mRNA_Ecto-sp8_S_contig11175.1542.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig11175.1542.1
Unique NamemRNA_Ecto-sp8_S_contig11175.1542.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig11175.1542.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 9.540e-42
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 QEGTRSSGGTGDVPQEQAEERSSSIRERHAAEYKPRRISVGTLLGKTHHPQTRPRDRMDSQSVGTEGSYSGEASSMPGGNIG 246
            QEGTRSSGGTGDVPQEQAEERSSSIRE+H+AEYKPRRISVGTLLGKTHHPQTRPRDRMDSQSVGTEGSYSGEASSMPGGNIG
Sbjct: 3370 QEGTRSSGGTGDVPQEQAEERSSSIREKHSAEYKPRRISVGTLLGKTHHPQTRPRDRMDSQSVGTEGSYSGEASSMPGGNIG 3451
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BLAST of mRNA_Ecto-sp8_S_contig11175.1542.1 vs. uniprot
Match: A0A6H5KJE7_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE7_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 6.130e-41
Identity = 83/105 (79.05%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:   13 RSSGGTGDVPQEQAEERSSSIRERHAAEYKPRRISVGTLLGKTHHPQTRPRDRMDSQSVGTEGSYSGEASSMPGGNIGXXXXXXXXXXXXXAATTGVGAAYGYAG 327
            R + GTGD+PQEQ EERSSSIRERH+AE+KPRRISVGTLLGKTHHPQTRPRDR+DSQSVGTEGSYSGEASSMPGGNIG       X     AATTG  AAYGYAG
Sbjct: 3002 RRANGTGDIPQEQTEERSSSIRERHSAEHKPRRISVGTLLGKTHHPQTRPRDRIDSQSVGTEGSYSGEASSMPGGNIGGNGTGGSXGHPGAAATTGXXAAYGYAG 3106
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig11175.1542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYV2_ECTSI9.540e-4297.56PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KJE7_9PHAE6.130e-4179.05DENN domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig11175contigEcto-sp8_S_contig11175:1165..2330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size340
Hectar predicted targeting categoryother localisation
Exons3
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143199.0918067-CDS-Ecto-sp8_S_contig11175:1164..13701681143199.0918067-CDS-Ecto-sp8_S_contig11175:1164..1370Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11175 1165..1370 -
1681143199.1040998-CDS-Ecto-sp8_S_contig11175:1699..18071681143199.1040998-CDS-Ecto-sp8_S_contig11175:1699..1807Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11175 1700..1807 -
1681143199.1121173-CDS-Ecto-sp8_S_contig11175:2305..23301681143199.1121173-CDS-Ecto-sp8_S_contig11175:2305..2330Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig11175 2306..2330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig11175.1542.1prot_Ecto-sp8_S_contig11175.1542.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig11175 1165..2330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig11175.1542.1

>prot_Ecto-sp8_S_contig11175.1542.1 ID=prot_Ecto-sp8_S_contig11175.1542.1|Name=mRNA_Ecto-sp8_S_contig11175.1542.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=113bp
QEGTRSSGGTGDVPQEQAEERSSSIRERHAAEYKPRRISVGTLLGKTHHP
QTRPRDRMDSQSVGTEGSYSGEASSMPGGNIGGNSTGGSGGHPGAAATTG
VGAAYGYAGGGGG
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mRNA from alignment at Ecto-sp8_S_contig11175:1165..2330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig11175.1542.1 ID=mRNA_Ecto-sp8_S_contig11175.1542.1|Name=mRNA_Ecto-sp8_S_contig11175.1542.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1166bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11175:1165..2330- (Ectocarpus species8 EcLAC_412)
CAAGAGGGAACTCGCTCGTCGGGCGGTGAGACAAAGGCTAAGGCTACACG
TTTAATTTTAAGCTGTGTACGTTGGCAGGTTTGTCGCAACGGCGTGATGA
ACGCGGAGTTCCAAGGGTTGCGCTGCCGTTTATGAAGTGTGGGAAGGGAG
GGCTAAGGACTCTTTTCTGTCTTTGTTTGATGCCGCGCACGCGGCGTGCT
TTGTTCCGTGCGATGACTTGGTGCGCCTGTACTGGTGTGAGGCTTGCGTA
TGTATAGAACGGTCACGCTTTATGAGTCGCTTTTGTGAAACGCCCCCCCC
TTCCCCGAGCACGGAAGGCACAATGGCGAGGGTGTCATCTTCTTTGCACA
ACGCCGGTGCTAGTGTCCTCAAGGGCAAGAGGCAAGGGGTCGACAAGAGC
GTCGCGCAGGACTTGAAAACGTCGCCGCCGTTGAGATCGATCGGTCCCAG
CCAACCGCACACGTGATGAATCATGGGACTTTTGTGTGTGTTTTTTCCGT
TTCGTGCCGCCACACACATGTAGGCACCGGCGACGTTCCTCAGGAGCAGG
CGGAGGAGAGAAGCAGCAGCATCCGGGAGAGACACGCTGCTGAGTACAAA
CCAAGGAGAATATCTGTGGGGACCCTGCTAGGTGAGACAATGGCGTCCTG
CTTGGCTAGTCTAGTGTAGCGGCGTTTTCGACACCGCATACTGGTCGAGG
AGAGTGAGTGATGTGCTGGCTGCTCTTCTGTCGAGGGATGCTCTGTCGTT
GCCCTCGATGAACCCGCTCGAGTTAGCCCCCCAATCCGCAGCTTACGGAT
GGTGCTTATCGAGCCCGCGCGCGCCAAAACCGCATCCTCTGTCACCGGTG
CATGTACCCTGAAGCCGTAAGACCTCCCTCTCTTAGTTCCCGTTTCCTTG
CCGCCTCTCTTTTCCCCCCCTAATCTCTTACCATCCCTCACGCCCGAACG
GCAACTCCAGGCAAGACCCACCACCCTCAGACGCGTCCTCGAGACCGGAT
GGACAGCCAGTCCGTGGGCACCGAAGGCTCTTACTCCGGAGAGGCCTCCT
CCATGCCCGGCGGCAACATCGGCGGCAACAGCACCGGCGGGAGCGGGGGT
CACCCCGGGGCGGCGGCCACCACGGGAGTCGGGGCCGCCTACGGCTACGC
CGGAGGCGGAGGTGGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig11175:1165..2330-

>mRNA_Ecto-sp8_S_contig11175.1542.1 ID=mRNA_Ecto-sp8_S_contig11175.1542.1|Name=mRNA_Ecto-sp8_S_contig11175.1542.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp8_S_contig11175:1165..2330- (Ectocarpus species8 EcLAC_412)
CAAGAGGGAACTCGCTCGTCGGGCGGCACCGGCGACGTTCCTCAGGAGCA
GGCGGAGGAGAGAAGCAGCAGCATCCGGGAGAGACACGCTGCTGAGTACA
AACCAAGGAGAATATCTGTGGGGACCCTGCTAGGCAAGACCCACCACCCT
CAGACGCGTCCTCGAGACCGGATGGACAGCCAGTCCGTGGGCACCGAAGG
CTCTTACTCCGGAGAGGCCTCCTCCATGCCCGGCGGCAACATCGGCGGCA
ACAGCACCGGCGGGAGCGGGGGTCACCCCGGGGCGGCGGCCACCACGGGA
GTCGGGGCCGCCTACGGCTACGCCGGAGGCGGAGGTGGA
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