mRNA_Ecto-sp8_S_contig11197.1555.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11197.1555.1
Unique NamemRNA_Ecto-sp8_S_contig11197.1555.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11197.1555.1 vs. uniprot
Match: D7FZG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG1_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 2.250e-42
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGKLPVANLKEAGATSA 219
            MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGKLPVA+LKEAGATSA
Sbjct:    1 MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGKLPVASLKEAGATSA 73
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BLAST of mRNA_Ecto-sp8_S_contig11197.1555.1 vs. uniprot
Match: A0A1Z5K8B7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8B7_FISSO)

HSP 1 Score: 77.8 bits (190), Expect = 2.260e-17
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:   13 TTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGKLPVANLKEAG 207
            TTFWR+AGM+YL+Y +KA   MR  LKEPA++ A+A+EA GYN  V+  G+   KLPVAN+++AG
Sbjct:    7 TTFWRVAGMSYLQYINKAAGTMRSVLKEPAKTRAMAQEAYGYNAAVWEAGKQGPKLPVANIQQAG 71
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BLAST of mRNA_Ecto-sp8_S_contig11197.1555.1 vs. uniprot
Match: A0A835YQS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.910e-16
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGKLPVANLKEAG 207
            ATTFWR+AG++YLEYA+  TT +R  LKEP RS A+ R AV YNR VF  G    K PV +L +AG
Sbjct:    6 ATTFWRIAGLSYLEYAAATTTALRMGLKEPMRSKAMTRNAVSYNRAVFKDGVSGAKKPVKSLADAG 71
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BLAST of mRNA_Ecto-sp8_S_contig11197.1555.1 vs. uniprot
Match: B7G8W9_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8W9_PHATC)

HSP 1 Score: 73.9 bits (180), Expect = 3.330e-15
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    4 SQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGKLPVANLKEAGATS 216
            S  TTFWR+AGM+YL+Y +KA T MRGALKEPA+  A+ +EA  Y  + +  G+   K+PV  L ++GATS
Sbjct:   60 SPVTTFWRMAGMSYLQYVNKAATSMRGALKEPAQRKAMEQEAFAYKVSTWQDGKQSPKVPVDVLAQSGATS 130
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BLAST of mRNA_Ecto-sp8_S_contig11197.1555.1 vs. uniprot
Match: W7U8A3_9STRA (Atp synthase subunit epsilon n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U8A3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.210e-10
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVF---VGGQPQG--KLPVANLK 198
            ATT+WR+AG+TYL+Y SKA  V+R ALKEP R+  +A+E + + R  +   + GQP G  K+ V +LK
Sbjct:    5 ATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSLK 72
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BLAST of mRNA_Ecto-sp8_S_contig11197.1555.1 vs. uniprot
Match: A0A448YV42_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YV42_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.150e-9
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGKLPVANLKEAG 207
            +TT+WR+AGMTYL+Y ++A   +R  LKEP +S  LA+    YN + +  G    K  ++ L +AG
Sbjct:    5 STTYWRIAGMTYLQYVNRAAGAVRSGLKEPTKSKLLAQSEFKYNASAWESGIQGAKKEISALGQAG 70
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BLAST of mRNA_Ecto-sp8_S_contig11197.1555.1 vs. uniprot
Match: A0A1E7ER17_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ER17_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 5.150e-9
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGKLPVANLKEAG 207
            AT FWR+AGM+YL+Y ++A   +R ALKEP +S   A+    Y  + +V G    K  + +L +AG
Sbjct:    5 ATNFWRIAGMSYLQYVNRAAGSVRSALKEPMKSKLSAQGEFSYKASAWVDGTQMSKTEITSLSQAG 70
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BLAST of mRNA_Ecto-sp8_S_contig11197.1555.1 vs. uniprot
Match: A0A7S3L8J2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8J2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.810e-8
Identity = 25/61 (40.98%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   13 TTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGKLPVANL 195
            TTFWR+AG++YL+Y +KA + +RGALKEPA+S    ++   + ++ + GG    K  V  +
Sbjct:   50 TTFWRMAGLSYLQYVNKAASTIRGALKEPAKSRLAVQDTFSFKKSSWSGGVQGPKTEVTRM 110
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BLAST of mRNA_Ecto-sp8_S_contig11197.1555.1 vs. uniprot
Match: I0YYI8_COCSC (Uncharacterized protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YYI8_COCSC)

HSP 1 Score: 53.9 bits (128), Expect = 7.020e-8
Identity = 27/70 (38.57%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGKLPVANLKEAGATSA 219
            A+++WR+AGM+YL+Y++    ++R +LKEP ++ A  REAV +   V+  G+P+ K  + +L +AG   A
Sbjct:    7 ASSYWRVAGMSYLKYSNLCADMLRSSLKEPMKTKAKLREAVYFRAAVWKDGKPE-KQVITDLTDAGLEQA 75
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BLAST of mRNA_Ecto-sp8_S_contig11197.1555.1 vs. uniprot
Match: A0A444ENQ8_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444ENQ8_ENSVE)

HSP 1 Score: 53.1 bits (126), Expect = 1.110e-7
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   10 ATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQ 171
            A  FWR AGMTY+ Y++   +++RG LKEP RS A+ARE V +  + +  G+P+
Sbjct:    7 AVPFWRAAGMTYITYSNICASLVRGCLKEPHRSEAVAREKVHFTVSKWADGKPE 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11197.1555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FZG1_ECTSI2.250e-4298.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5K8B7_FISSO2.260e-1756.92Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A835YQS1_9STRA1.910e-1657.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B7G8W9_PHATC3.330e-1552.11Predicted protein n=4 Tax=Phaeodactylum tricornutu... [more]
W7U8A3_9STRA3.210e-1048.53Atp synthase subunit epsilon n=2 Tax=Monodopsidace... [more]
A0A448YV42_9STRA5.150e-940.91Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7ER17_9STRA5.150e-940.91Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S3L8J2_9STRA1.810e-840.98Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
I0YYI8_COCSC7.020e-838.57Uncharacterized protein n=2 Tax=Coccomyxa TaxID=41... [more]
A0A444ENQ8_ENSVE1.110e-746.30Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11197contigEcto-sp8_S_contig11197:1780..4294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size222
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionATPase, F1 complex, epsilon subunit, mitochondrial
Ec32 orthologEc-19_003180.1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143200.0587506-CDS-Ecto-sp8_S_contig11197:1779..18301681143200.0587506-CDS-Ecto-sp8_S_contig11197:1779..1830Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11197 1780..1830 +
1681143200.0694034-CDS-Ecto-sp8_S_contig11197:3137..32641681143200.0694034-CDS-Ecto-sp8_S_contig11197:3137..3264Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11197 3138..3264 +
1681143200.078758-CDS-Ecto-sp8_S_contig11197:4250..42941681143200.078758-CDS-Ecto-sp8_S_contig11197:4250..4294Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11197 4251..4294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11197.1555.1prot_Ecto-sp8_S_contig11197.1555.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11197 1780..4294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11197.1555.1

>prot_Ecto-sp8_S_contig11197.1555.1 ID=prot_Ecto-sp8_S_contig11197.1555.1|Name=mRNA_Ecto-sp8_S_contig11197.1555.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=74bp
MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNV
FVGGQPQGKLPVANLKEAGATSA*
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mRNA from alignment at Ecto-sp8_S_contig11197:1780..4294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11197.1555.1 ID=mRNA_Ecto-sp8_S_contig11197.1555.1|Name=mRNA_Ecto-sp8_S_contig11197.1555.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2515bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11197:1780..4294+ (Ectocarpus species8 EcLAC_412)
ATGTCTCAGGCAACGACGTTCTGGCGGTTGGCGGGCATGACGTACCTTGA
GGTGAGAAGACCAAAGCAAGCAGAGAAAGCTTGATCGAAACGTGCAAGAA
AGAAGAACGACGTTTCTGCACGCACGGAGAAGAGTGTCGCACAGAACTCG
CCGCGCCCACTAAATCAGCAGGGCAGCAGCAAGGGCGGGTGGGGGCCGAA
CAGGAGACGCGGCGACTCTCAAATGGCGCAACAAGAGAAGGAACTCGTGG
TTGCATCGGTGTTGCGCCTATCTCTCTCTAGTGTTTACCCGCGAGTACCC
CCTATCAGCTTGGTATCATAGCATCACGGCGAACCTGATCTTGCAATTTC
TGCCCTCTCGATGTAGTAGGCATTTTGCCGATCTGCTGCCAATCCTTGAT
CATCGGTAGTCTTGCAAGCTGTTCGTGGTCATGGGAACATGGGAACCAAG
AGAGCCCAGACCCGTTCCAGATTGTGTCGGGCCAAAGGAAAAACACTCCC
AATCGCACCCGCCTCCTGTTTCTAAACGCAACAAGCGGGCCTCTGCTTTG
CATCTTGCACGAAGCCTCTCTTTCCGTGTGCACCGTATGTTCTGCTCGAG
TGCCAGCGGCCAGCGGCGGTCGACGAAACCTACAGCAGTCTACCTACAGT
AGTAGCCGTCGGTGAATGCGTGAGATGGATTTTTGCTGCTCGTCGGCTGT
GGCTGTGGCAGGACAGTGTTGTGCCATCCATGTCCAGAGGTAGATTCAAG
AGGATTCCTACAGTACAGACATGCACAATGAGTTATTTGCGACAGGAAAT
AGTAGTATAATAGTGTTTCCACCCAAACCAGCGGGACGTCAATTTCGGTA
GGTAGTGTCAGGGAGAGCGATCCGAACTCTGCCCGTCTTCCCCTCCCTTG
GCATTTACACGCTCTCCCTTCGTCCAAGGCCAGCCGTACGAAAAGACTTG
GCACCCGGAACAGAAACGACTTGAGACATGAAACCGTTTACTGCTGTACA
TTTGCATCTATTTAGACGCCACCCTCCTCCCCCCCTCGTCGGACCTCTCG
ATGTCGATCAAGTAAACATGTTTGGATGAAGCATACAATCGATTAAGTAG
GGTTAGGGAAAAGGGTCTCTGCGTCTCCCCTCCCTGTTTTTTTATTTTCT
TTTATTTTCTTTTATTGTGTCCTCCTAAACTTATTAGTCTCGCGAAGTCG
GTCCGCATCCCTACGTGTGCCTCTACACACTAACGCCCTACTCCCCTCAC
CCCCCAGACCTCAACCTCCCCTACCTCGATCACAGCATCAACTATTATAT
ACCATGCCAACTCTTCTTCTCCGCGACACCATGCCTTGATTTTTTTGTCC
CGCCGCAGTACGCCAGCAAGGCAACCACGGTCATGCGCGGCGCCCTCAAG
GAGCCCGCCCGCAGCACGGCCTTGGCGCGGGAAGCGGTGGGGTACAACCG
CAACGTCTTCGTCGGCGGCCAGCCGCAGGGCAAACGTGAGTGTTTATTCT
TCTTTTTCTTCAAATATCACGACAAATCCAGCTCTGTCCATACACAAGGG
TCTAATATAAAATGGTAATAAACTATAGCGTTTGCCGGGTGCTACCTGTG
CTACAACGATTCCCCAACCACAAAACAGCGATGTATTCCCTGTTGGTAGC
AGGCTCAACAAGATAGCTCGGTGGCCATCTTGTGCATCGTGCTATCTGTG
TTATTCCAGGAAGGTGTGTAGGAATATGTTTTGAGTGTGCGTCGTGACGC
GGAGGGGGCGGGGGGTACTCATAGTCGTGAATGCCGTCGTCGTTATACTA
TTGATTGACCTCGCATCCCTACAAAGCCGGGACGGAGCACGCCGGGTTCT
CACCGGACCAGGCTCTCACATCACCAAGCGCGAATTTCGCGCCGTGAGAT
ATTCGGCGAGTCGCATTGAGGGTGGGCTGCATCCTGCTAAGAGGGGGGCG
GGACATACTCATGTTTTGCATCCCTTAGCGGTTAGACCATGGAGGCGACG
GCGGGGAGGAGAGAAAAGGGAGACGGCAGGAGACTGGGAAGAGAATCGGG
CACGACTTAATGTTGCAAGCCCCGTATTTCCTTACGGATGTCGTGCAGAA
CGAATGGCATGCCCGGCCCACGTATCTCAAACTCAAAACTCTTGTGCATA
CTACCCCCATCATCGGGCTCACGGGAAAGTCTGCTTTGAGAGGGGGGGGG
GGTTGCCTCAGCACGTACCTTTGCCATGCACTCGGTAGAACCCGACTGCT
ACCGTTTTTTTCATTCGCAAAACGACCCACCCAACTTGTTGCAAAGGAAT
GAGCAGGAGGAGGAGTTTGTGACCGGCCCGCGAATCCCCCGTGAACGTTT
TCTCTTGTTGGAATGACTTTCGTTCGACCTCGATCGTTGTGTTGCTCTGA
TTCCACCCTTGCTTGTGTTTCTGTTCCTCTGATTTTATGTTGGTTTGATT
CGCTCGTCTGTCTCCCCGCAGTGCCGGTGGCCAATTTGAAGGAGGCTGGG
GCAACCTCGGCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11197:1780..4294+

>mRNA_Ecto-sp8_S_contig11197.1555.1 ID=mRNA_Ecto-sp8_S_contig11197.1555.1|Name=mRNA_Ecto-sp8_S_contig11197.1555.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11197:1780..4294+ (Ectocarpus species8 EcLAC_412)
ATGTCTCAGGCAACGACGTTCTGGCGGTTGGCGGGCATGACGTACCTTGA
GTACGCCAGCAAGGCAACCACGGTCATGCGCGGCGCCCTCAAGGAGCCCG
CCCGCAGCACGGCCTTGGCGCGGGAAGCGGTGGGGTACAACCGCAACGTC
TTCGTCGGCGGCCAGCCGCAGGGCAAACTGCCGGTGGCCAATTTGAAGGA
GGCTGGGGCAACCTCGGCGTAG
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