mRNA_Ecto-sp8_S_contig11196.1554.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: D7FY97_ECTSI (Short chain dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY97_ECTSI) HSP 1 Score: 150 bits (379), Expect = 1.880e-44 Identity = 83/97 (85.57%), Postives = 87/97 (89.69%), Query Frame = 1
Query: 1 MVVPVIFQHSYVHNSQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVFKAVPFVGITVDTIDDILNI 291
MVV VIFQHSYVH SQLVIVARREAK DEVAEEIKSAG VAVVVG VSKEANCKKMVD A+E FGGLHVAFN AGVFKAVPFVGITVDTI+D+ +I
Sbjct: 1 MVVLVIFQHSYVHISQLVIVARREAKRDEVAEEIKSAG--VAVVVGGVSKEANCKKMVDAAMEKFGGLHVAFNNAGVFKAVPFVGITVDTIEDLPDI 95
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI) HSP 1 Score: 133 bits (335), Expect = 9.200e-36 Identity = 69/88 (78.41%), Postives = 75/88 (85.23%), Query Frame = 1
Query: 43 SQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVFKAVPFVGITVDTIDDILNINVSPL 306
+++VI ARRE KLDEVA EIKSAGG+VAVVVG VSKE +CKKMVDTAIE FGGLHVAFN AGVFK VPFV IT DTIDDILN NV +
Sbjct: 32 AKVVIAARREVKLDEVAAEIKSAGGEVAVVVGDVSKEMDCKKMVDTAIEKFGGLHVAFNNAGVFKTVPFVDITEDTIDDILNTNVKSI 119
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: D8LQS3_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQS3_ECTSI) HSP 1 Score: 130 bits (326), Expect = 1.950e-34 Identity = 66/88 (75.00%), Postives = 75/88 (85.23%), Query Frame = 1
Query: 43 SQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVFKAVPFVGITVDTIDDILNINVSPL 306
+++VI ARRE KL EVA+EIK+AGGDVA+ VG SKEA+CKKMVDTAIE FGGLHVAFN AGVF+AVPF IT DTIDD+LNINV L
Sbjct: 30 AKVVIAARREDKLKEVADEIKAAGGDVALAVGDASKEADCKKMVDTAIEKFGGLHVAFNNAGVFRAVPFADITEDTIDDLLNINVKSL 117
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: A0A6N7JIV0_9PROT (Glucose 1-dehydrogenase n=2 Tax=Azospirillaceae TaxID=2829815 RepID=A0A6N7JIV0_9PROT) HSP 1 Score: 72.4 bits (176), Expect = 2.220e-12 Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 43 SQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVF-KAVPFVGITVDTIDDILNINVS 300
++LV+VARREA L E+A EI +AG + A+V G V++EA V A+E FGGL +AFN AG ++ P G++V+ +L++N++
Sbjct: 31 ARLVLVARREAALAELAAEISAAGSEAALVPGDVAEEATAAAAVKMAVERFGGLDIAFNNAGTMGESAPLTGLSVENWRYVLDVNLT 117
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: A0A2U1WBI2_9PROT (Short-chain dehydrogenase n=6 Tax=cellular organisms TaxID=131567 RepID=A0A2U1WBI2_9PROT) HSP 1 Score: 70.5 bits (171), Expect = 1.150e-11 Identity = 37/89 (41.57%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 37 HNSQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVFKA-VPFVGITVDTIDDILNINVS 300
H ++LV+VARR +L+++A+EI+S GGD V G+V+ + V+TAI FGGL VAFN AG A VP +T + ++++ N++
Sbjct: 29 HGAKLVLVARRRDELEQLADEIRSIGGDAVAVAGTVADADVARSAVETAIRRFGGLDVAFNNAGTTGAQVPLPDMTAEMWHEVIDTNLT 117
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: D8LQS5_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS5_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 1.300e-11 Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1
Query: 169 MVDTAIENFGGLHVAFNYAGVFKAVPFVGITVDTIDDILNINVSPL 306
MVDTAI+ FGGLHVAFN AGV+++ PF I DTIDD+LNINV L
Sbjct: 1 MVDTAIQKFGGLHVAFNNAGVYRSAPFADIMEDTIDDLLNINVKSL 46
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: A0A2A4R0P4_9HYPH (Short-chain dehydrogenase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2A4R0P4_9HYPH) HSP 1 Score: 68.9 bits (167), Expect = 4.250e-11 Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 1
Query: 43 SQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAG 228
++L++ ARR+ +LDE+ +I++AGG + G + EA K++V+TA+ NFGGLH+AFN AG
Sbjct: 31 AKLIVSARRQEQLDELVGKIENAGGTATAIAGDIKDEATAKELVETALSNFGGLHIAFNNAG 92
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: UPI0014210B8C (SDR family oxidoreductase n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014210B8C) HSP 1 Score: 68.6 bits (166), Expect = 5.820e-11 Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 43 SQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVFKAV-PFVGITVDTIDDILNINVS 300
+++V ARR+ +LD++ EI++AGG+ V G V EA K +VDTA+ FGGL +AFN AG+ A+ P +T+ D L N++
Sbjct: 31 AKVVAAARRQGELDKLVAEIENAGGEAVAVAGDVKDEALAKALVDTAVNRFGGLDIAFNNAGILGAMGPVSEMTLSDWRDTLETNLT 117
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: UPI001660156E (SDR family oxidoreductase n=1 Tax=Pseudaminobacter soli TaxID=2831468 RepID=UPI001660156E) HSP 1 Score: 67.0 bits (162), Expect = 2.220e-10 Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 43 SQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVFKAVPFV-GITVDTIDDILNINVS 300
+ +V+ RR +L +V EIK AGG V G V E++ KK+V+TAIE FGGL +AFN G A+ V +T+D DD L N++
Sbjct: 31 ASVVLSGRRSEELADVVAEIKGAGGSAVSVTGDVRAESHAKKLVETAIEEFGGLDIAFNNVGSSGAMGAVTDLTLDGWDDTLRTNLT 117
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: A0A1G5MSZ9_AFIMA (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=1 Tax=Afifella marina DSM 2698 TaxID=1120955 RepID=A0A1G5MSZ9_AFIMA) HSP 1 Score: 66.6 bits (161), Expect = 2.880e-10 Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = 1
Query: 43 SQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVFKAV-PFVGITVDTIDDILNINVS 300
+++V+ ARR LDE+A EI+S GG+VAVV G V+ E + ++ A + FG +HVAFN AGV + P +T D + +L+ N++
Sbjct: 31 ARVVVCARRSGPLDELAAEIRSEGGEVAVVAGDVAHERTHRACIEVAEKTFGAVHVAFNNAGVVGEMRPLSELTRDEWEHVLHTNLT 117 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig11196.1554.1 >prot_Ecto-sp8_S_contig11196.1554.1 ID=prot_Ecto-sp8_S_contig11196.1554.1|Name=mRNA_Ecto-sp8_S_contig11196.1554.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=106bp MVVPVIFQHSYVHNSQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKback to top mRNA from alignment at Ecto-sp8_S_contig11196:3593..4932+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig11196.1554.1 ID=mRNA_Ecto-sp8_S_contig11196.1554.1|Name=mRNA_Ecto-sp8_S_contig11196.1554.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1340bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11196:3593..4932+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11196:3593..4932+ >mRNA_Ecto-sp8_S_contig11196.1554.1 ID=mRNA_Ecto-sp8_S_contig11196.1554.1|Name=mRNA_Ecto-sp8_S_contig11196.1554.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11196:3593..4932+ (Ectocarpus species8 EcLAC_412)back to top |