mRNA_Ecto-sp8_S_contig1120.1561.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1120.1561.1
Unique NamemRNA_Ecto-sp8_S_contig1120.1561.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1120.1561.1 vs. uniprot
Match: D8LC34_ECTSI (Transmembrane protein 138 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC34_ECTSI)

HSP 1 Score: 372 bits (955), Expect = 4.100e-130
Identity = 188/195 (96.41%), Postives = 188/195 (96.41%), Query Frame = 1 
Query:    1 MAAVARNASVTTGGDSILFRVKLFIMVFLTVVDMTLNSSVEHETFGTWDETGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRVAAMVQAEEGMGIWQVWDLRGYLPFSIFHKIGECRRRHLAPPAVPPAEQPVVSFCSDEHLNLAPSTRQAVMKTREA 585
            MAAVARNASVTTGGDSILFRVKLFIMVFLTVVDMTLNSSVEHETFGTWD TGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRVAAMVQ EEGMGIWQVWDLRGYLP SIFHKIGECRRRHLAPPAVPPAEQPVVS C DEHLNLAPST QAVMKTR A
Sbjct:    1 MAAVARNASVTTGGDSILFRVKLFIMVFLTVVDMTLNSSVEHETFGTWDGTGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRVAAMVQGEEGMGIWQVWDLRGYLPLSIFHKIGECRRRHLAPPAVPPAEQPVVSLCGDEHLNLAPSTSQAVMKTRAA 195
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BLAST of mRNA_Ecto-sp8_S_contig1120.1561.1 vs. uniprot
Match: A0A6H5JIR8_9PHAE (Transmembrane protein 138 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR8_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 3.150e-97
Identity = 145/152 (95.39%), Postives = 147/152 (96.71%), Query Frame = 1 
Query:    1 MAAVARNASVTTGGDSILFRVKLFIMVFLTVVDMTLNSSVEHETFGTWDETGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRVAAMVQAEEGMGIWQVWDLRGYLPFSIFHKIGE 456
            M AVARNASVTTGGD ILFRVKLFIMVFLTVVDMTLNSSVEHETFGTWD TGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVY+INVLYFVTTACVYGYRVAAMVQ EEGMGIWQVWDLRGYLP SIFHKIG+
Sbjct:    1 MTAVARNASVTTGGDCILFRVKLFIMVFLTVVDMTLNSSVEHETFGTWDGTGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYIINVLYFVTTACVYGYRVAAMVQGEEGMGIWQVWDLRGYLPLSIFHKIGD 152
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BLAST of mRNA_Ecto-sp8_S_contig1120.1561.1 vs. uniprot
Match: A0A836CBT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.390e-23
Identity = 61/154 (39.61%), Postives = 86/154 (55.84%), Query Frame = 1 
Query:   37 GGDSILFRVKLFIMVFLTVVDMTLNSSVEHETFG--TWDETGRD-GTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRVAAMVQAEEGMGI-----------WQVWDLRGYLPFSIFHKIGE 456
            GG    F+ KL +++ L + D+ LN SVE++++   T D  G D  T LVL+ G QL+VQV     LF+MMF+T+PF+ GLMG++   Y  VY +N  Y   TA +YGYR+A ++    G              W  WD   Y+ FSI HK+ E
Sbjct: 1288 GGADAWFQAKLTVLMLLMLADVLLNGSVEYDSYSQLTLDGGGDDVDTILVLVHGVQLLVQVAVLLTLFIMMFDTWPFKAGLMGLVAVHYKWVYAVNGAYITATALLYGYRLAKLIGTSGGXXXXXXXXXXXXXAWDPWDSGAYMAFSIMHKLDE 1441
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BLAST of mRNA_Ecto-sp8_S_contig1120.1561.1 vs. uniprot
Match: A0A7S4E2F6_9STRA (Transmembrane protein 138 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E2F6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.030e-5
Identity = 41/139 (29.50%), Postives = 69/139 (49.64%), Query Frame = 1 
Query:   64 KLFIMVFLTVVDMTLNSSVEHETFGTWDETGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRV--AAMVQAEEGMG------IWQVWDLRG--YLPFSIFHKI 450
            K  I+  L + D+  NS++E++    WD       +   + G Q+ +++  FA +FLM+ ETYPFRVGL+  L +++ +++ ++ LY   +  V  YR+     V    G G      +W   D  G  Y   S  HK+
Sbjct:   28 KTIILFGLLLTDLVFNSTLEYDE---WD-------SYPTMFGIQVFIEICTFAVVFLMLCETYPFRVGLLDALLAEFRSIFWVHPLYVCWSLLVGIYRIFLGRQVSKYSGAGFRRLPNMWDTSDPAGETYTYLSHTHKL 156
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1120.1561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LC34_ECTSI4.100e-13096.41Transmembrane protein 138 n=1 Tax=Ectocarpus silic... [more]
A0A6H5JIR8_9PHAE3.150e-9795.39Transmembrane protein 138 n=1 Tax=Ectocarpus sp. C... [more]
A0A836CBT6_9STRA4.390e-2339.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4E2F6_9STRA1.030e-529.50Transmembrane protein 138 n=1 Tax=Pelagomonas calc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1120contigEcto-sp8_S_contig1120:3930..6212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score61.2
Seed ortholog evalue6.1e-07
Seed eggNOG ortholog4787.PITG_12212T0
Model size588
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Transmembrane protein 138
EggNOG OGs2E45E@1,2SB3Q@2759,3QG83@4776
Cds size588
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143200.4186203-CDS-Ecto-sp8_S_contig1120:3929..39641681143200.4186203-CDS-Ecto-sp8_S_contig1120:3929..3964Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1120 3930..3964 +
1681143200.4297223-CDS-Ecto-sp8_S_contig1120:4673..48261681143200.4297223-CDS-Ecto-sp8_S_contig1120:4673..4826Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1120 4674..4826 +
1681143200.4387312-CDS-Ecto-sp8_S_contig1120:5250..54221681143200.4387312-CDS-Ecto-sp8_S_contig1120:5250..5422Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1120 5251..5422 +
1681143200.4481084-CDS-Ecto-sp8_S_contig1120:5984..62121681143200.4481084-CDS-Ecto-sp8_S_contig1120:5984..6212Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1120 5985..6212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1120.1561.1prot_Ecto-sp8_S_contig1120.1561.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1120 3930..6212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1120.1561.1

>prot_Ecto-sp8_S_contig1120.1561.1 ID=prot_Ecto-sp8_S_contig1120.1561.1|Name=mRNA_Ecto-sp8_S_contig1120.1561.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=196bp
MAAVARNASVTTGGDSILFRVKLFIMVFLTVVDMTLNSSVEHETFGTWDE
TGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLT
VYVINVLYFVTTACVYGYRVAAMVQAEEGMGIWQVWDLRGYLPFSIFHKI
GECRRRHLAPPAVPPAEQPVVSFCSDEHLNLAPSTRQAVMKTREA*
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mRNA from alignment at Ecto-sp8_S_contig1120:3930..6212+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1120.1561.1 ID=mRNA_Ecto-sp8_S_contig1120.1561.1|Name=mRNA_Ecto-sp8_S_contig1120.1561.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2283bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1120:3930..6212+ (Ectocarpus species8 EcLAC_412)
ATGGCTGCGGTGGCCAGGAACGCATCAGTGACAACGTGAGACCACGCACT
GGTAACTAGGTGCTGTCCTGAAGCTCGTCGAGATACCGCCGTCGGCAGGC
ATTTCGGTCTAGGCTCTACGTTCCACGCTTCTCCCACCGCTGCTCTGTTG
GATGGAACTTGTGATACTTTGATTCGCTCATCTCCGCGTGATCATCAGCT
GCGCGCTGGTAAAACAATTCCGCCGCATTTTTCACACAACCTCGAAGGAT
CCGAGTTGTGTTTGGCCCTGACCGATGTTCACATCTTTTGTCTTGTCACC
GGCGACCGGCTCACTGCTGCACCCTCGGGTCCTTGCGCACCCGCGGGTGG
AGTACAACAAGGACGAAAAAGAAGCACACAGCAGTATCCAATGGTACAGT
AGAAATCCAAGGATATCCTTTTCACCTTTTGAACGAGTATCGTTGAAGAG
ATTACTGCTATAGTCTACCGCCGGCGCGATGCGCATCGTGTACAATACTC
TAGCACGACATATAGAGCACACTCAACACCTATGCAAACGTTGGTGGAAA
CAAGCAGCCTGTTCTCGTTGTCGCCATTGTCCTGTAAAGCTATTCAGCTA
CCGAACGCACCGCTGTGGTACAGCAGTACAGGTGACACGACGCTCTTGAC
TGTAGCCTGTATATCTCCATCACAACCTCGAGGATTGCATATATCTTTGA
AGTATCTGCGCATGACTGTGTTTCTTGCCGGCTTCTCGTGTCAGTGGGGG
CGACTCTATCTTGTTCAGGGTGAAGCTTTTCATCATGGTGTTTCTGACGG
TCGTCGACATGACTCTCAACAGCAGCGTGGAGCACGAAACGTTTGGCACT
TGGGACGAGACCGGGAGGGACGGAACCGCGTTGGTGCTCATCCTTGGGTA
AGGAAGGCCTGCCGGGATTTGAGCGAGGCATAGGTTTCCCTACTGGAGGG
GCTGGTGTGCTACACACGCTTGACGGGCTTCCATCCATCCACCGTAGAAC
CTTGGGCGCCACTTCCAGTCTAGGACTTCGATTAAAAACACTTCTTGTGA
CTTACAGTAGTACATATACGGAGTGCATTGTTTGGGTGCGGTACTCTGCC
AAGCAACCCAAACATACATGAATGTGACATAATTTGCTACATACCCCACA
GAGGGAACAAGCCGCGAGCGAGCCTCGCGCCAAGTGTAGGGGTTGATTCT
GTATGTGTAGATGGAATTATGCACTCAATCGATCTGGCCATATCCTCACG
AGTGAGACACCCGCCTCGGCTCACAGATAACCCGCACCCCTCTTTTGGAC
CTGTGTTCCAAATACATACAGGTTTCAGCTCGTGGTCCAAGTGGGAAACT
TCGCTTGTCTCTTTCTTATGATGTTTGAGACTTACCCGTTTCGAGTCGGG
CTTATGGGGATGCTGACGTCGCAATACCTGACGGTGTACGTCATAAACGT
CTTGTATTTTGTCACGACAGCCTGCGTCTACGGCTATCGAGTGGTGAGAG
ACACGACAAAACGTAGCATCGTCGGACGAAAGTGTTGACACCCGCATGTA
GCGTATCGAAGGGCTTTATATCAGAACGGCCTCCAAACCCTGCTCCACGA
GCCTGGGAGTCGCTGTGACGAGCATGTTGGATTGGTGCAATTGGCCATGT
CTTTTGAACAATAAGCAGCACCTACATTGTGTTCTTTCTATCAACACGGC
TGTAAAATATTGCCAAGGGAATGGATTTTATGTAGTTCCTCTAAACCCCG
CCAACTACTAGCACGTCTCCAACAGATTAGCGTGCGGAAGCGCATACTGA
GACTATTATCTCGTACTGCAAGGGGCTAACCACGGGCTTCAAAACTTCTG
AGCTTTGACGCCGCTGTTAACTCCGCGATCAATCCAGATTAGGTTTTATC
ACATGGCTATCTTGAGACAACCGTCCCTACCCTTCTAGCAGCGACAAGCC
CAGCTCGTGGTTGACAGCCTGTGTTCTTTCACATCCCACCGCACGTCTCC
CTTTGCTTGCTGTGTGTGCTGTATGTTTTCGCTACCAACTGTTTTTTGCC
AACAGGCAGCCATGGTGCAAGCCGAAGAGGGGATGGGAATCTGGCAGGTG
TGGGACTTGCGCGGCTACCTTCCTTTCTCAATCTTCCACAAGATAGGTGA
GTGCCGCCGGCGACACTTGGCTCCGCCGGCTGTTCCTCCCGCTGAGCAAC
CAGTTGTGTCCTTCTGTAGCGATGAACATCTCAATCTCGCGCCCTCGACA
CGTCAGGCAGTCATGAAAACCCGGGAAGCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1120:3930..6212+

>mRNA_Ecto-sp8_S_contig1120.1561.1 ID=mRNA_Ecto-sp8_S_contig1120.1561.1|Name=mRNA_Ecto-sp8_S_contig1120.1561.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1120:3930..6212+ (Ectocarpus species8 EcLAC_412)
ATGGCTGCGGTGGCCAGGAACGCATCAGTGACAACTGGGGGCGACTCTAT
CTTGTTCAGGGTGAAGCTTTTCATCATGGTGTTTCTGACGGTCGTCGACA
TGACTCTCAACAGCAGCGTGGAGCACGAAACGTTTGGCACTTGGGACGAG
ACCGGGAGGGACGGAACCGCGTTGGTGCTCATCCTTGGGTTTCAGCTCGT
GGTCCAAGTGGGAAACTTCGCTTGTCTCTTTCTTATGATGTTTGAGACTT
ACCCGTTTCGAGTCGGGCTTATGGGGATGCTGACGTCGCAATACCTGACG
GTGTACGTCATAAACGTCTTGTATTTTGTCACGACAGCCTGCGTCTACGG
CTATCGAGTGGCAGCCATGGTGCAAGCCGAAGAGGGGATGGGAATCTGGC
AGGTGTGGGACTTGCGCGGCTACCTTCCTTTCTCAATCTTCCACAAGATA
GGTGAGTGCCGCCGGCGACACTTGGCTCCGCCGGCTGTTCCTCCCGCTGA
GCAACCAGTTGTGTCCTTCTGTAGCGATGAACATCTCAATCTCGCGCCCT
CGACACGTCAGGCAGTCATGAAAACCCGGGAAGCCTAG
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