mRNA_Ecto-sp8_S_contig11201.1564.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11201.1564.1
Unique NamemRNA_Ecto-sp8_S_contig11201.1564.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11201.1564.1 vs. uniprot
Match: A0A6H5JZZ5_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ5_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.090e-36
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 1 
Query:    1 MQILTDGLPSVREIEEEISDVRVKMDTAVSEKNYADAEKFRVRLTELAEEKTLASEKEQHSNSSPQDPVAKVRAALRIL 237
            MQ+LTDGLPSVREIEE+ISDVRVKMDTAVSEKNYADAEKFRVRLTELAEEK LASEKEQHSNSSPQDPVAKVRAA RI 
Sbjct: 1383 MQVLTDGLPSVREIEEDISDVRVKMDTAVSEKNYADAEKFRVRLTELAEEKALASEKEQHSNSSPQDPVAKVRAAFRIF 1461
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BLAST of mRNA_Ecto-sp8_S_contig11201.1564.1 vs. uniprot
Match: D7G6N9_ECTSI (Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 4.590e-35
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 MQILTDGLPSVREIEEEISDVRVKMDTAVSEKNYADAEKFRVRLTELAEEKTLASEKEQHSNSSPQDPVAKVRAAL 228
            MQILTDGLPSVREIEEEISDVRVKMDTAVSEKNYADAEKFRVRLTELAEEK LASEKEQHSNSSPQDPVAK RA L
Sbjct: 1321 MQILTDGLPSVREIEEEISDVRVKMDTAVSEKNYADAEKFRVRLTELAEEKALASEKEQHSNSSPQDPVAKARARL 1396
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11201.1564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZZ5_9PHAE1.090e-3693.67Myosin motor domain-containing protein n=1 Tax=Ect... [more]
D7G6N9_ECTSI4.590e-3596.05Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11201contigEcto-sp8_S_contig11201:524..1306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score137.5
Seed ortholog evalue2.7e-30
Seed eggNOG ortholog2880.D7G6N9
Model size240
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
Cds size240
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143200.6085649-CDS-Ecto-sp8_S_contig11201:523..7071681143200.6085649-CDS-Ecto-sp8_S_contig11201:523..707Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11201 524..707 -
1681143200.6191049-CDS-Ecto-sp8_S_contig11201:1250..13061681143200.6191049-CDS-Ecto-sp8_S_contig11201:1250..1306Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11201 1251..1306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11201.1564.1prot_Ecto-sp8_S_contig11201.1564.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11201 524..1306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11201.1564.1

>prot_Ecto-sp8_S_contig11201.1564.1 ID=prot_Ecto-sp8_S_contig11201.1564.1|Name=mRNA_Ecto-sp8_S_contig11201.1564.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=80bp
MQILTDGLPSVREIEEEISDVRVKMDTAVSEKNYADAEKFRVRLTELAEE
KTLASEKEQHSNSSPQDPVAKVRAALRIL*
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mRNA from alignment at Ecto-sp8_S_contig11201:524..1306-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11201.1564.1 ID=mRNA_Ecto-sp8_S_contig11201.1564.1|Name=mRNA_Ecto-sp8_S_contig11201.1564.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=783bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11201:524..1306- (Ectocarpus species8 EcLAC_412)
ATGCAGATCTTAACCGACGGGCTTCCTAGCGTTCGCGAGATCGAGGAGGA
AATCAGGTATCTACGAAGATTTCATTTGTGTTGAATCTGTTAAAATATTG
TCGTATCATACAAAAACAACGCAGATGCTTGTCCATGTTTGGGGTGGAAA
CAGGAGGTAGTGATTGCTGTTCAAGAATGCGGTATGACTGATCCTCGTGT
ATTGTGCAGTGACAGCTCCTGCATGGGCACGGTGCCATTCCCGCACAAGT
CAGCAGAATGCCTCTTTGCACTCGGAACTCCTCGGTCTCGTCGCCTAAAC
GACTTCCACTGGTCCCCCAGCATGCCCCCAATCTGTCTCGTGGCGCTTGC
GCTGGCGCTGGCTTTGTCCTGCCAATGTTGGCGTCGTCTCGCTTTGGTGG
TGGCGTCTTGTTGTTGCTGTGCAGACGTACTGTAGACCTTGCTGCCGTAG
TCTAGCCTAGCGCTGGTCCCACCCTACCACGCTGTTGCTATCCTCTCCAA
GAGTCTAGCGTAGCGCTGAAATCCCACGCTGCTACGCCTGTGTTGCTTAC
TCCCCTCGACTGTGTTGCTACCTCTCCTCGCCGCTGGCTGTTTGTCCAGC
GATGTCCGTGTCAAGATGGACACTGCCGTGTCCGAGAAGAACTACGCGGA
CGCCGAGAAGTTCCGGGTAAGGCTTACCGAGCTCGCCGAGGAGAAGACTC
TAGCATCCGAGAAGGAGCAGCACTCCAACTCCAGCCCTCAAGACCCGGTG
GCCAAGGTAAGGGCGGCCTTGCGTATTTTATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11201:524..1306-

>mRNA_Ecto-sp8_S_contig11201.1564.1 ID=mRNA_Ecto-sp8_S_contig11201.1564.1|Name=mRNA_Ecto-sp8_S_contig11201.1564.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11201:524..1306- (Ectocarpus species8 EcLAC_412)
ATGCAGATCTTAACCGACGGGCTTCCTAGCGTTCGCGAGATCGAGGAGGA
AATCAGCGATGTCCGTGTCAAGATGGACACTGCCGTGTCCGAGAAGAACT
ACGCGGACGCCGAGAAGTTCCGGGTAAGGCTTACCGAGCTCGCCGAGGAG
AAGACTCTAGCATCCGAGAAGGAGCAGCACTCCAACTCCAGCCCTCAAGA
CCCGGTGGCCAAGGTAAGGGCGGCCTTGCGTATTTTATGA
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