAGGCT
GAGGCGATTCTCATCGGTGTGGTCAATAATGGCGTTTGTGTACATTTGGT
CTCCCTTTGGCTTGATCACAAATCCTGTCGCACTTTGCTGTACGCGTGTC
TCAAACGTTTCATACAAGAGGCATTGGTCGGTTTGTACATGATGCTTGCT
CAACAAGGTTCAACCTGTTGACCCCCCCCTCCCCGCGCTTGGTGATGTGA
GAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCCTCCCGGCTTTGTAGGGA
TGCGAGGTCAATGGTCTAACGACTACGGCATGCACGACTATGAGTACATC
CCCCCCCCTTACGCCCCCGGCATCGTTGTCCTTTTCGGACTTGTTCCTCC
TGCTTGCCTTTTCCTTGTACTTGTGTCGACGTGCGGTTGTACTCCTGTAG
GGAGGCCGCGTCAAAATATATCGTCACGAGGGACTTCAAGGCCCGCGGAG
GAACGGTCCCTGCAGACAAGGTCATCTGGCGCAAAGTGGTCACCAAGAAC
CACAAGACAGTTTTTCGGCTGTGCTCGAGGTGCACGAATGACGGCGCCAC
TTGAACATCTTGGTGTTGTACATATGGTGGACGCCATGACGGGTGCAACC
CTAGACCATATTTGTAGCTAACCCCGTATTGTTGTTGAAGCCGAGCGTTC
CCTTTCTCCCTCTCATGCCTCATCCTCGCTCTACACCGGACAACTCTCAT
CTTTCCGTCTCGACCTCTCTCCTCTCTACGCTGTTCGGCCTTCGTATAGG
TTGACAATGGCCGTAAATTACCAGGAGCGGGAATGGGGTGAAGGTTCACA
GTGCCGATGCCTAGCCTCGCCGGAAGAAAAGTGAGTATAGACAGGACGTG
TCGGAAATCATCGCTTCTGGCGTGCGGAGTTTTCTGAAGAACAGTGCCAT
ACTTCATACATATCGCCTCATTGCTGAACGACTTCGCTGCTTCGTGGCCC
CTCCTATCGGCTGCAGGGCGCGGGCAGAAGCAAAGTTGGCGTCAGATGAC
CAGCGTATCCTTCAACCCGCAGGCCATGATCCGAATAGACGAATACACTT
CCTGTACGACAACGTTGGCACCTTTCTGTGCAAGGTCAAGACCAGGTGCA
AATGGTTCAACCCTCACGAGAGGCTGGGAAGGATGACGAAACACACCAGG
CAGATTGGATACTAGCGAATGGTACCACTCTGGCCGTAGAGGGGAATGAA
CACTTAGGTGTGAGAAATCTCTTTTGTGAGTCTGCAAGTTTGGTCGAACC
TCCAACGATGTAGCCGAAGTACATGAGATGGAATCTTCCTTGAAGATGTA
GATGGATCATCTGGTCGTAGTGTCTCGGACCACATGCCATTCGAATGCTC
AACCCATCATTTCGCCCCCTCTAAGCCCCGATTTTCGACGACCGGCTGCC
GACTTCGAATAGCCGCCGCCACGCGGTACGGCTGCAGTCGGAGATCTACC
ACAGGGCTGACCAAGAGCGGCAGCTACGGCAGCCGGTCCGCGTGTCTCAG
CACCTGCCACCGCCACCGGTGGTTGGAAACCGAGTTTGGGAGCCCGTCAT
CGGGTCTGACGTCGAATTGCTCTTGCCCAAGGCGCTTGCGGGGGGTGCCG
TGAAGGACTTCTGGTACCGCGTAAGGGTTTGGGAGTTGGACAGCAATGGA
AAGGTCGTGTTCGGCTTCCTCGTCAGTCAATCAAGAACTGAGAAGATAAC
AAAGTTTTCGTCAGTGTACGACTATGACGAGGTCGTCCGAGAGAAGGGAT
ACGTGGTCCGCCCCGGTACCCACCTCACGTGGAAAGTCATGCCTACATCG
GCGGCACCATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11205:2350..5761+

>mRNA_Ecto-sp8_S_contig11205.1566.1 ID=mRNA_Ecto-sp8_S_contig11205.1566.1|Name=mRNA_Ecto-sp8_S_contig11205.1566.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=984bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11205:2350..5761+ (Ectocarpus species8 EcLAC_412)
ATGCTTCACTTTGTGAAGAGAAGAGTGAAGCGTCACCAGCAGCAGCAGCT
GCTGCAGCAGCAGCAACGGCGGAGGCGGCAGCAGCAGCGGCCAGCGGCAG
CCCCGAGTATATCGGCGACCGAGACACCGCGGGTGTCCGCAGCACCGCTA
GTATCCCCACCGGGTGCGCTCAGTGACGCGGGGATTCGGCCCCGCCAGCA
GGAGTGTGGGCACCCAACACAAGGGACATCGCGAGTGGACGTCTCGGAGG
CCGCGTCAAAATATATCGTCACGAGGGACTTCAAGGCCCGCGGAGGAACG
GTCCCTGCAGACAAGGTCATCTGGCGCAAAGTGGTCACCAAGAACCACAA
GACAGTTTTTCGGCTGTGCTCGAGGTTGACAATGGCCGTAAATTACCAGG
AGCGGGAATGGGGTGAAGGTTCACAGTGCCGATGCCTAGCCTCGCCGGAA
GAAAAGGCGCGGGCAGAAGCAAAGTTGGCGTCAGATGACCAGCGTATCCT
TCAACCCGCAGGCCATGATCCGAATAGACGAATACACTTCCTGTACGACA
ACGTTGGCACCTTTCTGTGCAAGGTCAAGACCAGCCGCCGCCACGCGGTA
CGGCTGCAGTCGGAGATCTACCACAGGGCTGACCAAGAGCGGCAGCTACG
GCAGCCGGTCCGCGTGTCTCAGCACCTGCCACCGCCACCGGTGGTTGGAA
ACCGAGTTTGGGAGCCCGTCATCGGGTCTGACGTCGAATTGCTCTTGCCC
AAGGCGCTTGCGGGGGGTGCCGTGAAGGACTTCTGGTACCGCGTAAGGGT
TTGGGAGTTGGACAGCAATGGAAAGGTCGTGTTCGGCTTCCTCGTCAGTC
AATCAAGAACTGAGAAGATAACAAAGTTTTCGTCAGTGTACGACTATGAC
GAGGTCGTCCGAGAGAAGGGATACGTGGTCCGCCCCGGTACCCACCTCAC
GTGGAAAGTCATGCCTACATCGGCGGCACCATGA
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