mRNA_Ecto-sp8_S_contig11192.1552.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11192.1552.1
Unique NamemRNA_Ecto-sp8_S_contig11192.1552.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11192.1552.1 vs. uniprot
Match: D8LDR5_ECTSI (Endo-1,3-beta-glucanase, family GH16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR5_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 3.580e-41
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1 
Query:  502 RFYTSSKVMTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRNNFTEAVNNLA 720
            RFYTSSKV TKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRNNFTE+VNNLA
Sbjct:  100 RFYTSSKVTTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRNNFTESVNNLA 172
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11192.1552.1 vs. uniprot
Match: A0A6L8AS08_9GAMM (Glycoside hydrolase family 16 protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8AS08_9GAMM)

HSP 1 Score: 98.2 bits (243), Expect = 1.560e-20
Identity = 41/61 (67.21%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:  508 YTSSKVMTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRN 690
            +TS+++ T+++F+FRYGR EAR+RLP GG+G+WPAFW+MPQD+AYG W ASGEIDI E+RN
Sbjct:  148 FTSARINTRDRFAFRYGRVEARIRLP-GGRGVWPAFWLMPQDSAYGPWPASGEIDILEARN 207
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11192.1552.1 vs. uniprot
Match: A0A524GMY5_9GAMM (Glycoside hydrolase family 16 protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A524GMY5_9GAMM)

HSP 1 Score: 97.4 bits (241), Expect = 1.990e-20
Identity = 41/61 (67.21%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:  508 YTSSKVMTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRN 690
            YTS ++ T+++F+FRYGR EAR+RLP GGQGLWPAFW++PQD+ YG WAASGEID+ E+ N
Sbjct:  126 YTSGRINTRDRFAFRYGRIEARMRLP-GGQGLWPAFWLLPQDDVYGAWAASGEIDVMEAVN 185
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11192.1552.1 vs. uniprot
Match: A0A6L8EF78_9GAMM (Glycoside hydrolase family 16 protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EF78_9GAMM)

HSP 1 Score: 97.1 bits (240), Expect = 2.140e-20
Identity = 42/61 (68.85%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:  508 YTSSKVMTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRN 690
            +TS+++ T+++F+FRYGR EAR+RLP  GQGLWPAFW+MPQ+NAYG WAASGEIDI E+ N
Sbjct:  108 FTSARINTRDRFAFRYGRIEARIRLP-AGQGLWPAFWLMPQENAYGGWAASGEIDIMEAVN 167
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11192.1552.1 vs. uniprot
Match: A0YDK3_9GAMM (Beta-glucanase/Beta-glucan synthetase n=1 Tax=marine gamma proteobacterium HTCC2143 TaxID=247633 RepID=A0YDK3_9GAMM)

HSP 1 Score: 97.1 bits (240), Expect = 3.370e-20
Identity = 41/61 (67.21%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:  508 YTSSKVMTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRN 690
            YTS+++ T+++F+FRYGR EAR+RLP  GQGLWPAFW++PQD+AYG WAASGEID+ E+ N
Sbjct:  138 YTSARINTRDRFAFRYGRIEARIRLP-AGQGLWPAFWLLPQDDAYGTWAASGEIDVMEAVN 197
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11192.1552.1 vs. uniprot
Match: A0A6L8B8Q2_9PROT (Glycoside hydrolase family 16 protein n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6L8B8Q2_9PROT)

HSP 1 Score: 96.7 bits (239), Expect = 5.100e-20
Identity = 42/61 (68.85%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:  508 YTSSKVMTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRN 690
            YTS+++ T+++F+FRYGR EARLRLP GGQGLWPAFW++PQ++ YG WAASGEIDI E+ N
Sbjct:  145 YTSARLHTRSRFAFRYGRIEARLRLP-GGQGLWPAFWLLPQEDTYGTWAASGEIDIMEAIN 204
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11192.1552.1 vs. uniprot
Match: A0A7Y1TFS6_9GAMM (Glycoside hydrolase family 16 protein n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y1TFS6_9GAMM)

HSP 1 Score: 95.9 bits (237), Expect = 8.140e-20
Identity = 40/61 (65.57%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:  508 YTSSKVMTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRN 690
            +TS+++ T+++F+FRYGR EAR+RLP GGQGLWPAFW++PQD+ YG WAASGEID+ E+ N
Sbjct:  132 FTSARINTRDRFAFRYGRIEARMRLP-GGQGLWPAFWLLPQDDTYGGWAASGEIDVMEAVN 191
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11192.1552.1 vs. uniprot
Match: A0A7Y2U344_9GAMM (Glycoside hydrolase family 16 protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2U344_9GAMM)

HSP 1 Score: 95.1 bits (235), Expect = 1.710e-19
Identity = 41/61 (67.21%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:  508 YTSSKVMTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRN 690
            YTS+++ T+++F+F YGR EAR+RLP GGQGLWPAFW++PQD AYG WAASGEID+ E+ N
Sbjct:  138 YTSARINTRDRFAFAYGRIEARIRLP-GGQGLWPAFWLLPQDFAYGGWAASGEIDVMEAVN 197
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11192.1552.1 vs. uniprot
Match: UPI0013ED0B97 (glycoside hydrolase family 16 protein n=1 Tax=Thioalkalivibrio sp. XN8 TaxID=2712863 RepID=UPI0013ED0B97)

HSP 1 Score: 95.1 bits (235), Expect = 1.730e-19
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:  508 YTSSKVMTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRN 690
            YTS+++ T+++F+FRYGR EAR+RLP GGQGLWPAFWM+ QD+ YG WAASGEIDI E  N
Sbjct:  139 YTSARINTRDRFAFRYGRFEARMRLP-GGQGLWPAFWMLAQDSPYGTWAASGEIDIMEGVN 198
[Close]
BLAST of mRNA_Ecto-sp8_S_contig11192.1552.1 vs. uniprot
Match: A0A6B1AUS2_9GAMM (Family 16 glycosylhydrolase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6B1AUS2_9GAMM)

HSP 1 Score: 95.1 bits (235), Expect = 4.180e-19
Identity = 40/61 (65.57%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:  508 YTSSKVMTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRN 690
            +TS+++ T+++F+FRYGR EAR+RLP  GQG+WPAFW++PQ+NAYG WAASGEIDI E+ N
Sbjct:  217 FTSARINTRDRFAFRYGRIEARIRLP-AGQGIWPAFWLLPQENAYGGWAASGEIDIMEAVN 276
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11192.1552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDR5_ECTSI3.580e-4197.26Endo-1,3-beta-glucanase, family GH16 n=1 Tax=Ectoc... [more]
A0A6L8AS08_9GAMM1.560e-2067.21Glycoside hydrolase family 16 protein n=2 Tax=Gamm... [more]
A0A524GMY5_9GAMM1.990e-2067.21Glycoside hydrolase family 16 protein n=1 Tax=Chro... [more]
A0A6L8EF78_9GAMM2.140e-2068.85Glycoside hydrolase family 16 protein n=1 Tax=Gamm... [more]
A0YDK3_9GAMM3.370e-2067.21Beta-glucanase/Beta-glucan synthetase n=1 Tax=mari... [more]
A0A6L8B8Q2_9PROT5.100e-2068.85Glycoside hydrolase family 16 protein n=2 Tax=Prot... [more]
A0A7Y1TFS6_9GAMM8.140e-2065.57Glycoside hydrolase family 16 protein n=1 Tax=Woes... [more]
A0A7Y2U344_9GAMM1.710e-1967.21Glycoside hydrolase family 16 protein n=1 Tax=Xant... [more]
UPI0013ED0B971.730e-1968.85glycoside hydrolase family 16 protein n=1 Tax=Thio... [more]
A0A6B1AUS2_9GAMM4.180e-1965.57Family 16 glycosylhydrolase n=1 Tax=Gammaproteobac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11192contigEcto-sp8_S_contig11192:5042..6558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score137.5
Seed ortholog evalue2.2e-30
Seed eggNOG ortholog2880.D8LDR5
Model size720
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Glycosyl hydrolases family 16
EggNOG OGs2S1W9@2759,COG2273@1
Cds size195
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143199.9084308-UTR-Ecto-sp8_S_contig11192:5041..55661681143199.9084308-UTR-Ecto-sp8_S_contig11192:5041..5566Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig11192 5042..5566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143199.9218888-CDS-Ecto-sp8_S_contig11192:5566..56381681143199.9218888-CDS-Ecto-sp8_S_contig11192:5566..5638Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11192 5567..5638 +
1681143199.9316711-CDS-Ecto-sp8_S_contig11192:6435..65581681143199.9316711-CDS-Ecto-sp8_S_contig11192:6435..6558Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11192 6436..6558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11192.1552.1prot_Ecto-sp8_S_contig11192.1552.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11192 5567..6558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11192.1552.1

>prot_Ecto-sp8_S_contig11192.1552.1 ID=prot_Ecto-sp8_S_contig11192.1552.1|Name=mRNA_Ecto-sp8_S_contig11192.1552.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=65bp
MTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDI
FESRNNFTEAVNNLA
back to top

mRNA from alignment at Ecto-sp8_S_contig11192:5042..6558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11192.1552.1 ID=mRNA_Ecto-sp8_S_contig11192.1552.1|Name=mRNA_Ecto-sp8_S_contig11192.1552.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1517bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11192:5042..6558+ (Ectocarpus species8 EcLAC_412)
TACTACCGGAGCGAGAATGCTGCGGTCGCCAATGGTGTGCTAGCGATCAC
CGCCAAGAAGGAAGATTATTCTTCAAGGCAAGACAGACGCCGATCGCTTG
AACCGGAACGCCTTCGCGCGATTTGTATTCGTTTATTTATGAGGAAATAG
AGCAGGGAGGGGGGACGCAGACCCAACTTCCCTAACCCTACCCCTATCCC
AACTTCCCCGATCGTATACGTATTCCAACATGTTTACGTAAGACCTTGCG
AAGGGTACTGCTTGAACCAGTCGCAAGCTCAATCCTAACGCTGTCCCTTG
AAATCGTACGAGTTTAGAAGCGCTTGTGTTGACCGTTGTGTTTGTTTATT
TCACGTGATGTTTGTTTTGACCTCGAGCAAGAACACTCATTCACTAGAAC
TTGGTTTATTTATTTCACAGTAAAGAAGATTTACGAGTACATGAAGATAA
TTAAGACTTTGGAGAAGAAACATTTTTGTTTTTTTGTGCTTCACCCGGCG
CAGGTTTTACACGAGCAGCAAGGTGATGACAAAGAACAAGTTCTCCTTCC
GGTACGGCAGGGCGGAGGCTAGGTTAAGGCTCCCTCCTGGTGGACAGGTA
CATGCATATGACTACGGAGACACAGACGTTTTTATTTCTGCGAAATAACC
TTGTTGTCGCTGTGTTTTTTGTCTTTATTGTTGCCGTTGTCGTTGTTGTC
GTTGTTGTTGTTGTTGTTCTTCTTCTTCTTCTTGGTAGTGGTGTTGTTGT
TGTTGTTGGTGTTGGTGTTGGTGTTGTTGTTTGTGTTGCTGTCGTCGTTG
TTGTTTGTTGTGTGTTGTTTTCGTTACCTTTGTCGTTGCCGTTGTTGCGG
GTCACGGTTGCTGTTGTCGTTGGTGATGTCAGGTTTGTTGTTCTTGTTGT
TGGTGATGTCAGTGCTTTGTTGTTGTTTTTGTACGCATGGTAGTAGTTGT
TGTTGTTGCTGTCGTCGTCGTTGTGCTGTTGTTAATGTTGATGTTGTTGT
CGTCGTGCTCCTCGATTGTTTTCCCGTTCGCGTGACGGTGGCCCTTGCTT
CTCTGCTGTCCTTCCTTTTAGCGTTGGGATGGGTGTCACCTTCCAACGCC
AACGCTGATTGCCTCTCCGGGCAAAACACCACACCAACAAGTACGATGCT
TGCTCTCGCATCGAATACCCCGCTGTGCCTTACGACCGCTTGGTTTGGTA
ACCGCTGCGTTTGGTAACCGCTGGGTTTGATAGCCACTGTGTAGTGACAA
CCGCCGTGTGTGATGGCCGCTGTGTGGTAATGGCCGCTGTACGTGATACC
CGCCGCGCCACATCAGCTATGTGCGATAGATATGTGTAGCTGCTTTGCTG
ATGCACACGTCTCGATCTTCCTGCCCCATGATTTTGCGACACAGGGGCTG
TGGCCGGCATTCTGGATGATGCCTCAGGACAACGCCTACGGCAAGTGGGC
GGCTTCGGGGGAGATCGACATCTTCGAGAGCAGAAACAACTTCACGGAGG
CTGTCAACAACCTGGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11192:5042..6558+

>mRNA_Ecto-sp8_S_contig11192.1552.1 ID=mRNA_Ecto-sp8_S_contig11192.1552.1|Name=mRNA_Ecto-sp8_S_contig11192.1552.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11192:5042..6558+ (Ectocarpus species8 EcLAC_412)
ATGACAAAGAACAAGTTCTCCTTCCGGTACGGCAGGGCGGAGGCTAGGTT
AAGGCTCCCTCCTGGTGGACAGGGGCTGTGGCCGGCATTCTGGATGATGC
CTCAGGACAACGCCTACGGCAAGTGGGCGGCTTCGGGGGAGATCGACATC
TTCGAGAGCAGAAACAACTTCACGGAGGCTGTCAACAACCTGGCC
back to top