mRNA_Ecto-sp8_S_contig11196.1554.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11196.1554.1
Unique NamemRNA_Ecto-sp8_S_contig11196.1554.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: D7FY97_ECTSI (Short chain dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY97_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.880e-44
Identity = 83/97 (85.57%), Postives = 87/97 (89.69%), Query Frame = 1
Query:    1 MVVPVIFQHSYVHNSQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVFKAVPFVGITVDTIDDILNI 291
            MVV VIFQHSYVH SQLVIVARREAK DEVAEEIKSAG  VAVVVG VSKEANCKKMVD A+E FGGLHVAFN AGVFKAVPFVGITVDTI+D+ +I
Sbjct:    1 MVVLVIFQHSYVHISQLVIVARREAKRDEVAEEIKSAG--VAVVVGGVSKEANCKKMVDAAMEKFGGLHVAFNNAGVFKAVPFVGITVDTIEDLPDI 95          
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 9.200e-36
Identity = 69/88 (78.41%), Postives = 75/88 (85.23%), Query Frame = 1
Query:   43 SQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVFKAVPFVGITVDTIDDILNINVSPL 306
            +++VI ARRE KLDEVA EIKSAGG+VAVVVG VSKE +CKKMVDTAIE FGGLHVAFN AGVFK VPFV IT DTIDDILN NV  +
Sbjct:   32 AKVVIAARREVKLDEVAAEIKSAGGEVAVVVGDVSKEMDCKKMVDTAIEKFGGLHVAFNNAGVFKTVPFVDITEDTIDDILNTNVKSI 119          
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: D8LQS3_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQS3_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.950e-34
Identity = 66/88 (75.00%), Postives = 75/88 (85.23%), Query Frame = 1
Query:   43 SQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVFKAVPFVGITVDTIDDILNINVSPL 306
            +++VI ARRE KL EVA+EIK+AGGDVA+ VG  SKEA+CKKMVDTAIE FGGLHVAFN AGVF+AVPF  IT DTIDD+LNINV  L
Sbjct:   30 AKVVIAARREDKLKEVADEIKAAGGDVALAVGDASKEADCKKMVDTAIEKFGGLHVAFNNAGVFRAVPFADITEDTIDDLLNINVKSL 117          
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: A0A6N7JIV0_9PROT (Glucose 1-dehydrogenase n=2 Tax=Azospirillaceae TaxID=2829815 RepID=A0A6N7JIV0_9PROT)

HSP 1 Score: 72.4 bits (176), Expect = 2.220e-12
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   43 SQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVF-KAVPFVGITVDTIDDILNINVS 300
            ++LV+VARREA L E+A EI +AG + A+V G V++EA     V  A+E FGGL +AFN AG   ++ P  G++V+    +L++N++
Sbjct:   31 ARLVLVARREAALAELAAEISAAGSEAALVPGDVAEEATAAAAVKMAVERFGGLDIAFNNAGTMGESAPLTGLSVENWRYVLDVNLT 117          
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: A0A2U1WBI2_9PROT (Short-chain dehydrogenase n=6 Tax=cellular organisms TaxID=131567 RepID=A0A2U1WBI2_9PROT)

HSP 1 Score: 70.5 bits (171), Expect = 1.150e-11
Identity = 37/89 (41.57%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   37 HNSQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVFKA-VPFVGITVDTIDDILNINVS 300
            H ++LV+VARR  +L+++A+EI+S GGD   V G+V+     +  V+TAI  FGGL VAFN AG   A VP   +T +   ++++ N++
Sbjct:   29 HGAKLVLVARRRDELEQLADEIRSIGGDAVAVAGTVADADVARSAVETAIRRFGGLDVAFNNAGTTGAQVPLPDMTAEMWHEVIDTNLT 117          
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: D8LQS5_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS5_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.300e-11
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1
Query:  169 MVDTAIENFGGLHVAFNYAGVFKAVPFVGITVDTIDDILNINVSPL 306
            MVDTAI+ FGGLHVAFN AGV+++ PF  I  DTIDD+LNINV  L
Sbjct:    1 MVDTAIQKFGGLHVAFNNAGVYRSAPFADIMEDTIDDLLNINVKSL 46          
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: A0A2A4R0P4_9HYPH (Short-chain dehydrogenase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2A4R0P4_9HYPH)

HSP 1 Score: 68.9 bits (167), Expect = 4.250e-11
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   43 SQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAG 228
            ++L++ ARR+ +LDE+  +I++AGG    + G +  EA  K++V+TA+ NFGGLH+AFN AG
Sbjct:   31 AKLIVSARRQEQLDELVGKIENAGGTATAIAGDIKDEATAKELVETALSNFGGLHIAFNNAG 92          
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: UPI0014210B8C (SDR family oxidoreductase n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014210B8C)

HSP 1 Score: 68.6 bits (166), Expect = 5.820e-11
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   43 SQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVFKAV-PFVGITVDTIDDILNINVS 300
            +++V  ARR+ +LD++  EI++AGG+   V G V  EA  K +VDTA+  FGGL +AFN AG+  A+ P   +T+    D L  N++
Sbjct:   31 AKVVAAARRQGELDKLVAEIENAGGEAVAVAGDVKDEALAKALVDTAVNRFGGLDIAFNNAGILGAMGPVSEMTLSDWRDTLETNLT 117          
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: UPI001660156E (SDR family oxidoreductase n=1 Tax=Pseudaminobacter soli TaxID=2831468 RepID=UPI001660156E)

HSP 1 Score: 67.0 bits (162), Expect = 2.220e-10
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   43 SQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVFKAVPFV-GITVDTIDDILNINVS 300
            + +V+  RR  +L +V  EIK AGG    V G V  E++ KK+V+TAIE FGGL +AFN  G   A+  V  +T+D  DD L  N++
Sbjct:   31 ASVVLSGRRSEELADVVAEIKGAGGSAVSVTGDVRAESHAKKLVETAIEEFGGLDIAFNNVGSSGAMGAVTDLTLDGWDDTLRTNLT 117          
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Match: A0A1G5MSZ9_AFIMA (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=1 Tax=Afifella marina DSM 2698 TaxID=1120955 RepID=A0A1G5MSZ9_AFIMA)

HSP 1 Score: 66.6 bits (161), Expect = 2.880e-10
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   43 SQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSKEANCKKMVDTAIENFGGLHVAFNYAGVFKAV-PFVGITVDTIDDILNINVS 300
            +++V+ ARR   LDE+A EI+S GG+VAVV G V+ E   +  ++ A + FG +HVAFN AGV   + P   +T D  + +L+ N++
Sbjct:   31 ARVVVCARRSGPLDELAAEIRSEGGEVAVVAGDVAHERTHRACIEVAEKTFGAVHVAFNNAGVVGEMRPLSELTRDEWEHVLHTNLT 117          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11196.1554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY97_ECTSI1.880e-4485.57Short chain dehydrogenase n=1 Tax=Ectocarpus silic... [more]
D8LQS1_ECTSI9.200e-3678.41Short-chain dehydrogenase/reductase SDR n=1 Tax=Ec... [more]
D8LQS3_ECTSI1.950e-3475.00Short-chain dehydrogenase/reductase SDR n=2 Tax=Ec... [more]
A0A6N7JIV0_9PROT2.220e-1243.68Glucose 1-dehydrogenase n=2 Tax=Azospirillaceae Ta... [more]
A0A2U1WBI2_9PROT1.150e-1141.57Short-chain dehydrogenase n=6 Tax=cellular organis... [more]
D8LQS5_ECTSI1.300e-1169.57Short-chain dehydrogenase/reductase SDR n=1 Tax=Ec... [more]
A0A2A4R0P4_9HYPH4.250e-1146.77Short-chain dehydrogenase n=1 Tax=Hyphomicrobiales... [more]
UPI0014210B8C5.820e-1141.38SDR family oxidoreductase n=1 Tax=Pelagibius litor... [more]
UPI001660156E2.220e-1043.68SDR family oxidoreductase n=1 Tax=Pseudaminobacter... [more]
A0A1G5MSZ9_AFIMA2.880e-1041.38NAD(P)-dependent dehydrogenase, short-chain alcoho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11196contigEcto-sp8_S_contig11196:3593..4932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score134.8
Seed ortholog evalue2.3e-29
Seed eggNOG ortholog2880.D8LQS1
Model size475
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG0725@2759
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-24_003280.1
Cds size318
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143199.9899528-CDS-Ecto-sp8_S_contig11196:3592..37421681143199.9899528-CDS-Ecto-sp8_S_contig11196:3592..3742Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11196 3593..3742 +
1681143200.0109246-CDS-Ecto-sp8_S_contig11196:4607..47751681143200.0109246-CDS-Ecto-sp8_S_contig11196:4607..4775Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11196 4608..4775 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143200.0294898-UTR-Ecto-sp8_S_contig11196:4775..49321681143200.0294898-UTR-Ecto-sp8_S_contig11196:4775..4932Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11196 4776..4932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11196.1554.1prot_Ecto-sp8_S_contig11196.1554.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11196 3593..4775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11196.1554.1

>prot_Ecto-sp8_S_contig11196.1554.1 ID=prot_Ecto-sp8_S_contig11196.1554.1|Name=mRNA_Ecto-sp8_S_contig11196.1554.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=106bp
MVVPVIFQHSYVHNSQLVIVARREAKLDEVAEEIKSAGGDVAVVVGSVSK
EANCKKMVDTAIENFGGLHVAFNYAGVFKAVPFVGITVDTIDDILNINVS
PLPGA*
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mRNA from alignment at Ecto-sp8_S_contig11196:3593..4932+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11196.1554.1 ID=mRNA_Ecto-sp8_S_contig11196.1554.1|Name=mRNA_Ecto-sp8_S_contig11196.1554.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1340bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11196:3593..4932+ (Ectocarpus species8 EcLAC_412)
ATGGTCGTACCGGTCATTTTCCAACACTCGTACGTACACAATTCACAGCT GGTGATTGTAGCGAGGCGCGAGGCCAAGCTGGACGAGGTGGCCGAGGAAA TCAAGTCGGCCGGGGGAGACGTGGCGGTTGTGGTGGGCAGCGTCTCCAAG GTGCGCACGACAGACAGACTGAGAACTCTTGTTGAGCATGCATAGGCATG TAAGGTGGGTCTCCTACTCTTTCTACAGTTTTCCTTAACCGCCCATGGGG CACCCATTGGCTGCCCATGGGGCACCTATTGGCTGCCCATGGGCACCCGA GTGCCCATGGGGAATGCCCACGGGGCAGAACATGGGTAACCGGCGGGCAG CCAGCCCATGGATAGCCCATGAACCGTCAATGAGTGCCCTCCACCCGGAA CCGGGTGCTCCTAAACAATAGATTATCTGCTTTGGAAAAGGCATTGTAAC GGTTAACAACCCCAAAGCTAACCCTAACCCCAAGCCCACACTATACGTGC TAGGTTGGGGTTGGGTGGCTAAGTTCTAGGTTGATGTATCGGTGGCTATG TTCTAGGCTACATGCCGGTGGCGAACTTCTAGGTTGAAGTGCCCACCGTG GGCACTTCGTAGGCGATCATGTGCTGCTCATGGGCCCACCCATGGGCAGT CCATGGGTAGTCCATGAAGTGCCCGTGGGCGGTTTAGCAAAACTGCCTGT AGTGTAGGAGAATGTGGAAGGCAGACTATGACGCGAGCCATGGAGCCGTT TCATCGTTTCATGACGCACACTCCAGGTGAGAAAACTGTTCTGTTTTCAT ACACTACGCAATAATGTTGAACTTCGAGTAAGTCTCTCGTTTCGCGTCGC AACACGTGCATCCAGCTTGTTTTTCGCCAACGTTTTCTGAAAGTACACAA GAGGGCCCCGCGTGTTACATATGTAGCGGGCGCGGCCAATCGTCCCGCTC CCATGTGTCACCCGCATTGATGCCAAACTGCTACATTTACTGCTCCCCGT CCCGACGCACCACAGGAAGCGAACTGCAAGAAAATGGTGGACACAGCGAT CGAAAATTTCGGCGGGCTACACGTGGCCTTCAACTACGCGGGCGTTTTCA AGGCGGTCCCTTTTGTGGGCATCACCGTAGATACCATCGATGACATCCTG AACATCAACGTCAGTCCATTGCCTGGTGCTTGAAGTATCACCGTGTGTGT GCGAGAAACATTTGTGTCCCGCAGCACGGGTCTGTCACAATTTCTACAGT TTCGCAAAAACGCCCATTGGGGGACACCCATGGGTCGCGCCCATGGGTCA CCCATGGGTCACATTCTCCCACATACCAAGCGGAGCCCCC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11196:3593..4932+

>mRNA_Ecto-sp8_S_contig11196.1554.1 ID=mRNA_Ecto-sp8_S_contig11196.1554.1|Name=mRNA_Ecto-sp8_S_contig11196.1554.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11196:3593..4932+ (Ectocarpus species8 EcLAC_412)
ATGGTCGTACCGGTCATTTTCCAACACTCGTACGTACACAATTCACAGCT
GGTGATTGTAGCGAGGCGCGAGGCCAAGCTGGACGAGGTGGCCGAGGAAA
TCAAGTCGGCCGGGGGAGACGTGGCGGTTGTGGTGGGCAGCGTCTCCAAG
GAAGCGAACTGCAAGAAAATGGTGGACACAGCGATCGAAAATTTCGGCGG
GCTACACGTGGCCTTCAACTACGCGGGCGTTTTCAAGGCGGTCCCTTTTG
TGGGCATCACCGTAGATACCATCGATGACATCCTGAACATCAACGTCAGT
CCATTGCCTGGTGCTTGA
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